FvH4_6g31280

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011335
Physical Location & Seq
Reverse (-)
24443030 .. 24448622
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31280.t3

Sequence Viewer

Length: 1074 bp
ATGAGTCGGAAGAACAGAACAGAAGAGCACAAGACAAGAAAGAGTGGAACTAGAATGGCAGAAGAGTCGGTAGAATCAGAGGCCGAGGAGGTGATGAGTGAAGTACACTTAGGCTGCCCACCTGGTTTCTCTGTCCCCCATCTTTCCCACTTCACCTTCTCCATCCCGCCTGGATTGATTGAGCCCAGAAGCTCCAATGAAGATTCCCAAGTTATAGAAGCAACCACTTGCTCCCAGCAGACCATAAGTTTTGACAAGGATGGCGATCTCATTCTTCCTAGACGAAAAACCAAATTGTCTAATTATAGCTATAGCTTGACCATCCAGCATAGTATCACATCAACACTACCAAGTGTTGGTTTGCAGGTGTGGAGAGCAGAACTTGTCTTGTCTGATTTTATATTGCATAAGATGTTCACATCATCCGAGCTTGATGGAGTTGTATCACTAGAACTTGGTGCTGGTACAGGGTTGGTGGGTATACTACTAGCGCGTGTTGCTAAAACAGTATTTATAACAGACCATGGGAATGAGATCCTTGACAACTCTTCTAAAAATATTGAGCTTAATTCTGAACTCATTGCTCGTGGAACTAAAGTCTATGTGCGTGAACTTGATTGGATGGATCCGTGGCCCCCAAGATTAAGCATAGAAGAATCCTCCGGTAAAACTAAAAGGTATTCTTGGACCTTATCAGAAATTGAAATAGCCCATGAAGCTTCTTTACTTGTAGCTGCGGATGTAATCTACAGTGAGGACTTAACAGATGCATTTTTCAGCACTTTAGAGAGATTAATGTCTCTCGGTTCCGAAAAGGTGTTATTCTTAGCTTTGGAAAAACGCTACAACTTTAGTCTTCATGATCTTGATGTTGTTGCAAATGGTTATTTACATTTCCGAAGTTATTTGCGGTCGGAAGAAGATTGTAAAGGCCATAAATGTGGTACAGAGCCTTGTTTTGTGGGCAAACGCATAGATATTACAGAGATTCCACAATATGTGAAAGAGTACGAAAGAGGAAGTGATGTCGAGATTTGGGAAATTAAGAGCAACTACAATGGAGTAGCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

358

Amino Acids

40.19

Weight (kDa)

5.27

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 117 - 218 7e-18 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 356
AccI GTMKAC 1 cut(s) 481
AccII CGCG 1 cut(s) 493
AciI CCGC 3 cut(s) 167, 737, 910
AclWI GGATC 3 cut(s) 529, 620, 633
AfaI GTAC 4 cut(s) 105, 466, 946, 1010
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 704
AjnI CCWGG 2 cut(s) 121, 169
AluBI AGCT 8 cut(s) 192, 309, 315, 430, 565, 719, 734, 830
AluI AGCT 8 cut(s) 192, 309, 315, 430, 565, 719, 734, 830
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 3 cut(s) 529, 620, 633
AoxI GGCC 3 cut(s) 81, 632, 931
ApeKI GCWGC 2 cut(s) 114, 734
AseI ATTAAT 1 cut(s) 794
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 633, 687
AsuHPI GGTGA 2 cut(s) 103, 145
AvaII GGWCC 1 cut(s) 687
BamHI GGATCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 101, 721
BccI CCATC 6 cut(s) 147, 170, 254, 329, 428, 616
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 2 cut(s) 123, 171
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 4 cut(s) 51, 279, 449, 488
BfmI CTRYAG 2 cut(s) 310, 748
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 2 cut(s) 115, 735
BlsI GCNGC 2 cut(s) 116, 736
Bme1390I CCNGG 2 cut(s) 123, 171
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 633, 687
BmiI GGNNCC 3 cut(s) 627, 635, 808
BmrFI CCNGG 2 cut(s) 123, 171
BmsI GCATC 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 848
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 84, 523, 629
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 2 cut(s) 123, 171
BseDI CCNNGG 3 cut(s) 84, 523, 629
BseGI GGATG 6 cut(s) 162, 265, 321, 422, 627, 745
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 101, 721
BseYI CCCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 493
Bsh1285I CGRYCG 1 cut(s) 914
BshFI GGCC 3 cut(s) 83, 634, 933
BsiEI CGRYCG 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 3 cut(s) 83, 634, 933
Bsp1286I GDGCHC 2 cut(s) 30, 186
Bsp143I GATC 4 cut(s) 265, 534, 625, 862
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 3 cut(s) 167, 737, 910
BspANI GGCC 3 cut(s) 83, 634, 933
BspFNI CGCG 1 cut(s) 493
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 627, 635, 808
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 3 cut(s) 529, 620, 633
BspQI GCTCTTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 579
BssECI CCNNGG 3 cut(s) 84, 523, 629
BssMI GATC 4 cut(s) 265, 534, 625, 862
BssNAI GTATAC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 2 cut(s) 123, 171
Bst4CI ACNGT 2 cut(s) 508, 752
Bst6I CTCTTC 3 cut(s) 18, 57, 553
BstDEI CTNAG 2 cut(s) 109, 826
BstDSI CCRYGG 2 cut(s) 523, 629
BstF5I GGATG 6 cut(s) 162, 265, 321, 422, 627, 745
BstFNI CGCG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 4 cut(s) 268, 537, 628, 865
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 4 cut(s) 265, 534, 625, 862
BstMCI CGRYCG 1 cut(s) 914
BstMWI GCNNNNNNNGC 2 cut(s) 497, 716
BstNI CCWGG 2 cut(s) 123, 171
BstSCI CCNGG 2 cut(s) 121, 169
BstSFI CTRYAG 2 cut(s) 310, 748
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 101, 721
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 2 cut(s) 534, 625
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 2 cut(s) 534, 625
BstZ17I GTATAC 1 cut(s) 482
BsuRI GGCC 3 cut(s) 83, 634, 933
BtgI CCRYGG 2 cut(s) 523, 629
BtsCI GGATG 6 cut(s) 162, 265, 321, 422, 627, 745
BtsIMutI CAGTG 1 cut(s) 757
BveI ACCTGC 1 cut(s) 355
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 633, 687
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 4 cut(s) 104, 465, 945, 1009
CviAII CATG 3 cut(s) 524, 713, 860
CviQI GTAC 4 cut(s) 104, 465, 945, 1009
DdeI CTNAG 2 cut(s) 109, 826
DpnI GATC 4 cut(s) 267, 536, 627, 864
DpnII GATC 4 cut(s) 265, 534, 625, 862
Eam1104I CTCTTC 3 cut(s) 18, 57, 553
EarI CTCTTC 3 cut(s) 18, 57, 553
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 687
EcoRII CCWGG 2 cut(s) 121, 169
EcoT14I CCWWGG 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 3 cut(s) 527, 716, 863
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 523, 712, 859
FauI CCCGC 1 cut(s) 174
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 115, 735
FokI GGATG 6 cut(s) 149, 272, 308, 409, 634, 752
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 115, 735
FspBI CTAG 4 cut(s) 51, 279, 449, 488
GlaI GCGC 1 cut(s) 492
GluI GCNGC 2 cut(s) 115, 735
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 3 cut(s) 83, 634, 933
HapII CCGG 1 cut(s) 663
HhaI GCGC 1 cut(s) 493
Hin1II CATG 3 cut(s) 527, 716, 863
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 6 cut(s) 4, 65, 74, 203, 656, 988
HpaII CCGG 1 cut(s) 663
HphI GGTGA 2 cut(s) 103, 145
Hpy166II GTNNAC 4 cut(s) 106, 417, 482, 611
Hpy188I TCNGA 9 cut(s) 9, 79, 394, 427, 574, 697, 811, 899, 916
Hpy188III TCNNGA 3 cut(s) 860, 866, 1030
Hpy8I GTNNAC 4 cut(s) 106, 417, 482, 611
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 508, 752
HpyCH4V TGCA 4 cut(s) 364, 406, 770, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 716
HpyF3I CTNAG 2 cut(s) 109, 826
Hsp92II CATG 3 cut(s) 527, 716, 863
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 4 cut(s) 265, 534, 625, 862
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 197, 236
Lsp1109I GCAGC 2 cut(s) 101, 721
LweI GCATC 1 cut(s) 757
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 4 cut(s) 51, 279, 449, 488
MalI GATC 4 cut(s) 267, 536, 627, 864
MboI GATC 4 cut(s) 265, 534, 625, 862
MflI RGATCY 2 cut(s) 534, 625
MhlI GDGCHC 2 cut(s) 30, 186
MluCI AATT 5 cut(s) 293, 301, 568, 699, 1041
MlyI GAGTC 2 cut(s) 13, 74
MmeI TCCRAC 1 cut(s) 894
MnlI CCTC 6 cut(s) 73, 79, 82, 670, 748, 1010
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 5 cut(s) 567, 644, 761, 794, 1044
MslI CAYNNNNRTG 2 cut(s) 528, 939
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 2 cut(s) 123, 171
MvaI CCWGG 2 cut(s) 123, 171
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 2 cut(s) 497, 716
NcoI CCATGG 1 cut(s) 523
NdeII GATC 4 cut(s) 265, 534, 625, 862
NlaIII CATG 3 cut(s) 527, 716, 863
NlaIV GGNNCC 3 cut(s) 627, 635, 808
NmeAIII GCCGAG 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 772
PagI TCATGA 1 cut(s) 859
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 74, 203, 656, 988
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 2 cut(s) 116, 736
PleI GAGTC 2 cut(s) 12, 73
PpsI GAGTC 2 cut(s) 12, 73
PshBI ATTAAT 1 cut(s) 794
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 121, 169
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 121, 169
PspN4I GGNNCC 3 cut(s) 627, 635, 808
PspPI GGNCC 2 cut(s) 633, 687
PsuI RGATCY 2 cut(s) 534, 625
RsaI GTAC 4 cut(s) 105, 466, 946, 1010
RsaNI GTAC 4 cut(s) 104, 465, 945, 1009
RseI CAYNNNNRTG 2 cut(s) 528, 939
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 5 cut(s) 567, 644, 761, 794, 1044
SatI GCNGC 2 cut(s) 115, 735
Sau3AI GATC 4 cut(s) 265, 534, 625, 862
Sau96I GGNCC 2 cut(s) 633, 687
SchI GAGTC 2 cut(s) 13, 74
ScrFI CCNGG 2 cut(s) 123, 171
SduI GDGCHC 2 cut(s) 30, 186
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 2 cut(s) 310, 748
SinI GGWCC 1 cut(s) 687
SmiMI CAYNNNNRTG 2 cut(s) 528, 939
Sse9I AATT 5 cut(s) 293, 301, 568, 699, 1041
SsiI CCGC 3 cut(s) 167, 737, 910
SspI AATATT 1 cut(s) 559
SspMI CTAG 4 cut(s) 51, 279, 449, 488
StyD4I CCNGG 2 cut(s) 121, 169
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 508, 752
TaqI TCGA 1 cut(s) 1029
TasI AATT 5 cut(s) 293, 301, 568, 699, 1041
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 4 cut(s) 74, 203, 656, 988
Tru1I TTAA 5 cut(s) 567, 644, 761, 794, 1044
Tru9I TTAA 5 cut(s) 567, 644, 761, 794, 1044
TscAI CASTG 1 cut(s) 757
TseI GCWGC 2 cut(s) 114, 734
TspDTI ATGAA 3 cut(s) 213, 729, 848
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 1 cut(s) 757
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 687
VspI ATTAAT 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 4 cut(s) 51, 279, 449, 488
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.