Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

16428761 .. 16429550

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCGGAATGGAATGACTGAGAAAGCTGAGGCCTTGCTTCTGCACACATTGGAGAAAGGCGGTCAACCAAATTATAAGACATGGGAGATCCTTATGGAAGGAAGGTTGAAAAGCAACATGGACAAAGCCGTTGAAGCGATGAAAAAAGGGTTTAGTGTGTTGCAAGATTGTCGTTGGAGGCCATCAGATGATACTGTAATCGCCTTTGCTGATTATTTCGAAAAGCATAGGAACATTGAGGATGCAAATTGGTATATCAGAGTTATCCATTTATTTGGTTTTGCAAGTTTGACATTATACAAATCACTGCCTAGAATGCGCCTTTCTGCTCAGAGATCAGCCTCTGACATCCTGAAGATGATGGAGGAGGACAAAGTCGAGATAGTTGAAGATACTTATGCCCTGGTTCAAGCCTTCAAGGCTTCCTATGAAGGCTCACAGGACAGGTTAATGCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

6.32

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AciI	CCGC	2 cut(s)	4, 60
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	109, 134, 389, 410, 418
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	30, 179
AspLEI	GCGC	1 cut(s)	321
AsuII	TTCGAA	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	190, 355
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	312
BglI	GCCNNNNNGGC	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	247, 348
BseMII	CTCAG	3 cut(s)	9, 18, 344
BseRI	GAGGAG	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	32, 181
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	32, 181
Bsp119I	TTCGAA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	87, 335
BspACI	CCGC	2 cut(s)	4, 60
BspANI	GGCC	2 cut(s)	32, 181
BspCNI	CTCAG	3 cut(s)	10, 19, 343
BspPI	GGATC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	87, 335
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	18, 27, 330
BstF5I	GGATG	2 cut(s)	247, 348
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	2 cut(s)	90, 338
BstMBI	GATC	2 cut(s)	87, 335
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 316, 419
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	32, 181
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	247, 348
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	321
CviAII	CATG	2 cut(s)	81, 118
CviJI	RGCY	8 cut(s)	26, 32, 128, 181, 341, 413, 422, 435
CviKI_1	RGCY	8 cut(s)	26, 32, 128, 181, 341, 413, 422, 435
DdeI	CTNAG	3 cut(s)	18, 27, 330
DpnI	GATC	2 cut(s)	89, 337
DpnII	GATC	2 cut(s)	87, 335
Eco147I	AGGCCT	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	84, 121
FaiI	YATR	9 cut(s)	75, 82, 95, 119, 228, 255, 298, 399, 429
FatI	CATG	2 cut(s)	80, 117
FokI	GGATG	2 cut(s)	254, 335
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	32, 181
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	84, 121
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	5 cut(s)	187, 260, 333, 346, 461
Hpy188III	TCNNGA	2 cut(s)	352, 379
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	92, 96, 424, 425
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	43, 163, 245, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 316, 419
HpyF3I	CTNAG	3 cut(s)	18, 27, 330
Hsp92II	CATG	2 cut(s)	84, 121
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	87, 335
LpnPI	CCDG	5 cut(s)	365, 389, 416, 425, 430
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	312
MalI	GATC	2 cut(s)	89, 337
MboI	GATC	2 cut(s)	87, 335
MboII	GAAGA	2 cut(s)	367, 401
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	2 cut(s)	70, 247
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	22, 171, 232, 352, 358, 361
MseI	TTAA	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	134, 316, 419
NdeII	GATC	2 cut(s)	87, 335
NlaIII	CATG	2 cut(s)	84, 121
NspV	TTCGAA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	32
PctI	GAATGC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	449
Sau3AI	GATC	2 cut(s)	87, 335
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	3 cut(s)	28, 107, 449
SfaNI	GCATC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	219
Sse9I	AATT	2 cut(s)	70, 247
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	4, 60
SspMI	CTAG	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	219, 378
TasI	AATT	2 cut(s)	70, 247
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	155, 444
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.