Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

5919112 .. 5923158

Gene Structure 4047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G080200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCGATTCTGGACCTACTTGCCAATTCTTTGCCCCATATCTTGAATCCGGTGACAACAGGCATCAACTAAAGCCTGAATTTCCTAATGCTGATAAAGATTTCAAAGATCACTCTGACATTGAAAGCCATCCTTTCAAGAAACGCAAAACTTCTGAAGTCGTATTGATCTCTACGATTCCCATGGCGCAGAATAAAGTGTTGCATTGTAATTTCAAAACCAGACTTTGCAACAACTTCAAAATGGGTAATTGCCATTATGGGCAGGGATGTTGTTTTGCCCATGGAATCAGTGATCTCCGCAAGACTTGGCGTCATTGGCAAGGACTGGAAACTGAGGAGGGCTTCAAGGCCAGGACTTATGATCATAGAAGAACTTCTAATGATGTATGCAGATTGTTCTTTAATGGGGGAAAATGCTCATATGGAGACAAATGCCGCTATCCTCATCATGTAACTCCTGAAAGCATCAGAGAGAAGTCAGCGATAAGCATTTCAACTACTGGGGCTCACATGGGTGGTTCTGGTCAATTTTACAGCAAGAGGTCTTTGGTGGAATCTAGAAGTGTGCAGAATTCGAGGACTTCTTCTACAAGTATGTCAAAACGTAGGATGGGAATTGGGGCTACTTATCATAAACAAGTGCAGGGTATGGAATGCAACTTCAAATGGAACGAACTCGAGAAAATGAGTCGCATCTATGCTGATTGGATTGAAGATATCCCCCTTGTACATGGCTCATCAAGCAAAGCGGAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

254

Amino Acids

28.91

Weight (kDa)

9.08

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	301, 439, 752
AcsI	RAATTY	2 cut(s)	80, 574
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	1 cut(s)	732
AhdI	GACNNNNNGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	353
AleI	CACNNNNGTG	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	351
ApoI	RAATTY	2 cut(s)	80, 574
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	511
BccI	CCATC	2 cut(s)	138, 607
BciT130I	CCWGG	1 cut(s)	355
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	561
BisI	GCNGC	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	14
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	73, 477, 705
BmuI	ACTGGG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	183, 283
BsaWI	WCCGGW	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	333, 508
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	183, 283
BseGI	GGATG	3 cut(s)	130, 275, 618
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	333, 508
BseRI	GAGGAG	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	590, 665
BshFI	GGCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	109, 168, 295, 364
Bsp19I	CCATGG	2 cut(s)	183, 283
BspACI	CCGC	3 cut(s)	301, 439, 752
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	333, 508
BssECI	CCNNGG	2 cut(s)	183, 283
BssMI	GATC	4 cut(s)	109, 168, 295, 364
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	183, 283
Bst2UI	CCWGG	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	730
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	2 cut(s)	183, 283
BstF5I	GGATG	3 cut(s)	130, 275, 618
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	4 cut(s)	112, 171, 298, 367
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	4 cut(s)	109, 168, 295, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 744
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	2 cut(s)	183, 283
BtsCI	GGATG	3 cut(s)	130, 275, 618
BtsIMutI	CAGTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	5 cut(s)	184, 284, 452, 514, 734
CviJI	RGCY	7 cut(s)	76, 129, 345, 353, 509, 626, 738
CviKI_1	RGCY	7 cut(s)	76, 129, 345, 353, 509, 626, 738
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	111, 170, 297, 366
DpnII	GATC	4 cut(s)	109, 168, 295, 364
DriI	GACNNNNNGTC	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	183, 283
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	183, 283
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	2 cut(s)	183, 283
FaeI	CATG	5 cut(s)	187, 287, 455, 517, 737
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	5 cut(s)	183, 283, 451, 513, 733
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	3 cut(s)	117, 282, 625
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	187, 287, 455, 517, 737
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	6 cut(s)	8, 47, 178, 288, 557, 691
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	118, 157, 473
Hpy188III	TCNNGA	6 cut(s)	12, 44, 139, 461, 561, 682
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	6 cut(s)	205, 231, 393, 571, 646, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 744
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	5 cut(s)	187, 287, 455, 517, 737
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	109, 168, 295, 364
LweI	GCATC	3 cut(s)	73, 477, 705
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	53, 454
MalI	GATC	4 cut(s)	111, 170, 297, 366
MboI	GATC	4 cut(s)	109, 168, 295, 364
MboII	GAAGA	3 cut(s)	384, 579, 728
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	7 cut(s)	26, 80, 211, 250, 530, 574, 618
MlyI	GAGTC	1 cut(s)	700
MnlI	CCTC	5 cut(s)	331, 334, 456, 537, 573
MroXI	GAANNNNTTC	1 cut(s)	376
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	319, 744
NcoI	CCATGG	2 cut(s)	183, 283
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	109, 168, 295, 364
NlaIII	CATG	5 cut(s)	187, 287, 455, 517, 737
NmuCI	GTSAC	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	680
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	5 cut(s)	8, 47, 178, 288, 557
PkrI	GCNGC	1 cut(s)	440
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	4 cut(s)	109, 168, 295, 364
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	3 cut(s)	19, 548, 610
SfaNI	GCATC	3 cut(s)	73, 477, 705
Sfr274I	CTCGAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	26, 80, 211, 250, 530, 574, 618
SsiI	CCGC	3 cut(s)	301, 439, 752
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	183, 283
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	578, 681
TasI	AATT	7 cut(s)	26, 80, 211, 250, 530, 574, 618
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	5 cut(s)	8, 47, 178, 288, 557
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	2 cut(s)	80, 574
XbaI	TCTAGA	1 cut(s)	560
XhoI	CTCGAG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.