Rh2CG367700

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009481
Physical Location & Seq
Reverse (-)
50039205 .. 50041748
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG367700.1

Sequence Viewer

Length: 1095 bp
ATGAAAACCCTTCGATTCTACTCAACTTCTTCTTCTTCTTCTTCTTCTTCCACTTGTCTCATTCTTCTCCTTCATATATTCTCTCTCTTTCTGAGCTCAAATACTACTCCTACTACTGATAGAGAGAAATTTGACTCTCTCTTACGGCTCCCCCAATCCGGGTCTACCAGAACCCGACATAGATCCAAGAGGGTTCTCTTTGTTGGCGATTTTGGTGCCAAAGGAGATGGCATCACTGATGATTCTCAGGCTTTCAAAAATGCTTGGGAGGTTGCTTGTTCTATTCCCACACGGACAAGAATTCTAATTCCCTCCGGAAGGACTTACCTTATCCATCCTGTTGATATTGCTGGACCGTGTCGATCAAAGGTGACTTTAATGATCTCTGGTACCATCATTGCTCCCATCAATCCTGATGCTTGGATTGGTTTGAATCGACGCAAGTGGCTTTATTTCCATGGGGTGAACCATCTCACCATTGAAGGGGGAGGAACAGTTGATGGGATGGGACAGGAATGGTGGGCTCGTTCTTGTAAGACCAACTCAACAAATCCATGTCGACATGCTCCAACGGCCATTACATTCCATAGGTGCAAGAATTTGAAGGTCAAAAATATTATGATTGTCAATAGTCAAAAAATGCACATGGCATTCACCAACTGTTTGCGGGTATTAGCATCCCATCTCCAAGTTATTGCACCTGCCACTAGTCCCAATACTGATGGAATCCACATTAGTGTGTCAAAGGGTGTTGAGGTCAAGGATAGCATAATAAGAACAGGAGATGACTGCATTTCTATAGTTAGCAATTCTTCACGCATCCGGATCGTGAATATTGTCTGTGGCCCTGGTCATGGCATAAGCATTGGAAGCTTGGGAAAATCAAACTCTTGGTCACATGTGCGTGATGTAGTGGTTGATGCAGCATTCCTCTCTAACACTGAGAATGGAGTGAGGATCAAAACATGGCAGGGAGGTAGTGGTTTTGCCTCTAACATTGCATTTCGGAATGTCGTCATGAACAACGTATCAAATCCAATTATAATTGATCAATATTATTGTGACTCCCAGTTGCCATGTTTAAATCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

364

Amino Acids

39.91

Weight (kDa)

9.61

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 93 - 357 1.3e-82 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AarI CACCTGC 1 cut(s) 709
Acc36I ACCTGC 1 cut(s) 709
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 2 cut(s) 215, 389
AccI GTMKAC 2 cut(s) 164, 559
AccIII TCCGGA 2 cut(s) 314, 822
AciI CCGC 1 cut(s) 667
AclWI GGATC 3 cut(s) 177, 833, 965
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 128, 300, 598
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 5 cut(s) 158, 159, 318, 483, 854
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 4 cut(s) 256, 433, 482, 604
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 1 cut(s) 847
AleI CACNNNNGTG 1 cut(s) 735
AluBI AGCT 2 cut(s) 96, 873
AluI AGCT 2 cut(s) 96, 873
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 3 cut(s) 177, 833, 965
Aor13HI TCCGGA 2 cut(s) 314, 822
AoxI GGCC 2 cut(s) 573, 844
ApeKI GCWGC 1 cut(s) 923
ApoI RAATTY 3 cut(s) 128, 300, 598
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp718I GGTACC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 353, 845
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 4 cut(s) 382, 466, 475, 646
AvaII GGWCC 1 cut(s) 353
BanI GGYRCC 2 cut(s) 215, 389
BanII GRGCYC 2 cut(s) 98, 526
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 935
BccI CCATC 9 cut(s) 221, 342, 401, 413, 477, 494, 499, 690, 716
BceAI ACGGC 2 cut(s) 161, 588
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 808, 842
BciT130I CCWGG 1 cut(s) 849
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 798
BfuAI ACCTGC 1 cut(s) 709
BisI GCNGC 1 cut(s) 924
BlsI GCNGC 1 cut(s) 925
Bme1390I CCNGG 2 cut(s) 160, 849
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 353, 845
BmiI GGNNCC 3 cut(s) 149, 217, 391
BmrFI CCNGG 2 cut(s) 160, 849
BmrI ACTGGG 1 cut(s) 1063
BmsI GCATC 5 cut(s) 240, 406, 686, 828, 910
BmuI ACTGGG 1 cut(s) 1063
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 457, 847
BsaWI WCCGGW 2 cut(s) 314, 822
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 159, 318, 483, 854
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 2 cut(s) 396, 996
BseAI TCCGGA 2 cut(s) 314, 822
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 2 cut(s) 457, 847
BseGI GGATG 4 cut(s) 334, 510, 677, 819
BseLI CCNNNNNNNGG 5 cut(s) 158, 159, 318, 483, 854
BseMI GCAATG 2 cut(s) 396, 996
BseMII CTCAG 3 cut(s) 83, 260, 933
BseNI ACTGG 1 cut(s) 1069
BseXI GCAGC 1 cut(s) 935
BshFI GGCC 2 cut(s) 575, 846
BshNI GGYRCC 2 cut(s) 215, 389
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 3 cut(s) 159, 315, 823
BslFI GGGAC 2 cut(s) 522, 696
BslI CCNNNNNNNGG 5 cut(s) 158, 159, 318, 483, 854
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 522, 696
BsmI GAATGC 2 cut(s) 650, 926
BsnI GGCC 2 cut(s) 575, 846
Bsp1286I GDGCHC 2 cut(s) 98, 526
Bsp13I TCCGGA 2 cut(s) 314, 822
Bsp143I GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 1 cut(s) 667
BspANI GGCC 2 cut(s) 575, 846
BspCNI CTCAG 3 cut(s) 84, 259, 934
BspEI TCCGGA 2 cut(s) 314, 822
BspHI TCATGA 1 cut(s) 1017
BspLI GGNNCC 3 cut(s) 149, 217, 391
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 3 cut(s) 177, 833, 965
BspT107I GGYRCC 2 cut(s) 215, 389
BsrDI GCAATG 2 cut(s) 396, 996
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 2 cut(s) 457, 847
BssMI GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 3 cut(s) 357, 496, 662
BstDEI CTNAG 3 cut(s) 92, 246, 942
BstDSI CCRYGG 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 4 cut(s) 334, 510, 677, 819
BstKTI GATC 6 cut(s) 185, 365, 384, 828, 960, 1051
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 572, 870
BstNI CCWGG 1 cut(s) 849
BstNSI RCATGY 2 cut(s) 566, 902
BstSCI CCNGG 2 cut(s) 158, 847
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 575, 846
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 4 cut(s) 334, 510, 677, 819
BtsIMutI CAGTG 2 cut(s) 234, 939
BveI ACCTGC 1 cut(s) 709
CciI TCATGA 1 cut(s) 1017
Cfr13I GGNCC 2 cut(s) 353, 845
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 390
CviAII CATG 9 cut(s) 458, 555, 563, 646, 854, 899, 966, 1018, 1077
CviJI RGCY 8 cut(s) 96, 148, 251, 448, 524, 575, 846, 873
CviKI_1 RGCY 8 cut(s) 96, 148, 251, 448, 524, 575, 846, 873
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 3 cut(s) 92, 246, 942
DpnI GATC 6 cut(s) 184, 364, 383, 827, 959, 1050
DpnII GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
DraI TTTAAA 1 cut(s) 1083
EaeI YGGCCR 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 2 cut(s) 98, 526
Eco47I GGWCC 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 2 cut(s) 98, 526
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 9 cut(s) 461, 558, 566, 649, 857, 902, 969, 1021, 1080
FaqI GGGAC 2 cut(s) 522, 696
FatI CATG 9 cut(s) 457, 554, 562, 645, 853, 898, 965, 1017, 1076
FauI CCCGC 1 cut(s) 660
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 2 cut(s) 164, 559
Fnu4HI GCNGC 1 cut(s) 924
FokI GGATG 4 cut(s) 321, 517, 664, 806
FriOI GRGCYC 2 cut(s) 98, 526
Fsp4HI GCNGC 1 cut(s) 924
FspBI CTAG 1 cut(s) 708
GluI GCNGC 1 cut(s) 924
HaeIII GGCC 2 cut(s) 575, 846
HapII CCGG 3 cut(s) 159, 315, 823
HgaI GACGC 1 cut(s) 447
Hin1II CATG 9 cut(s) 461, 558, 566, 649, 857, 902, 969, 1021, 1080
HincII GTYRAC 1 cut(s) 560
HindII GTYRAC 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 871
HinfI GANTC 6 cut(s) 15, 134, 242, 433, 726, 1064
HpaII CCGG 3 cut(s) 159, 315, 823
HphI GGTGA 4 cut(s) 382, 466, 475, 646
Hpy166II GTNNAC 3 cut(s) 165, 466, 560
Hpy188I TCNGA 2 cut(s) 93, 1008
Hpy188III TCNNGA 5 cut(s) 315, 413, 823, 829, 1018
Hpy8I GTNNAC 3 cut(s) 165, 466, 560
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 5 cut(s) 20, 80, 312, 476, 598
HpyCH4III ACNGT 3 cut(s) 357, 496, 662
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 6 cut(s) 594, 643, 698, 792, 923, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 870
HpyF3I CTNAG 3 cut(s) 92, 246, 942
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 9 cut(s) 461, 558, 566, 649, 857, 902, 969, 1021, 1080
Kpn2I TCCGGA 2 cut(s) 314, 822
KpnI GGTACC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
LmnI GCTCC 3 cut(s) 153, 406, 571
Lsp1109I GCAGC 1 cut(s) 935
LweI GCATC 5 cut(s) 240, 406, 686, 828, 910
MaeI CTAG 1 cut(s) 708
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 3 cut(s) 370, 894, 1061
MalI GATC 6 cut(s) 184, 364, 383, 827, 959, 1050
MboI GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
MboII GAAGA 9 cut(s) 21, 24, 27, 30, 33, 36, 39, 56, 804
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 98, 526
MluCI AATT 7 cut(s) 128, 300, 306, 598, 808, 1038, 1044
MlyI GAGTC 2 cut(s) 128, 1058
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 9 cut(s) 183, 262, 322, 482, 748, 941, 948, 968, 1000
MroI TCCGGA 2 cut(s) 314, 822
MseI TTAA 2 cut(s) 377, 1082
MslI CAYNNNNRTG 3 cut(s) 735, 737, 903
MspI CCGG 3 cut(s) 159, 315, 823
MspR9I CCNGG 2 cut(s) 160, 849
Mva1269I GAATGC 2 cut(s) 650, 926
MvaI CCWGG 1 cut(s) 849
MwoI GCNNNNNNNGC 2 cut(s) 572, 870
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 1 cut(s) 457
NdeII GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
NlaIII CATG 9 cut(s) 461, 558, 566, 649, 857, 902, 969, 1021, 1080
NlaIV GGNNCC 3 cut(s) 149, 217, 391
NmuCI GTSAC 3 cut(s) 370, 894, 1061
NspI RCATGY 2 cut(s) 566, 902
OliI CACNNNNGTG 1 cut(s) 735
PagI TCATGA 1 cut(s) 1017
PaqCI CACCTGC 1 cut(s) 709
PciI ACATGT 1 cut(s) 898
PctI GAATGC 2 cut(s) 650, 926
PfeI GAWTC 4 cut(s) 15, 242, 433, 726
PflFI GACNNNGTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 925
PleI GAGTC 2 cut(s) 128, 1058
PpsI GAGTC 2 cut(s) 128, 1058
PscI ACATGT 1 cut(s) 898
PsiI TTATAA 1 cut(s) 1043
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 847
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 3 cut(s) 149, 217, 391
PspPI GGNCC 2 cut(s) 353, 845
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 357
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 3 cut(s) 735, 737, 903
SacI GAGCTC 1 cut(s) 98
SalI GTCGAC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 377, 1082
SatI GCNGC 1 cut(s) 924
Sau3AI GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
Sau96I GGNCC 2 cut(s) 353, 845
SchI GAGTC 2 cut(s) 128, 1058
ScrFI CCNGG 2 cut(s) 160, 849
SduI GDGCHC 2 cut(s) 98, 526
SfaNI GCATC 5 cut(s) 240, 406, 686, 828, 910
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 3 cut(s) 735, 737, 903
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 7 cut(s) 128, 300, 306, 598, 808, 1038, 1044
SsiI CCGC 1 cut(s) 667
SspI AATATT 3 cut(s) 616, 835, 1055
SspMI CTAG 1 cut(s) 708
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 158, 847
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 3 cut(s) 357, 496, 662
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 4 cut(s) 13, 361, 436, 559
TasI AATT 7 cut(s) 128, 300, 306, 598, 808, 1038, 1044
TfiI GAWTC 4 cut(s) 15, 242, 433, 726
Tru1I TTAA 2 cut(s) 377, 1082
Tru9I TTAA 2 cut(s) 377, 1082
TscAI CASTG 2 cut(s) 241, 946
TseFI GTSAC 3 cut(s) 370, 894, 1061
TseI GCWGC 1 cut(s) 923
Tsp45I GTSAC 3 cut(s) 370, 894, 1061
TspDTI ATGAA 3 cut(s) 17, 62, 1034
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 2 cut(s) 241, 946
Tth111I GACNNNGTC 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 3 cut(s) 128, 300, 598
XceI RCATGY 2 cut(s) 566, 902
XmiI GTMKAC 2 cut(s) 164, 559
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.