3'-UTR-mediated mRNA destabilization
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g30290 FvH4_6g30290 |
| malus_domestica | MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1 |
| prunus_persica | Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1 |
| pyrus_communis | pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900 |
| rosa_chinensis | RchiOBHm_Chr2g0136531 |
| rosa_laevigata | RLG00000019539 |
| rosa_multiflora | Rmu_sc0040875.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00108200 |
| rosa_rugosa | Rorug02G0331700 |
| rosa_samantha | Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800 |
| rosa_wichuraiana | Rw2G031260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 29 |
| AciI | CCGC | 2 cut(s) | 256, 394 |
| AcsI | RAATTY | 1 cut(s) | 59 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 50 |
| AgsI | TTSAA | 5 cut(s) | 14, 100, 196, 248, 361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 278, 310 |
| AluBI | AGCT | 2 cut(s) | 68, 95 |
| AluI | AGCT | 2 cut(s) | 68, 95 |
| Alw26I | GTCTC | 2 cut(s) | 118, 233 |
| ApoI | RAATTY | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| AsuII | TTCGAA | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BccI | CCATC | 1 cut(s) | 130 |
| BceAI | ACGGC | 1 cut(s) | 256 |
| BcoDI | GTCTC | 2 cut(s) | 118, 233 |
| BfuAI | ACCTGC | 1 cut(s) | 29 |
| BisI | GCNGC | 1 cut(s) | 394 |
| BlsI | GCNGC | 1 cut(s) | 395 |
| Bpu14I | TTCGAA | 1 cut(s) | 63 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 50 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BsmAI | GTCTC | 2 cut(s) | 118, 233 |
| Bsp119I | TTCGAA | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| BspACI | CCGC | 2 cut(s) | 256, 394 |
| BspCNI | CTCAG | 1 cut(s) | 298 |
| BspMI | ACCTGC | 1 cut(s) | 29 |
| BspT104I | TTCGAA | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstBI | TTCGAA | 1 cut(s) | 63 |
| BstDEI | CTNAG | 2 cut(s) | 117, 306 |
| BstMAI | GTCTC | 2 cut(s) | 118, 233 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| BveI | ACCTGC | 1 cut(s) | 29 |
| CviAII | CATG | 2 cut(s) | 292, 404 |
| CviJI | RGCY | 2 cut(s) | 68, 95 |
| CviKI_1 | RGCY | 2 cut(s) | 68, 95 |
| DdeI | CTNAG | 2 cut(s) | 117, 306 |
| EcoRI | GAATTC | 1 cut(s) | 59 |
| FaeI | CATG | 2 cut(s) | 295, 407 |
| FaiI | YATR | 7 cut(s) | 156, 216, 234, 293, 379, 381, 405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 341, 373 |
| FatI | CATG | 2 cut(s) | 291, 403 |
| FauNDI | CATATG | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 1 cut(s) | 394 |
| Fsp4HI | GCNGC | 1 cut(s) | 394 |
| GluI | GCNGC | 1 cut(s) | 394 |
| Hin1II | CATG | 2 cut(s) | 295, 407 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 3 cut(s) | 111, 131, 409 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy188I | TCNGA | 4 cut(s) | 45, 130, 414, 425 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 100, 358 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 4 cut(s) | 166, 186, 348, 375 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 306 |
| Hsp92II | CATG | 2 cut(s) | 295, 407 |
| LpnPI | CCDG | 2 cut(s) | 34, 121 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MboII | GAAGA | 3 cut(s) | 22, 162, 260 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 26, 59 |
| MlyI | GAGTC | 2 cut(s) | 120, 125 |
| MnlI | CCTC | 3 cut(s) | 43, 214, 358 |
| NdeI | CATATG | 1 cut(s) | 379 |
| NlaIII | CATG | 2 cut(s) | 295, 407 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 1 cut(s) | 295 |
| NspV | TTCGAA | 1 cut(s) | 63 |
| PfeI | GAWTC | 1 cut(s) | 409 |
| PkrI | GCNGC | 1 cut(s) | 395 |
| PleI | GAGTC | 2 cut(s) | 119, 125 |
| PpsI | GAGTC | 2 cut(s) | 119, 125 |
| SatI | GCNGC | 1 cut(s) | 394 |
| SchI | GAGTC | 2 cut(s) | 120, 125 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SetI | ASST | 4 cut(s) | 23, 70, 97, 123 |
| SfuI | TTCGAA | 1 cut(s) | 63 |
| Sse9I | AATT | 2 cut(s) | 26, 59 |
| SsiI | CCGC | 2 cut(s) | 256, 394 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaqI | TCGA | 3 cut(s) | 63, 134, 340 |
| TasI | AATT | 2 cut(s) | 26, 59 |
| TauI | GCSGC | 1 cut(s) | 396 |
| TfiI | GAWTC | 1 cut(s) | 409 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 1 cut(s) | 348 |
| TspRI | CASTG | 1 cut(s) | 85 |
| XapI | RAATTY | 1 cut(s) | 59 |
| XceI | RCATGY | 1 cut(s) | 295 |