Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Reverse (-)

23371759 .. 23374256

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTAATTCTCGATCATCCTGCCAATTCTTCACTCCATTTTTGATAGAGGGTAAAGAATTCGGAGCTGTATCTGACATTGAGCACCACCAAGCTTTCAAGAAACCCAGAATCTCTGAGGTTGGGTCAGACTCAACGATGGCCGGGAGGAGATATAGGTGGTTGCATTACAAGACCCGTTTGTGCAGTAACTTCAAACGAGGTCGTTGCCATTACGGTGAGGCGTGTCTCTATGCTCACGGCGTTGAAGAACTCCGCAACACTTTGGGTGGTTCGCAAAATGAGAAGGGCGTGTTGGGTAGGACTGAGTATGGTAATCATGGAATTTGTGATAGACTTAAACTGTGTAAGATGTTCTCTAATCAAGGGAGATGTGAATATGGAGAGAAATGCCGCTTTCGTCATGTGATTCTGAAAAGAATCAAAGATGATGAGTCAGTGATAACCATTTCAGCTGGTGGGTCTGAAGGGTCTATCAATGGTGGTTATGGTCAATTTGGGGGCAAGAGGTCTCTGGGTTTGGATGTTGATACTAATGGAGGGAGTGGAGGGAGGCATTTTAGGCAACATGGCTCTGTTGCAGTAGGGAGAGGTATGCTGAGTAACACCTGCATTGCGAGTGAAAGCTTTGCTGATGAACATGCCGTGCTAAGGAAGCTTTGTGGCTACACTACCGCGGAGACCAAATATTCGAAGACTTATACTATTTCTAGAGAAATGCAAGTTAGGGACGGCAAGTTCGACTGGAATGAACTTGAGAAAATGAGTCGTATCTATGCTGATTGGATTGAAGAAATTCCTCTTGTACATAGGAAGGTGCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

276

Amino Acids

30.99

Weight (kDa)

9.07

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	57 - 81	5.7e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	114 - 135	7.7e-06	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	617
AccII	CGCG	1 cut(s)	677
AciI	CCGC	4 cut(s)	256, 394, 675, 677
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	59, 324, 795
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	4 cut(s)	100, 196, 248, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
AluBI	AGCT	5 cut(s)	68, 95, 455, 627, 658
AluI	AGCT	5 cut(s)	68, 95, 455, 627, 658
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	3 cut(s)	233, 516, 674
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	59, 324, 795
ArsI	GACNNNNNNTTYG	4 cut(s)	673, 705, 722, 754
Asp700I	GAANNNNTTC	1 cut(s)	795
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	3 cut(s)	256, 629, 748
BcgI	CGANNNNNNTGC	3 cut(s)	37, 189, 223
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	233, 516, 674
BfaI	CTAG	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	701
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	1 cut(s)	145
BsaI	GGTCTC	2 cut(s)	516, 674
BsaJI	CCNNGG	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	2 cut(s)	17, 529
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	3 cut(s)	108, 297, 590
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	677
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	3 cut(s)	233, 516, 674
BsmFI	GGGAC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	2 cut(s)	516, 674
Bsp119I	TTCGAA	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	4 cut(s)	256, 394, 675, 677
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	109, 298, 591
BspFNI	CGCG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	692
BspTNI	GGTCTC	2 cut(s)	516, 674
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	218, 345
BstAUI	TGTACA	1 cut(s)	805
BstBI	TTCGAA	1 cut(s)	692
BstDEI	CTNAG	4 cut(s)	117, 306, 599, 650
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	2 cut(s)	17, 529
BstFNI	CGCG	1 cut(s)	677
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	3 cut(s)	233, 516, 674
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	562, 655
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	143
BstUI	CGCG	1 cut(s)	677
BstV2I	GAAGAC	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	2 cut(s)	17, 529
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	2 cut(s)	444, 827
BveI	ACCTGC	1 cut(s)	617
Cfr42I	CCGCGG	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	4 cut(s)	320, 404, 569, 641
CviJI	RGCY	8 cut(s)	68, 95, 143, 455, 573, 627, 658, 666
CviKI_1	RGCY	8 cut(s)	68, 95, 143, 455, 573, 627, 658, 666
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	4 cut(s)	117, 306, 599, 650
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	141
Eco31I	GGTCTC	2 cut(s)	516, 674
Eco57I	CTGAAG	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	59
FaeI	CATG	4 cut(s)	323, 407, 572, 644
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	4 cut(s)	319, 403, 568, 640
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	2 cut(s)	4, 536
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	4 cut(s)	323, 407, 572, 644
HindIII	AAGCTT	3 cut(s)	93, 625, 656
HinfI	GANTC	6 cut(s)	111, 131, 409, 420, 434, 766
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	6 cut(s)	65, 76, 118, 130, 414, 466
Hpy188III	TCNNGA	3 cut(s)	12, 100, 711
HpyAV	CCTTC	3 cut(s)	280, 461, 808
HpyCH4III	ACNGT	2 cut(s)	218, 345
HpyCH4V	TGCA	6 cut(s)	166, 186, 581, 612, 721, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	562, 655
HpyF3I	CTNAG	4 cut(s)	117, 306, 599, 650
Hsp92II	CATG	4 cut(s)	323, 407, 572, 644
KspI	CCGCGG	1 cut(s)	678
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	7 cut(s)	34, 121, 157, 441, 500, 622, 730
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	188, 602
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	4 cut(s)	22, 260, 706, 803
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	6 cut(s)	7, 26, 59, 324, 494, 795
MlyI	GAGTC	3 cut(s)	125, 443, 775
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	455, 677
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	2 cut(s)	562, 655
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	4 cut(s)	323, 407, 572, 644
NspI	RCATGY	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	111, 409, 420
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	3 cut(s)	125, 442, 774
PpsI	GAGTC	3 cut(s)	125, 442, 774
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	3 cut(s)	125, 443, 775
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	87
Sfr303I	CCGCGG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	692
SgrBI	CCGCGG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	6 cut(s)	7, 26, 59, 324, 494, 795
SsiI	CCGC	4 cut(s)	256, 394, 675, 677
SspI	AATATT	1 cut(s)	689
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	218, 345
TaqI	TCGA	3 cut(s)	13, 692, 741
TasI	AATT	6 cut(s)	7, 26, 59, 324, 494, 795
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	111, 409, 420
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	444, 827
TspDTI	ATGAA	2 cut(s)	651, 765
TspRI	CASTG	2 cut(s)	444, 827
XapI	RAATTY	3 cut(s)	59, 324, 795
XbaI	TCTAGA	1 cut(s)	710
XceI	RCATGY	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.