Rh2DG404500

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009481
Physical Location & Seq
Reverse (-)
58878579 .. 58883193
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG404500.1

Sequence Viewer

Length: 1092 bp
ATGAAAACCCTTCGATTCTACTCATCTTCTTCTTCTTCTTCTTCTTCCACTTGTCTCATTCTTGTCCTTCATATATTCTCTCTCTTTCTGAGCTCAAATACTACTCCTACTACTGATAGAGAGAAATTTGACTCTCTCTTACGGCTCCCCCAATCCGGGTCTACCAGAACCCAACTTAGATCCAAGAGGGTTCTCTTTGTTGGCGATTTTGGTGCCAAAGGAGATGGCATCACTGATGATTCTAAGGCTTTCAAAAATGCTTGGGAGGTTGCTTGTTCTATTCCCACACGGACAAGAATTCTAATTCCCTCCGGAAGGACTTACCTTATCCATCCTGTTGATATTGCTGGACCGTGTCGATCAAAGGTGACTTTAATGATCTCTGGTACCATCATTGCTCCCATCAATCCTGATGCTTGGATTGGTTTGAATCGACGCAAGTGGCTTTATTTCCATGGGGTGAACCATCTCACCATTGAAGGGGGAGGAACAGTCGATGGGATGGGACAGGAATGGTGGGCTCGTTCTTGTAAGACCAACTCAACAAATCCATGTCGACATGCTCCAACGGCCATTACATTCCATAGGTGCAAGAATTTGAAGGTCAAAAATATTATGATTGTCAATAGTCAAAAAATGCACATGGCATTCACCAACTGTATGCGGGTATTAGCATCCCATCTCCAAGTTATTGCACCTGCCACTAGTCCCAATACTGATGGAATCCACATTAGTGTGTCAAAGGGTGTTGAGGTCAAGGATAGCATAATAAGAACAGGAGATGACTGCATTTCTATAGTTAGCAATTCTTCACGCATCCGGATCGTGAATATTGTCTGCGGCCCTGGTCATGGCATAAGCATCGGAAGCTTGGGAAAATCAAACTCTTGGTCACATGTGCGTGATGTAGTGGTTGATGCAGCATTCCTCTCTAACACTGAGAATGGAGTGAGGATCAAAACATGGCAGGGAGGTAGTGGTTTTGCCTCTAACATTGCATTTCGGAATGTGGTCATGGACAACGTATCAAATCCAATTATAATTGATCAATATTATTGTGACTCCCAGTTGCCATGTTTAAATCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

363

Amino Acids

39.76

Weight (kDa)

9.52

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 92 - 356 1.3e-82 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AarI CACCTGC 1 cut(s) 706
Acc36I ACCTGC 1 cut(s) 706
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 212, 386
AccI GTMKAC 2 cut(s) 161, 556
AccIII TCCGGA 2 cut(s) 311, 819
AciI CCGC 2 cut(s) 664, 840
AclWI GGATC 3 cut(s) 174, 830, 962
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 125, 297, 595
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 5 cut(s) 155, 156, 315, 480, 851
AflIII ACRYGT 1 cut(s) 895
AgsI TTSAA 4 cut(s) 253, 430, 479, 601
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 1 cut(s) 844
AleI CACNNNNGTG 1 cut(s) 732
AluBI AGCT 2 cut(s) 93, 870
AluI AGCT 2 cut(s) 93, 870
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 3 cut(s) 174, 830, 962
Aor13HI TCCGGA 2 cut(s) 311, 819
AoxI GGCC 2 cut(s) 570, 841
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 3 cut(s) 125, 297, 595
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp718I GGTACC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 350, 842
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 379, 463, 472, 643
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 212, 386
BanII GRGCYC 2 cut(s) 95, 523
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 932
BccI CCATC 9 cut(s) 218, 339, 398, 410, 474, 491, 496, 687, 713
BceAI ACGGC 2 cut(s) 158, 585
BcgI CGANNNNNNTGC 6 cut(s) 194, 228, 805, 839, 844, 878
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 1045
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 795
BfuAI ACCTGC 1 cut(s) 706
BisI GCNGC 2 cut(s) 841, 921
BlsI GCNGC 2 cut(s) 842, 922
Bme1390I CCNGG 2 cut(s) 157, 846
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 350, 842
BmiI GGNNCC 3 cut(s) 146, 214, 388
BmrFI CCNGG 2 cut(s) 157, 846
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 6 cut(s) 237, 403, 683, 825, 870, 907
BmuI ACTGGG 1 cut(s) 1060
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 454, 844
BsaWI WCCGGW 2 cut(s) 311, 819
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 156, 315, 480, 851
Bse1I ACTGG 1 cut(s) 1066
Bse3DI GCAATG 2 cut(s) 393, 993
BseAI TCCGGA 2 cut(s) 311, 819
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 454, 844
BseGI GGATG 4 cut(s) 331, 507, 674, 816
BseLI CCNNNNNNNGG 5 cut(s) 155, 156, 315, 480, 851
BseMI GCAATG 2 cut(s) 393, 993
BseMII CTCAG 2 cut(s) 80, 930
BseNI ACTGG 1 cut(s) 1066
BseXI GCAGC 1 cut(s) 932
BshFI GGCC 2 cut(s) 572, 843
BshNI GGYRCC 2 cut(s) 212, 386
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 3 cut(s) 156, 312, 820
BslFI GGGAC 2 cut(s) 519, 693
BslI CCNNNNNNNGG 5 cut(s) 155, 156, 315, 480, 851
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 2 cut(s) 519, 693
BsmI GAATGC 2 cut(s) 647, 923
BsnI GGCC 2 cut(s) 572, 843
Bsp1286I GDGCHC 2 cut(s) 95, 523
Bsp13I TCCGGA 2 cut(s) 311, 819
Bsp143I GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 2 cut(s) 664, 840
BspANI GGCC 2 cut(s) 572, 843
BspCNI CTCAG 2 cut(s) 81, 931
BspEI TCCGGA 2 cut(s) 311, 819
BspLI GGNNCC 3 cut(s) 146, 214, 388
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 3 cut(s) 174, 830, 962
BspT107I GGYRCC 2 cut(s) 212, 386
BsrDI GCAATG 2 cut(s) 393, 993
BsrI ACTGG 1 cut(s) 1066
BssECI CCNNGG 2 cut(s) 454, 844
BssMI GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 354, 493, 659
BstDEI CTNAG 4 cut(s) 89, 176, 243, 939
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 4 cut(s) 331, 507, 674, 816
BstKTI GATC 6 cut(s) 182, 362, 381, 825, 957, 1048
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 569, 867
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 2 cut(s) 563, 899
BstSCI CCNGG 2 cut(s) 155, 844
BstSFI CTRYAG 1 cut(s) 795
BstV1I GCAGC 1 cut(s) 932
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 2 cut(s) 572, 843
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 4 cut(s) 331, 507, 674, 816
BtsIMutI CAGTG 2 cut(s) 231, 936
BveI ACCTGC 1 cut(s) 706
Cfr13I GGNCC 2 cut(s) 350, 842
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 387
CviAII CATG 9 cut(s) 455, 552, 560, 643, 851, 896, 963, 1015, 1074
CviJI RGCY 8 cut(s) 93, 145, 248, 445, 521, 572, 843, 870
CviKI_1 RGCY 8 cut(s) 93, 145, 248, 445, 521, 572, 843, 870
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 4 cut(s) 89, 176, 243, 939
DpnI GATC 6 cut(s) 181, 361, 380, 824, 956, 1047
DpnII GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
DraI TTTAAA 1 cut(s) 1080
EaeI YGGCCR 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 95, 523
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 2 cut(s) 95, 523
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 9 cut(s) 458, 555, 563, 646, 854, 899, 966, 1018, 1077
FaqI GGGAC 2 cut(s) 519, 693
FatI CATG 9 cut(s) 454, 551, 559, 642, 850, 895, 962, 1014, 1073
FauI CCCGC 1 cut(s) 657
FbaI TGATCA 1 cut(s) 1045
FblI GTMKAC 2 cut(s) 161, 556
Fnu4HI GCNGC 2 cut(s) 841, 921
FokI GGATG 4 cut(s) 318, 514, 661, 803
FriOI GRGCYC 2 cut(s) 95, 523
Fsp4HI GCNGC 2 cut(s) 841, 921
FspBI CTAG 1 cut(s) 705
GluI GCNGC 2 cut(s) 841, 921
HaeIII GGCC 2 cut(s) 572, 843
HapII CCGG 3 cut(s) 156, 312, 820
HgaI GACGC 1 cut(s) 444
Hin1II CATG 9 cut(s) 458, 555, 563, 646, 854, 899, 966, 1018, 1077
HincII GTYRAC 1 cut(s) 557
HindII GTYRAC 1 cut(s) 557
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 6 cut(s) 15, 131, 239, 430, 723, 1061
HpaII CCGG 3 cut(s) 156, 312, 820
HphI GGTGA 4 cut(s) 379, 463, 472, 643
Hpy166II GTNNAC 3 cut(s) 162, 463, 557
Hpy188I TCNGA 3 cut(s) 90, 866, 1005
Hpy188III TCNNGA 4 cut(s) 312, 410, 820, 826
Hpy8I GTNNAC 3 cut(s) 162, 463, 557
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 5 cut(s) 20, 77, 309, 473, 595
HpyCH4III ACNGT 3 cut(s) 354, 493, 659
HpyCH4IV ACGT 1 cut(s) 1023
HpyCH4V TGCA 6 cut(s) 591, 640, 695, 789, 920, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 867
HpyF3I CTNAG 4 cut(s) 89, 176, 243, 939
HpySE526I ACGT 1 cut(s) 1023
Hsp92II CATG 9 cut(s) 458, 555, 563, 646, 854, 899, 966, 1018, 1077
Kpn2I TCCGGA 2 cut(s) 311, 819
KpnI GGTACC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 1045
Kzo9I GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
LmnI GCTCC 3 cut(s) 150, 403, 568
Lsp1109I GCAGC 1 cut(s) 932
LweI GCATC 6 cut(s) 237, 403, 683, 825, 870, 907
MaeI CTAG 1 cut(s) 705
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 3 cut(s) 367, 891, 1058
MalI GATC 6 cut(s) 181, 361, 380, 824, 956, 1047
MboI GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
MboII GAAGA 8 cut(s) 18, 21, 24, 27, 30, 33, 36, 801
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 95, 523
MluCI AATT 7 cut(s) 125, 297, 303, 595, 805, 1035, 1041
MlyI GAGTC 2 cut(s) 125, 1055
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 9 cut(s) 180, 259, 319, 479, 745, 938, 945, 965, 997
MroI TCCGGA 2 cut(s) 311, 819
MseI TTAA 2 cut(s) 374, 1079
MslI CAYNNNNRTG 3 cut(s) 732, 734, 900
MspI CCGG 3 cut(s) 156, 312, 820
MspR9I CCNGG 2 cut(s) 157, 846
Mva1269I GAATGC 2 cut(s) 647, 923
MvaI CCWGG 1 cut(s) 846
MwoI GCNNNNNNNGC 2 cut(s) 569, 867
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 454
NdeII GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
NlaIII CATG 9 cut(s) 458, 555, 563, 646, 854, 899, 966, 1018, 1077
NlaIV GGNNCC 3 cut(s) 146, 214, 388
NmuCI GTSAC 3 cut(s) 367, 891, 1058
NspI RCATGY 2 cut(s) 563, 899
OliI CACNNNNGTG 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 706
PciI ACATGT 1 cut(s) 895
PctI GAATGC 2 cut(s) 647, 923
PfeI GAWTC 4 cut(s) 15, 239, 430, 723
PflFI GACNNNGTC 1 cut(s) 354
PkrI GCNGC 2 cut(s) 842, 922
PleI GAGTC 2 cut(s) 125, 1055
PpsI GAGTC 2 cut(s) 125, 1055
PscI ACATGT 1 cut(s) 895
PsiI TTATAA 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 3 cut(s) 146, 214, 388
PspPI GGNCC 2 cut(s) 350, 842
PsuI RGATCY 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 354
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 3 cut(s) 732, 734, 900
SacI GAGCTC 1 cut(s) 95
SalI GTCGAC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 374, 1079
SatI GCNGC 2 cut(s) 841, 921
Sau3AI GATC 6 cut(s) 179, 359, 378, 822, 954, 1045
Sau96I GGNCC 2 cut(s) 350, 842
SchI GAGTC 2 cut(s) 125, 1055
ScrFI CCNGG 2 cut(s) 157, 846
SduI GDGCHC 2 cut(s) 95, 523
SfaNI GCATC 6 cut(s) 237, 403, 683, 825, 870, 907
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 3 cut(s) 732, 734, 900
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 7 cut(s) 125, 297, 303, 595, 805, 1035, 1041
SsiI CCGC 2 cut(s) 664, 840
SspI AATATT 3 cut(s) 613, 832, 1052
SspMI CTAG 1 cut(s) 705
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 155, 844
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 3 cut(s) 354, 493, 659
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 5 cut(s) 13, 358, 433, 495, 556
TasI AATT 7 cut(s) 125, 297, 303, 595, 805, 1035, 1041
TauI GCSGC 1 cut(s) 843
TfiI GAWTC 4 cut(s) 15, 239, 430, 723
Tru1I TTAA 2 cut(s) 374, 1079
Tru9I TTAA 2 cut(s) 374, 1079
TscAI CASTG 2 cut(s) 238, 943
TseFI GTSAC 3 cut(s) 367, 891, 1058
TseI GCWGC 1 cut(s) 920
Tsp45I GTSAC 3 cut(s) 367, 891, 1058
TspDTI ATGAA 2 cut(s) 17, 59
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 2 cut(s) 238, 943
Tth111I GACNNNGTC 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 313
XapI RAATTY 3 cut(s) 125, 297, 595
XceI RCATGY 2 cut(s) 563, 899
XmiI GTMKAC 2 cut(s) 161, 556
XspI CTAG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.