Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Reverse (-)

41140393 .. 41144197

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCATCAAACCCTTCTCTCACTGACTGCCTCCTCTCATTCGTGTTCGAAGGCTTCAATCCAATCCCCAGATTTTCGTACCAGGCTCTGAAAATCGAAAGCTTTCCAGGTACTAAAGCTTGGGCTACTTTTGATAGCGAAGACAGTTCGATTTTGCTGATCAACCAAGAAGCTTCTCCCATAACTGAAATAGGCGGGAAAGAGACCGGTCTTGGGTGGGATCACAAGAAACGGACTATTGATGCATCCGAGGAGTGGTGGCGTGGCAAAATTGAGAAAAACAAGGAATATGCAAAGTTGAAGAAAAAGGGGATTACACCCGAGTTTGAAGTCAAGTTGGATAAGATGTTCATGGGTATTGCAGCCACCGGAAAGCATGCATATGCACCATCTTCTACACTACCCATTCCTAAAAGTCCAGAGCAAGGTGGCAACCTTGAAGGTAGTGGTGACTCTGAGGACAATGATCAACATAAAACCACTCTACCTAAAAGAAAAAGAAATGAGAGAGCTGAGAAAGGTAAAGGAGAAAGACCAAAAAAGGAAAAGGTGGGAGGTGCTGCTCATTTGGCTAAACAAATTGACCAAATGTGTGAGTCAATTGAGAGTACAAGTACAGCAACTTCAATGATCAATACAGGTGTGCAGGAAGGTGGAGGGACTAGTATTAAGGAAGTGATGAAGGATGTCTCTTCATTGCCTGGAGCTGAGCAGGGTAGTAGGTTGTGGTTTTTTACCACCCGATTGTTTTTAAGTTCAGAGAAGAGAGAGATGTATTGCACCATGGACGATCCTAACTTGAAGGTGGAGTGGCTGAAATTTGAGATGAATGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

279

Amino Acids

31.14

Weight (kDa)

6.49

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	228, 785
AcsI	RAATTY	1 cut(s)	818
AfaI	GTAC	4 cut(s)	80, 112, 610, 616
AfiI	CCNNNNNNNGG	3 cut(s)	213, 255, 425
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	6 cut(s)	58, 301, 329, 440, 627, 802
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	3 cut(s)	81, 106, 700
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	5 cut(s)	102, 119, 173, 512, 707
AluI	AGCT	5 cut(s)	102, 119, 173, 512, 707
Alw26I	GTCTC	2 cut(s)	197, 694
AlwI	GGATC	2 cut(s)	228, 785
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	362, 560
ApoI	RAATTY	1 cut(s)	818
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	461
AsuII	TTCGAA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	607, 639
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	374, 547
BccI	CCATC	2 cut(s)	13, 397
BciT130I	CCWGG	3 cut(s)	83, 108, 702
BclI	TGATCA	3 cut(s)	159, 466, 630
BcoDI	GTCTC	2 cut(s)	197, 694
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	1 cut(s)	663
BisI	GCNGC	2 cut(s)	363, 561
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	2 cut(s)	364, 562
Bme1390I	CCNGG	3 cut(s)	83, 108, 702
BmeT110I	CYCGRG	1 cut(s)	320
BmrFI	CCNGG	3 cut(s)	83, 108, 702
BmsI	GCATC	2 cut(s)	232, 254
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	249, 783
BsaWI	WCCGGW	2 cut(s)	206, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 255, 425
Bse118I	RCCGGY	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	695
BseBI	CCWGG	3 cut(s)	83, 108, 702
BseDI	CCNNGG	2 cut(s)	249, 783
BseGI	GGATG	2 cut(s)	245, 691
BseLI	CCNNNNNNNGG	3 cut(s)	213, 255, 425
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	3 cut(s)	447, 504, 699
BseRI	GAGGAG	2 cut(s)	23, 266
BseXI	GCAGC	2 cut(s)	374, 547
BsgI	GTGCAG	1 cut(s)	665
BshTI	ACCGGT	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	207, 369
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	213, 255, 425
BsmAI	GTCTC	2 cut(s)	197, 694
BsmFI	GGGAC	1 cut(s)	673
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	320
Bsp119I	TTCGAA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	159, 220, 466, 630, 790
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	448, 505, 700
BspPI	GGATC	2 cut(s)	228, 785
BspT104I	TTCGAA	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	249, 783
BssMI	GATC	5 cut(s)	159, 220, 466, 630, 790
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	3 cut(s)	83, 108, 702
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	697, 758
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	456, 513, 708
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	245, 691
BstKTI	GATC	5 cut(s)	162, 223, 469, 633, 793
BstMAI	GTCTC	2 cut(s)	197, 694
BstMBI	GATC	5 cut(s)	159, 220, 466, 630, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	3 cut(s)	83, 108, 702
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	81, 106, 700
BstV1I	GCAGC	2 cut(s)	374, 547
BstV2I	GAAGAC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	245, 691
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	206
Csp6I	GTAC	4 cut(s)	79, 111, 609, 615
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	3 cut(s)	352, 377, 784
CviQI	GTAC	4 cut(s)	79, 111, 609, 615
DdeI	CTNAG	3 cut(s)	456, 513, 708
DpnI	GATC	5 cut(s)	161, 222, 468, 632, 792
DpnII	GATC	5 cut(s)	159, 220, 466, 630, 790
Eam1104I	CTCTTC	2 cut(s)	697, 758
EarI	CTCTTC	2 cut(s)	697, 758
Eco130I	CCWWGG	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	81, 106, 700
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	2 cut(s)	247, 382
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	355, 380, 787
FaiI	YATR	8 cut(s)	182, 291, 353, 378, 382, 384, 474, 785
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	351, 376, 783
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	3 cut(s)	159, 466, 630
Fnu4HI	GCNGC	2 cut(s)	363, 561
FokI	GGATG	2 cut(s)	232, 698
Fsp4HI	GCNGC	2 cut(s)	363, 561
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	2 cut(s)	363, 561
GsuI	CTGGAG	1 cut(s)	723
HapII	CCGG	2 cut(s)	207, 369
Hin1II	CATG	3 cut(s)	355, 380, 787
HindIII	AAGCTT	3 cut(s)	100, 117, 171
HinfI	GANTC	2 cut(s)	452, 596
HpaII	CCGG	2 cut(s)	207, 369
HphI	GGTGA	1 cut(s)	461
Hpy188I	TCNGA	4 cut(s)	90, 250, 457, 760
Hpy188III	TCNNGA	1 cut(s)	419
HpyAV	CCTTC	6 cut(s)	24, 44, 434, 644, 676, 796
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	245, 293, 362, 380, 386, 646, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	3 cut(s)	456, 513, 708
Hsp92II	CATG	3 cut(s)	355, 380, 787
Ksp22I	TGATCA	3 cut(s)	159, 466, 630
Kzo9I	GATC	5 cut(s)	159, 220, 466, 630, 790
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	2 cut(s)	374, 547
LweI	GCATC	2 cut(s)	232, 254
MaeI	CTAG	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	5 cut(s)	161, 222, 468, 632, 792
MboI	GATC	5 cut(s)	159, 220, 466, 630, 790
MboII	GAAGA	5 cut(s)	152, 313, 384, 684, 775
MfeI	CAATTG	1 cut(s)	600
MluCI	AATT	4 cut(s)	270, 579, 600, 818
MlyI	GAGTC	2 cut(s)	446, 605
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	41, 44, 244, 451, 548, 650
Mph1103I	ATGCAT	2 cut(s)	247, 382
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	2 cut(s)	669, 752
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	2 cut(s)	207, 369
MspR9I	CCNGG	3 cut(s)	83, 108, 702
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	3 cut(s)	83, 108, 702
MwoI	GCNNNNNNNGC	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	5 cut(s)	159, 220, 466, 630, 790
NlaIII	CATG	3 cut(s)	355, 380, 787
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	2 cut(s)	247, 382
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	364, 562
PleI	GAGTC	2 cut(s)	446, 604
PpsI	GAGTC	2 cut(s)	446, 604
Psp6I	CCWGG	3 cut(s)	81, 106, 700
PspGI	CCWGG	3 cut(s)	81, 106, 700
PstNI	CAGNNNCTG	1 cut(s)	88
RsaI	GTAC	4 cut(s)	80, 112, 610, 616
RsaNI	GTAC	4 cut(s)	79, 111, 609, 615
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	669, 752
SatI	GCNGC	2 cut(s)	363, 561
Sau3AI	GATC	5 cut(s)	159, 220, 466, 630, 790
SchI	GAGTC	2 cut(s)	446, 605
ScrFI	CCNGG	3 cut(s)	83, 108, 702
SfaNI	GCATC	2 cut(s)	232, 254
SfuI	TTCGAA	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	662
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	4 cut(s)	270, 579, 600, 818
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	81, 106, 700
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	48, 96, 149
TasI	AATT	4 cut(s)	270, 579, 600, 818
TatI	WGTACW	2 cut(s)	608, 614
Tru1I	TTAA	2 cut(s)	669, 752
Tru9I	TTAA	2 cut(s)	669, 752
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	362, 560
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	340, 684, 695
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	818
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	663
Zsp2I	ATGCAT	2 cut(s)	247, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.