Prupe.3G083300_v2.0.a1

3'-UTR-mediated mRNA destabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006416
Physical Location & Seq
Reverse (-)
6160292 .. 6160963
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G083300.1

Sequence Viewer

Length: 372 bp
ATGAGCGATTCTGGACCTACTTGCCAATTCTTTGCCCCATATCTTGAATCCGGAGACAACAGGCATCAACTAAAGCCTGAATTTCCTAATGCTGATAAAGATTTCAAAGATCACTCTGACATTGAAAGCCATCCTTTCAACAAACCCAAAACTTCTGAAGTCGTATTGATCTCTACGATTCCCATGGCGCAGAATAAAATGTTGCATTGTAATTTCAAAACCAGACTTTGCAATAACTTCAAAATGGGTAATTGCCATTATGGGCAGGGATGTTGTTTTGCCCATGGAATCAGTGATCTCCGCAAGACTTGGCGTAATTGGCAAGGACTGGAAACTGAGGAGGGCTTCAAGGCCAGGACTTATAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

124

Amino Acids

14.21

Weight (kDa)

7.65

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 177
AgsI TTSAA 7 cut(s) 47, 106, 125, 139, 217, 241, 349
AjnI CCWGG 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 183, 283
BsaWI WCCGGW 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 183, 283
BseGI GGATG 2 cut(s) 130, 275
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 353
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 109, 168, 295
Bsp19I CCATGG 2 cut(s) 183, 283
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 328
BspEI TCCGGA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 183, 283
BssMI GATC 3 cut(s) 109, 168, 295
BssT1I CCWWGG 2 cut(s) 183, 283
Bst2UI CCWGG 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 2 cut(s) 183, 283
BstF5I GGATG 2 cut(s) 130, 275
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 112, 171, 298
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 109, 168, 295
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 2 cut(s) 183, 283
BtsCI GGATG 2 cut(s) 130, 275
BtsIMutI CAGTG 1 cut(s) 298
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 2 cut(s) 184, 284
CviJI RGCY 4 cut(s) 76, 129, 345, 353
CviKI_1 RGCY 4 cut(s) 76, 129, 345, 353
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 111, 170, 297
DpnII GATC 3 cut(s) 109, 168, 295
Eco130I CCWWGG 2 cut(s) 183, 283
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 183, 283
ErhI CCWWGG 2 cut(s) 183, 283
FaeI CATG 2 cut(s) 187, 287
FaiI YATR 5 cut(s) 40, 185, 261, 285, 363
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 2 cut(s) 183, 283
FokI GGATG 2 cut(s) 117, 282
GlaI GCGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 187, 287
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 4 cut(s) 8, 47, 178, 288
HpaII CCGG 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 118, 157
Hpy188III TCNNGA 3 cut(s) 12, 44, 51
HpyCH4V TGCA 2 cut(s) 205, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 2 cut(s) 187, 287
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 3 cut(s) 109, 168, 295
LpnPI CCDG 8 cut(s) 46, 64, 90, 235, 251, 314, 340, 367
LweI GCATC 1 cut(s) 73
MalI GATC 3 cut(s) 111, 170, 297
MboI GATC 3 cut(s) 109, 168, 295
MluCI AATT 5 cut(s) 26, 80, 211, 250, 316
MnlI CCTC 2 cut(s) 331, 334
MroI TCCGGA 1 cut(s) 50
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 355
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 319
NcoI CCATGG 2 cut(s) 183, 283
NdeII GATC 3 cut(s) 109, 168, 295
NlaIII CATG 2 cut(s) 187, 287
PfeI GAWTC 4 cut(s) 8, 47, 178, 288
PsiI TTATAA 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspPI GGNCC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 109, 168, 295
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 355
SetI ASST 1 cut(s) 19
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 14
Sse9I AATT 5 cut(s) 26, 80, 211, 250, 316
SsiI CCGC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 2 cut(s) 183, 283
TasI AATT 5 cut(s) 26, 80, 211, 250, 316
TfiI GAWTC 4 cut(s) 8, 47, 178, 288
TscAI CASTG 1 cut(s) 298
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.