Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

2671900 .. 2673589

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTCCTCTTTTCAAATTCTACTGAAACTCTTCATATCGTGATTCGTATAAGGTTGCCGCATCATGCACTCTTCTTTTCACTAAATTGTTCCTTGTATTTCTTGTTCGTTCAAAATGTAAGGTCTTTTTACGAGGATTATCATTTGATCATTCAGTTAATTATTTTTTTTTCTTTTGCAGGAATTAATTTACCTACTTCAGATATGATATTCGAGTCTCCAATGTCCTTCTTGGTGCACATATGCATAATGGAATTGACTGAGAAAGCTGAGGCATTGCATCTGCACACATTGGAGAGAGGCAGTCAACCAGATTATAAGACATGGGAGTTCCTTATGGAAGGAAGATTGTCATTGGAGACCATCGGACATTATGTAATGGCCTTTGCTGATTATTTCGAAAATCATGGGAACATTAAGCATGCCAATTGGTATACCAAATTGTGCACCGAAAGAAATTCTAAGAAATCCATGAAAGAAGTCTTTATAAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

166

Amino Acids

19.45

Weight (kDa)

6.18

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 488
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	3 cut(s)	16, 457, 490
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	15, 113
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	2 cut(s)	240, 449
Alw26I	GTCTC	2 cut(s)	222, 353
Alw44I	GTGCAC	2 cut(s)	236, 445
AoxI	GGCC	1 cut(s)	381
ApaLI	GTGCAC	2 cut(s)	236, 445
ApoI	RAATTY	3 cut(s)	16, 457, 490
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	240, 449
Bbv12I	GWGCWC	2 cut(s)	240, 449
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	371
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	222, 353
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	2 cut(s)	70, 289
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	252, 261
BseSI	GKGCMC	2 cut(s)	240, 449
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	240, 449
BsmAI	GTCTC	2 cut(s)	222, 353
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	240, 449
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	253, 262
BspT104I	TTCGAA	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	275
BssMI	GATC	1 cut(s)	147
BssNAI	GTATAC	1 cut(s)	435
Bst1107I	GTATAC	1 cut(s)	435
Bst6I	CTCTTC	2 cut(s)	36, 77
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	261, 270, 462
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	222, 353
BstMBI	GATC	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	425
BstSLI	GKGCMC	2 cut(s)	240, 449
BstZ17I	GTATAC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	5 cut(s)	65, 324, 407, 422, 472
CviJI	RGCY	2 cut(s)	269, 383
CviKI_1	RGCY	2 cut(s)	269, 383
DdeI	CTNAG	3 cut(s)	261, 270, 462
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	36, 77
EarI	CTCTTC	2 cut(s)	36, 77
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	248
FaeI	CATG	5 cut(s)	68, 327, 410, 425, 475
FatI	CATG	5 cut(s)	64, 323, 406, 421, 471
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	383
Hin1II	CATG	5 cut(s)	68, 327, 410, 425, 475
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HinfI	GANTC	2 cut(s)	43, 215
Hpy166II	GTNNAC	4 cut(s)	238, 308, 435, 447
Hpy188I	TCNGA	2 cut(s)	202, 368
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	4 cut(s)	238, 308, 435, 447
HpyAV	CCTTC	2 cut(s)	238, 335
HpyCH4V	TGCA	7 cut(s)	68, 179, 238, 246, 280, 286, 447
HpyF3I	CTNAG	3 cut(s)	261, 270, 462
Hsp92II	CATG	5 cut(s)	68, 327, 410, 425, 475
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	165, 324
LweI	GCATC	2 cut(s)	70, 289
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	23, 64, 357
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	240, 449
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	17, 127, 265, 293
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	158, 186, 417
MunI	CAATTG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	5 cut(s)	68, 327, 410, 425, 475
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	2 cut(s)	318, 488
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
SaqAI	TTAA	3 cut(s)	158, 186, 417
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	240, 449
SetI	ASST	4 cut(s)	56, 125, 196, 271
SfaNI	GCATC	2 cut(s)	70, 289
SfuI	TTCGAA	1 cut(s)	399
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	425
SsiI	CCGC	1 cut(s)	59
TaqI	TCGA	2 cut(s)	213, 399
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	158, 186, 417
Tru9I	TTAA	3 cut(s)	158, 186, 417
TspDTI	ATGAA	3 cut(s)	23, 483, 488
VneI	GTGCAC	2 cut(s)	236, 445
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	3 cut(s)	16, 457, 490
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.