Rh2DG405800

3'-UTR-mediated mRNA destabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006416
Physical Location & Seq
Reverse (-)
58930815 .. 58933129
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG405800.1

Sequence Viewer

Length: 807 bp
ATGAGTAATCTTCAATCAACCTGCCAATTCTTCACTCCACTTCCGAGAGAGGGTCAAGAATTCGAAGCTTTATCGGACACTGAACACCACCAAGCTTTCAAGAAACCCAGAGTCTCTAAGGTGGGGTCAGACTCGATGGTTATTGAGAGAAGATATAAGACCCGACTGTGCAATAACTTCAAACGGGGTAGTTGCCATTATGGTGAGGCATGTCTCTATGCTCACGGCATTGAAGAAATCCGCAACACTTTCGGTAGTTCGGCGAATGAGAAGGGCATGTTGGGTAGGACTGAGTTTGCTCGTCACAGAACTTGTGATGAACTTCGGCTGTGTAAGTTGTTCTTGAATGAGGGGAAATGCACATATGGAGAGAAATGCCGCTTTCGTCATGTGATTCCGAAAAGTATCAGAGATGAGTCGGTGATCATTTTGACTAGTGGGTCTAAAGGGTCTCAAATTAGTGGCTCTGGGCAATTTGGGGGCAAGAGGTCTCTGGGTTTGGATGTTGACACTAATGGAGTGAGTGGAGACGGGCATTTTAGGCAACAAAGCTCTGTTGCAGCTGGGAGAGGGATGCTGAGTAATACCTGCATAGCTAGTGGAACCTTTGCTCATGGACATGCCGTGCTCAGGAAGCTCTGTGGCTACACTACCGTGGAGACTAAACATTTAAAGACTTTTACTACTTCTAGGGAATTGCAAGTTACGGACGGCAACTTCAACTGGAATGAACTTGAGAAAATGAGTCGCATCTATGCTGATTGGATTGAAGAAATTCCTCTTGTACATAGGAAGATGGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

268

Amino Acids

30.16

Weight (kDa)

8.99

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 52 - 76 2.7e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L PF25585 109 - 130 5.8e-06 DUS3L CCCH zinc finger domain
zf-CCCH_4 PF18044 109 - 130 6.2e-07 CCCH-type zinc finger
zf_CCCH_4 PF18345 111 - 130 5.9e-07 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
Acc36I ACCTGC 2 cut(s) 29, 596
AciI CCGC 2 cut(s) 241, 379
AcsI RAATTY 2 cut(s) 59, 774
AfaI GTAC 1 cut(s) 786
AfiI CCNNNNNNNGG 2 cut(s) 50, 630
AgsI TTSAA 7 cut(s) 14, 100, 181, 233, 346, 721, 770
AhlI ACTAGT 1 cut(s) 434
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 6 cut(s) 68, 95, 552, 563, 596, 637
AluI AGCT 6 cut(s) 68, 95, 552, 563, 596, 637
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 6 cut(s) 118, 218, 456, 495, 522, 653
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 2 cut(s) 59, 774
Asp700I GAANNNNTTC 1 cut(s) 774
AsuHPI GGTGA 2 cut(s) 215, 433
AsuII TTCGAA 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 130, 790
BceAI ACGGC 3 cut(s) 241, 608, 727
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 6 cut(s) 118, 218, 456, 495, 522, 653
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 3 cut(s) 435, 597, 690
BfuAI ACCTGC 2 cut(s) 29, 596
BisI GCNGC 2 cut(s) 379, 561
BlsI GCNGC 2 cut(s) 380, 562
BmiI GGNNCC 1 cut(s) 604
BmsI GCATC 2 cut(s) 564, 759
Bpu10I CCTNAGC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 755
BsaI GGTCTC 2 cut(s) 456, 495
BsaJI CCNNGG 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 630
Bse1I ACTGG 1 cut(s) 728
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 2 cut(s) 508, 579
BseLI CCNNNNNNNGG 2 cut(s) 50, 630
BseMII CTCAG 3 cut(s) 282, 569, 643
BseNI ACTGG 1 cut(s) 728
BseXI GCAGC 1 cut(s) 572
BseYI CCCAGC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 630
BslI CCNNNNNNNGG 2 cut(s) 50, 630
BsmAI GTCTC 6 cut(s) 118, 218, 456, 495, 522, 653
BsmBI CGTCTC 1 cut(s) 522
Bso31I GGTCTC 2 cut(s) 456, 495
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 1 cut(s) 423
BspACI CCGC 2 cut(s) 241, 379
BspCNI CTCAG 3 cut(s) 283, 570, 642
BspLI GGNNCC 1 cut(s) 604
BspMI ACCTGC 2 cut(s) 29, 596
BspT104I TTCGAA 1 cut(s) 63
BspTNI GGTCTC 2 cut(s) 456, 495
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 1 cut(s) 728
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 168, 655
BstAUI TGTACA 1 cut(s) 784
BstBI TTCGAA 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 117, 291, 578, 629
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 508, 579
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 6 cut(s) 118, 218, 456, 495, 522, 653
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 2 cut(s) 541, 634
BstNSI RCATGY 3 cut(s) 213, 280, 623
BstV1I GCAGC 1 cut(s) 572
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 508, 579
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 2 cut(s) 29, 596
Csp6I GTAC 1 cut(s) 785
CviAII CATG 5 cut(s) 210, 277, 389, 614, 620
CviJI RGCY 9 cut(s) 68, 95, 328, 465, 552, 563, 596, 637, 645
CviKI_1 RGCY 9 cut(s) 68, 95, 328, 465, 552, 563, 596, 637, 645
CviQI GTAC 1 cut(s) 785
DdeI CTNAG 4 cut(s) 117, 291, 578, 629
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
DraI TTTAAA 1 cut(s) 672
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
Eco31I GGTCTC 2 cut(s) 456, 495
EcoRI GAATTC 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 5 cut(s) 213, 280, 392, 617, 623
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 5 cut(s) 209, 276, 388, 613, 619
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 379, 561
FokI GGATG 2 cut(s) 515, 586
Fsp4HI GCNGC 2 cut(s) 379, 561
FspBI CTAG 3 cut(s) 435, 597, 690
GluI GCNGC 2 cut(s) 379, 561
GsaI CCCAGC 1 cut(s) 567
Hin1II CATG 5 cut(s) 213, 280, 392, 617, 623
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 2 cut(s) 66, 93
HinfI GANTC 5 cut(s) 111, 131, 394, 416, 745
HphI GGTGA 2 cut(s) 215, 433
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 6 cut(s) 45, 76, 130, 399, 410, 806
Hpy188III TCNNGA 4 cut(s) 56, 100, 343, 631
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 168, 655
HpyCH4V TGCA 5 cut(s) 171, 360, 560, 591, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 634
HpyF3I CTNAG 4 cut(s) 117, 291, 578, 629
Hsp92II CATG 5 cut(s) 213, 280, 392, 617, 623
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 1 cut(s) 423
LpnPI CCDG 8 cut(s) 34, 121, 453, 479, 549, 601, 616, 709
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 2 cut(s) 564, 759
MaeI CTAG 3 cut(s) 435, 597, 690
MaeIII GTNAC 2 cut(s) 302, 703
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 5 cut(s) 22, 162, 245, 782, 805
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 6 cut(s) 26, 59, 456, 473, 695, 774
MlyI GAGTC 4 cut(s) 120, 125, 425, 754
MnlI CCTC 6 cut(s) 43, 199, 343, 480, 563, 789
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 1 cut(s) 671
MslI CAYNNNNRTG 3 cut(s) 201, 618, 653
MspA1I CMGCKG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 541, 634
NdeI CATATG 1 cut(s) 364
NdeII GATC 1 cut(s) 423
NlaIII CATG 5 cut(s) 213, 280, 392, 617, 623
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 3 cut(s) 213, 280, 623
NspV TTCGAA 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 380, 562
PleI GAGTC 4 cut(s) 119, 125, 424, 753
PpsI GAGTC 4 cut(s) 119, 125, 424, 753
PspFI CCCAGC 1 cut(s) 563
PspN4I GGNNCC 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 786
RsaNI GTAC 1 cut(s) 785
RseI CAYNNNNRTG 3 cut(s) 201, 618, 653
SaqAI TTAA 1 cut(s) 671
SatI GCNGC 2 cut(s) 379, 561
Sau3AI GATC 1 cut(s) 423
SchI GAGTC 4 cut(s) 120, 125, 425, 754
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 2 cut(s) 564, 759
SfuI TTCGAA 1 cut(s) 63
SmiMI CAYNNNNRTG 3 cut(s) 201, 618, 653
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 6 cut(s) 26, 59, 456, 473, 695, 774
SsiI CCGC 2 cut(s) 241, 379
SspMI CTAG 3 cut(s) 435, 597, 690
TaaI ACNGT 2 cut(s) 168, 655
TaqI TCGA 2 cut(s) 63, 134
TasI AATT 6 cut(s) 26, 59, 456, 473, 695, 774
TatI WGTACW 1 cut(s) 784
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 671
Tru9I TTAA 1 cut(s) 671
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 333, 744
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 1 cut(s) 85
XapI RAATTY 2 cut(s) 59, 774
XceI RCATGY 3 cut(s) 213, 280, 623
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 3 cut(s) 435, 597, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.