Prupe.3G080700_v2.0.a1

3'-UTR-mediated mRNA destabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006416
Physical Location & Seq
Forward (+)
5997926 .. 6001131
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G080700.1

Sequence Viewer

Length: 714 bp
ATGAGCGATTCTGGACCTACTTGCCAATTCTTTGCCCCATATCTTGAATCCGGTGACAACAAGCATCAACTAAAGCCTGAATTTCCTAATGCTGATAAAGATTTCAAAGATCACTCTGACATTGAAAGCCATCCTTTCAAGAAACCCAAAACTTCTGAAGTTGTATTGATCTCTACGATGCCCATGGCGCAGAATAAAATGTTGCCTTGTAATTTCAAAACCAGACTTTGCAATAACTTCAAAATGGGTAATTGCCATTATGGGCAGGGATGTTGTTTTGCCCATGGAATCAGTGATCTCCGCAAGACTTGGCGTAATTGGCAAGGACTGGAAACTCAGGAGGGCTTCAAGGCCAGGACTTGTGATCATAGAAGAACTTCTGATGATGTTTGCAGATTGTTCTTTAATGGGGGAAAATGCACATATGGAGACAAGTGCCGCTATCCTCATCATGTAACTCCTGAAAACATCAGAGAGAAGTCAGCGATAAGCATTTCAACTACTGTGGAATCAAGAAGTGTGCAGAATTTGAGGACTTCTTCTACAAGTATGTCAAAACGTAGGATGGGAATTGGGGCTACTTATCATAAACAAGTGCAGGGTATGGAATGCAACTTCAAGTGGAACAAACTCGAGAAAATGAGTCGCATCTATGCTGATTGGATTGAAGATATCCCTCTTGTACATGGCTCATCAAGCAAAGCGGAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

238

Amino Acids

27.15

Weight (kDa)

8.96

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 301, 439, 704
AcsI RAATTY 2 cut(s) 80, 526
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 684
AjnI CCWGG 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 80, 526
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 14
BccI CCATC 2 cut(s) 138, 559
BciT130I CCWGG 1 cut(s) 355
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 423
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 73, 168, 657
BsaJI CCNNGG 2 cut(s) 183, 283
BsaWI WCCGGW 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 183, 283
BseGI GGATG 3 cut(s) 130, 275, 570
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 333
BsgI GTGCAG 2 cut(s) 542, 617
BshFI GGCC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 632
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 4 cut(s) 109, 168, 295, 364
Bsp19I CCATGG 2 cut(s) 183, 283
BspACI CCGC 3 cut(s) 301, 439, 704
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 183, 283
BssMI GATC 4 cut(s) 109, 168, 295, 364
BssT1I CCWWGG 2 cut(s) 183, 283
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 682
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 2 cut(s) 183, 283
BstF5I GGATG 3 cut(s) 130, 275, 570
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 4 cut(s) 112, 171, 298, 367
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 4 cut(s) 109, 168, 295, 364
BstMWI GCNNNNNNNGC 3 cut(s) 187, 319, 696
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 2 cut(s) 183, 283
BtsCI GGATG 3 cut(s) 130, 275, 570
BtsIMutI CAGTG 1 cut(s) 298
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 683
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 4 cut(s) 184, 284, 452, 686
CviJI RGCY 6 cut(s) 76, 129, 345, 353, 578, 690
CviKI_1 RGCY 6 cut(s) 76, 129, 345, 353, 578, 690
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 1 cut(s) 336
DpnI GATC 4 cut(s) 111, 170, 297, 366
DpnII GATC 4 cut(s) 109, 168, 295, 364
Eco130I CCWWGG 2 cut(s) 183, 283
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 353
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 183, 283
ErhI CCWWGG 2 cut(s) 183, 283
FaeI CATG 4 cut(s) 187, 287, 455, 689
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 4 cut(s) 183, 283, 451, 685
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 3 cut(s) 117, 282, 577
Fsp4HI GCNGC 1 cut(s) 439
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 439
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 190
Hin1II CATG 4 cut(s) 187, 287, 455, 689
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 5 cut(s) 8, 47, 288, 509, 643
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 4 cut(s) 118, 157, 382, 473
Hpy188III TCNNGA 7 cut(s) 12, 44, 139, 338, 461, 513, 634
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 6 cut(s) 231, 393, 420, 523, 598, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 319, 696
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 4 cut(s) 187, 287, 455, 689
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 4 cut(s) 109, 168, 295, 364
LweI GCATC 3 cut(s) 73, 168, 657
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 2 cut(s) 53, 454
MalI GATC 4 cut(s) 111, 170, 297, 366
MboI GATC 4 cut(s) 109, 168, 295, 364
MboII GAAGA 3 cut(s) 384, 531, 680
MluCI AATT 7 cut(s) 26, 80, 211, 250, 316, 526, 570
MlyI GAGTC 1 cut(s) 652
MnlI CCTC 4 cut(s) 334, 456, 525, 687
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 1 cut(s) 405
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 187, 319, 696
NcoI CCATGG 2 cut(s) 183, 283
NdeI CATATG 1 cut(s) 424
NdeII GATC 4 cut(s) 109, 168, 295, 364
NlaIII CATG 4 cut(s) 187, 287, 455, 689
NmuCI GTSAC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 632
PctI GAATGC 1 cut(s) 614
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 4 cut(s) 8, 47, 288, 509
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 4 cut(s) 109, 168, 295, 364
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 1 cut(s) 355
SetI ASST 2 cut(s) 19, 562
SfaNI GCATC 3 cut(s) 73, 168, 657
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 7 cut(s) 26, 80, 211, 250, 316, 526, 570
SsiI CCGC 3 cut(s) 301, 439, 704
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 2 cut(s) 183, 283
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 633
TasI AATT 7 cut(s) 26, 80, 211, 250, 316, 526, 570
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 4 cut(s) 8, 47, 288, 509
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 2 cut(s) 80, 526
XhoI CTCGAG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.