Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

29537948 .. 29539714

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1136200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACAAAGCCATTGAAGCGATGAAAAAAGGGTTTAGTGTGTTGCAAGATTGTCATTGGAGGCCATCGGATGATACTGTAATCGCCTTTGCTGATTATTTCGAAAAGCATAGGAACATTGAGGATACAAATTGGTATATTGGAGTTATCCATTTATTTGGGTTTGCAAGTTTGACATTATACAAATCACTGCTTAGAATGCGCCTTTCTGCTCAGAGATCAGCCTCTGACATCCTGAAGATGATGGAGGAGGACAAAGTCGAGATAGATGAAGATACTTATGCCCTGGTTCAAGCCTTCAAGGTATTGGAACTAAGGAAGCTTTGTGGCTATACTACACCAGAATGTGGAAGTGTGCAGGCTAACAGTTTAACGACTTATACAAGGGGCAACAATGCATCAAATCTTAGGATGGGGATTTCGAATGCTTATAAACAAGGTCAGAGTACGCAGTGCAACTTAGAGTGGAATGAACTTGAGAAATTGAGTCGCATCTACGCTGATTGGATTGAAGATATGCCACTTCTACATGACTCATCAAGAAAAGTGGAGTGCTACTCGAGTTTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

191

Amino Acids

21.87

Weight (kDa)

5.42

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccB7I	CCANNNNNTGG	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	17, 293, 301, 512
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	204
AsuII	TTCGAA	2 cut(s)	102, 422
AvaI	CYCGRG	1 cut(s)	559
BccI	CCATC	3 cut(s)	73, 238, 406
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	407, 501
BplI	GAGNNNNNCTC	1 cut(s)	542
Bpu14I	TTCGAA	2 cut(s)	102, 422
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	76, 231, 417
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmI	GAATGC	2 cut(s)	204, 430
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	559
Bsp119I	TTCGAA	2 cut(s)	102, 422
Bsp143I	GATC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	226
BspT104I	TTCGAA	2 cut(s)	102, 422
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	79, 368
BstBI	TTCGAA	2 cut(s)	102, 422
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	5 cut(s)	194, 213, 314, 407, 460
BstF5I	GGATG	3 cut(s)	76, 231, 417
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 199
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	76, 231, 417
BtsI	GCAGTG	2 cut(s)	188, 458
BtsIMutI	CAGTG	2 cut(s)	188, 458
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	7 cut(s)	11, 64, 224, 296, 322, 330, 362
CviKI_1	RGCY	7 cut(s)	11, 64, 224, 296, 322, 330, 362
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	5 cut(s)	194, 213, 314, 407, 460
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	1 cut(s)	533
FatI	CATG	1 cut(s)	529
FokI	GGATG	3 cut(s)	83, 218, 424
GlaI	GCGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	487, 533
Hpy188I	TCNGA	4 cut(s)	70, 216, 229, 444
Hpy188III	TCNNGA	3 cut(s)	235, 262, 540
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	79, 368
HpyCH4V	TGCA	5 cut(s)	46, 167, 358, 398, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 199
HpyF3I	CTNAG	5 cut(s)	194, 213, 314, 407, 460
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	5 cut(s)	248, 272, 299, 344, 354
LweI	GCATC	2 cut(s)	407, 501
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	250, 284, 524
MluCI	AATT	2 cut(s)	130, 482
MlyI	GAGTC	2 cut(s)	496, 527
MnlI	CCTC	5 cut(s)	54, 115, 235, 241, 244
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	2 cut(s)	204, 430
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	17, 199
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	400
NspV	TTCGAA	2 cut(s)	102, 422
PaeR7I	CTCGAG	1 cut(s)	559
PctI	GAATGC	2 cut(s)	204, 430
PflFI	GACNNNGTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	347
PleI	GAGTC	2 cut(s)	495, 527
PpsI	GAGTC	2 cut(s)	495, 527
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspXI	VCTCGAGB	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	496, 527
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	3 cut(s)	306, 324, 442
SfaNI	GCATC	2 cut(s)	407, 501
Sfr274I	CTCGAG	1 cut(s)	559
SfuI	TTCGAA	2 cut(s)	102, 422
SlaI	CTCGAG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	476, 559
SmoI	CTYRAG	2 cut(s)	476, 559
Sse9I	AATT	2 cut(s)	130, 482
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	79, 368
TaqI	TCGA	4 cut(s)	102, 261, 422, 560
TasI	AATT	2 cut(s)	130, 482
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	195, 458
TspDTI	ATGAA	3 cut(s)	38, 285, 486
TspRI	CASTG	2 cut(s)	195, 458
Tth111I	GACNNNGTC	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.