Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

19341021 .. 19343256

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTACTGCTGGTGGTTCTGCTCAATTTGACAGCAAGAAGTCTCTGGAACTAAGTAAGCTTGGTGGCTATACTACACCAGAATGTGGAAGTGTGCAGGCTAACAGTTTAACGACTTATACGAGGGGCAACAATGCATCAAATCGTAGGATGGGGATTGCGACTGCTTATAAACAAGGTCAGAGTACGCAGTGCAACGTAGAGTGGAATGAACTTGAGAAATTGAGTCGCATCTATGCTGATTGGATTGAAGATATGCCTCTTCTACATGGCTCATCAAACAAAGTGGAGTGCAACTCGAGTTTAGACGGAAAGAACCACTCAAATGTTGTAGATATATCATCTCTGAAGAATATGAAACATGTTCATATCCTTCACGTTGTGGAATATTCTAATTTGGAGGAATTTGAAATTTATTGTGCAGAAAGAGCACATAAGGATCCTCGGATGTCAATGATGACGAATCACATGTGCTTCCTTGGCCTTCAGTTTGTACAAGATGCCGAAATCTTGGGAGAAGAATGTCCGGCGCTGAAGAAGTTGCCACTTAAAAGAGGACAAAGCATTCTACGTCACTTGGCCGACAATGGTGACCGGAAAGTCTGCTGTGAATTGTATAAAAGTAGTAGAATACATGATTTTACACAAAGCTCAAAGTATATAGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

224

Amino Acids

24.99

Weight (kDa)

7.1

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AasI	GACNNNNNNGTC	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	434, 447
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	404, 411
AcuI	CTGAAG	3 cut(s)	368, 470, 554
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	187, 495
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	2 cut(s)	361, 468
AgsI	TTSAA	2 cut(s)	251, 410
AluBI	AGCT	2 cut(s)	61, 651
AluI	AGCT	2 cut(s)	61, 651
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	434, 447
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	481, 579
ApoI	RAATTY	2 cut(s)	404, 411
AspLEI	GCGC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	433
BccI	CCATC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	441
BmsI	GCATC	3 cut(s)	146, 240, 490
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	443, 478
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	443, 478
BseGI	GGATG	2 cut(s)	156, 453
BseLI	CCNNNNNNNGG	1 cut(s)	86
BsgI	GTGCAG	2 cut(s)	116, 441
BshFI	GGCC	2 cut(s)	483, 581
BsiHKAI	GWGCWC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	527, 595
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	483, 581
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	483, 581
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	434, 447
BsrGI	TGTACA	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	443, 478
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	156, 453
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 480
BstNSI	RCATGY	2 cut(s)	365, 472
BstPI	GGTNACC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	483, 581
BtsCI	GGATG	2 cut(s)	156, 453
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	186, 494
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	4 cut(s)	269, 362, 469, 635
CviJI	RGCY	7 cut(s)	61, 69, 101, 273, 483, 581, 651
CviKI_1	RGCY	7 cut(s)	61, 69, 101, 273, 483, 581, 651
CviQI	GTAC	2 cut(s)	186, 494
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	478
Eco57I	CTGAAG	3 cut(s)	368, 470, 554
Eco88I	CYCGRG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	4 cut(s)	272, 365, 472, 638
FatI	CATG	4 cut(s)	268, 361, 468, 634
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	2 cut(s)	163, 460
GlaI	GCGC	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	483, 581
HapII	CCGG	2 cut(s)	527, 595
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	4 cut(s)	272, 365, 472, 638
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	226, 463
HpaII	CCGG	2 cut(s)	527, 595
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	183, 348, 447
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	383, 494
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	3 cut(s)	198, 378, 571
HpyCH4V	TGCA	5 cut(s)	97, 137, 195, 294, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 480
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	3 cut(s)	198, 378, 571
Hsp92II	CATG	4 cut(s)	272, 365, 472, 638
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	665
LpnPI	CCDG	5 cut(s)	32, 83, 93, 540, 608
LweI	GCATC	3 cut(s)	146, 240, 490
MaeII	ACGT	3 cut(s)	198, 378, 571
MaeIII	GTNAC	2 cut(s)	572, 590
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	5 cut(s)	254, 263, 361, 530, 547
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	6 cut(s)	26, 221, 394, 404, 411, 611
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	117, 270, 394, 453, 548
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	2 cut(s)	110, 549
MslI	CAYNNNNRTG	2 cut(s)	82, 324
MspI	CCGG	2 cut(s)	527, 595
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	428, 480
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	272, 365, 472, 638
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	572, 590
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	2 cut(s)	365, 472
PaeR7I	CTCGAG	1 cut(s)	298
PciI	ACATGT	2 cut(s)	361, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	86
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	2 cut(s)	361, 468
PsiI	TTATAA	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	441
PspXI	VCTCGAGB	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	187, 495
RsaNI	GTAC	2 cut(s)	186, 494
RseI	CAYNNNNRTG	2 cut(s)	82, 324
SaqAI	TTAA	2 cut(s)	110, 549
Sau3AI	GATC	1 cut(s)	439
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	6 cut(s)	63, 181, 201, 381, 574, 653
SfaNI	GCATC	3 cut(s)	146, 240, 490
Sfr274I	CTCGAG	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	82, 324
SmlI	CTYRAG	2 cut(s)	215, 298
SmoI	CTYRAG	2 cut(s)	215, 298
Sse9I	AATT	6 cut(s)	26, 221, 394, 404, 411, 611
SspI	AATATT	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	3 cut(s)	201, 381, 574
TaqI	TCGA	1 cut(s)	299
TasI	AATT	6 cut(s)	26, 221, 394, 404, 411, 611
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	110, 549
Tru9I	TTAA	2 cut(s)	110, 549
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	2 cut(s)	572, 590
Tsp45I	GTSAC	2 cut(s)	572, 590
TspDTI	ATGAA	3 cut(s)	225, 356, 371
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	86
XapI	RAATTY	2 cut(s)	404, 411
XceI	RCATGY	2 cut(s)	365, 472
XhoI	CTCGAG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.