Rw2G032310

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011335
Physical Location & Seq
Reverse (-)
53245873 .. 53251689
5817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032310.1

Sequence Viewer

Length: 1041 bp
ATGGAAGAGTCAGTGGAGACAAGGGGGCAATCAGAGGTGGAGAAGGTGATGAGTGAAGTACACTTGGGGTGCCCACCTGGTTTCTCTGGCCCTCATATTTCCTACTTCACCTTCTCCATCCCACAACCTGGACCTGGATTGATTGAGCCCAGAAGCTCCAATGACGTTTCCCAAGTTGAAGAAGCAACTACTTCCATTTCCACACAGCAAAACATAAGTTTTGACGAGGATGGCGATCTCATTCTTCCTAGACGAAAAACCAAATTATCTAATCAAAGCTATAGCGTGACCATCCAGCATAGTATCACATCAACACTACCAAGTGTTGGTTTGCAGGTGTGGAGAGCAGAACTTGTCTTATCTGATTTTTTATTGCATAAGATGTTTACATCATCCGAGCTTGATGGAGTTGTATCACTAGAACTTGGTGCTGGTACAGGGTTGGTGGGTATACTACTAGCACGTGTTGCTAAAACAGTGTTTATAACAGACCATGGGAATGAGATCCTTGACAACTGTGCTAAAAATGTTGAGCTTAATCCTGAACTCATCAGTCCTGGAACTACAGTCTATGTACGTGAACTTGATTGGATGAATCCCTGGCCCCCAAGATTAACCATAGAAGAATCCTCCTTGGGTAAAACTAAAAGGTATTCTTGGACCTTTTCAGAAATTGAAATAGCCCATGAAGCTTCTTTGCTTGTAGCTGCAGATGTAATCTACAGTGATGACTTGACAGATGCATTTTTCAGCACTTTAGAGAGACTAATGTCTCTCGGTTCCGAAAAGGTCTTATTCTTAGCTTTGGAAAAACGCTACAACTTTAGTCTTCATGATCTTGATGTTGTTGCAAATGGTTATTTACATTTCCGCAGTTATTTGCAGTCGGGAGGGGATTGTGAAGGCCTGAAATGTGGTCCAATGCCTTGCTTTGTGGGCAAATGCATAGACATTACAGAGATTCCGCAATATTTGAAAGAGTATGTCAGAGGAAGTGATGTTGAAATTTGGGAAATTAAGTATAGCAAAAGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

346

Amino Acids

38.6

Weight (kDa)

4.87

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 105 - 205 2e-17 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 2 cut(s) 128, 326
AccI GTMKAC 1 cut(s) 451
AciI CCGC 2 cut(s) 871, 965
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 2 cut(s) 1005, 1034
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 3 cut(s) 60, 436, 576
AfiI CCNNNNNNNGG 3 cut(s) 128, 134, 326
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 4 cut(s) 179, 677, 976, 1004
AjnI CCWGG 5 cut(s) 76, 127, 133, 556, 599
AluBI AGCT 7 cut(s) 156, 279, 400, 535, 692, 707, 803
AluI AGCT 7 cut(s) 156, 279, 400, 535, 692, 707, 803
Alw26I GTCTC 3 cut(s) 11, 757, 777
AlwI GGATC 1 cut(s) 499
AoxI GGCC 3 cut(s) 88, 602, 904
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 2 cut(s) 1005, 1034
AspS9I GGNCC 5 cut(s) 89, 131, 603, 660, 917
AsuHPI GGTGA 2 cut(s) 58, 100
AvaII GGWCC 3 cut(s) 131, 660, 917
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 821
BbvI GCAGC 1 cut(s) 694
BccI CCATC 4 cut(s) 125, 224, 299, 398
BciT130I CCWGG 5 cut(s) 78, 129, 135, 558, 601
BcoDI GTCTC 3 cut(s) 11, 757, 777
BfaI CTAG 3 cut(s) 249, 419, 458
BfmI CTRYAG 4 cut(s) 280, 564, 708, 721
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 1 cut(s) 708
BlsI GCNGC 1 cut(s) 709
Bme1390I CCNGG 5 cut(s) 78, 129, 135, 558, 601
Bme18I GGWCC 3 cut(s) 131, 660, 917
BmgT120I GGNCC 5 cut(s) 89, 131, 603, 660, 917
BmiI GGNNCC 3 cut(s) 71, 605, 781
BmrFI CCNGG 5 cut(s) 78, 129, 135, 558, 601
BmsI GCATC 1 cut(s) 730
BoxI GACNNNNGTC 1 cut(s) 769
BpiI GAAGAC 1 cut(s) 821
BsaAI YACGTR 2 cut(s) 464, 578
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 493, 599, 633
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 134, 326
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 5 cut(s) 78, 129, 135, 558, 601
BseDI CCNNGG 3 cut(s) 493, 599, 633
BseGI GGATG 5 cut(s) 117, 235, 291, 392, 597
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 128, 134, 326
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 694
BshFI GGCC 3 cut(s) 90, 604, 906
BshNI GGYRCC 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 128, 134, 326
BsmAI GTCTC 3 cut(s) 11, 757, 777
BsnI GGCC 3 cut(s) 90, 604, 906
Bsp1286I GDGCHC 2 cut(s) 74, 150
Bsp143I GATC 3 cut(s) 235, 504, 835
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 2 cut(s) 871, 965
BspANI GGCC 3 cut(s) 90, 604, 906
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 71, 605, 781
BspMAI CTGCAG 1 cut(s) 712
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 69
BssECI CCNNGG 3 cut(s) 493, 599, 633
BssMI GATC 3 cut(s) 235, 504, 835
BssNAI GTATAC 1 cut(s) 452
BssT1I CCWWGG 2 cut(s) 493, 633
Bst1107I GTATAC 1 cut(s) 452
Bst2UI CCWGG 5 cut(s) 78, 129, 135, 558, 601
Bst4CI ACNGT 4 cut(s) 478, 518, 568, 725
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBAI YACGTR 2 cut(s) 464, 578
BstDEI CTNAG 1 cut(s) 799
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 5 cut(s) 117, 235, 291, 392, 597
BstKTI GATC 3 cut(s) 238, 507, 838
BstMAI GTCTC 3 cut(s) 11, 757, 777
BstMBI GATC 3 cut(s) 235, 504, 835
BstMWI GCNNNNNNNGC 3 cut(s) 467, 689, 936
BstNI CCWGG 5 cut(s) 78, 129, 135, 558, 601
BstPAI GACNNNNGTC 1 cut(s) 769
BstSCI CCNGG 5 cut(s) 76, 127, 133, 556, 599
BstSFI CTRYAG 4 cut(s) 280, 564, 708, 721
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
BstZ17I GTATAC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 90, 604, 906
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 5 cut(s) 117, 235, 291, 392, 597
BtsIMutI CAGTG 3 cut(s) 18, 483, 730
BveI ACCTGC 1 cut(s) 325
CciI TCATGA 1 cut(s) 832
Cfr13I GGNCC 5 cut(s) 89, 131, 603, 660, 917
CsiI ACCWGGT 1 cut(s) 76
Csp6I GTAC 3 cut(s) 59, 435, 575
CviAII CATG 3 cut(s) 494, 686, 833
CviQI GTAC 3 cut(s) 59, 435, 575
DdeI CTNAG 1 cut(s) 799
DpnI GATC 3 cut(s) 237, 506, 837
DpnII GATC 3 cut(s) 235, 504, 835
Eco130I CCWWGG 2 cut(s) 493, 633
Eco147I AGGCCT 1 cut(s) 906
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 131, 660, 917
Eco72I CACGTG 1 cut(s) 464
EcoRII CCWGG 5 cut(s) 76, 127, 133, 556, 599
EcoT14I CCWWGG 2 cut(s) 493, 633
EcoT22I ATGCAT 2 cut(s) 745, 947
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 493, 633
FaeI CATG 3 cut(s) 497, 689, 836
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FatI CATG 3 cut(s) 493, 685, 832
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 1 cut(s) 708
FokI GGATG 5 cut(s) 104, 242, 278, 379, 604
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 708
FspBI CTAG 3 cut(s) 249, 419, 458
GluI GCNGC 1 cut(s) 708
HaeIII GGCC 3 cut(s) 90, 604, 906
Hin1II CATG 3 cut(s) 497, 689, 836
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 4 cut(s) 8, 595, 626, 961
HphI GGTGA 2 cut(s) 58, 100
Hpy166II GTNNAC 4 cut(s) 61, 387, 452, 581
Hpy188I TCNGA 6 cut(s) 34, 364, 397, 670, 784, 989
Hpy188III TCNNGA 4 cut(s) 542, 833, 839, 888
Hpy8I GTNNAC 4 cut(s) 61, 387, 452, 581
HpyAV CCTTC 3 cut(s) 37, 121, 896
HpyCH4III ACNGT 4 cut(s) 478, 518, 568, 725
HpyCH4IV ACGT 3 cut(s) 165, 463, 577
HpyCH4V TGCA 7 cut(s) 334, 376, 710, 743, 851, 883, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 689, 936
HpyF3I CTNAG 1 cut(s) 799
HpySE526I ACGT 3 cut(s) 165, 463, 577
Hsp92II CATG 3 cut(s) 497, 689, 836
Kzo9I GATC 3 cut(s) 235, 504, 835
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 694
LweI GCATC 1 cut(s) 730
MabI ACCWGGT 1 cut(s) 76
MaeI CTAG 3 cut(s) 249, 419, 458
MaeII ACGT 3 cut(s) 165, 463, 577
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 237, 506, 837
MboI GATC 3 cut(s) 235, 504, 835
MboII GAAGA 5 cut(s) 17, 191, 236, 635, 821
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 74, 150
MluCI AATT 5 cut(s) 263, 672, 1005, 1014, 1034
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 6 cut(s) 28, 102, 220, 640, 884, 983
Mph1103I ATGCAT 2 cut(s) 745, 947
MseI TTAA 3 cut(s) 537, 614, 1017
MslI CAYNNNNRTG 1 cut(s) 498
MspR9I CCNGG 5 cut(s) 78, 129, 135, 558, 601
MvaI CCWGG 5 cut(s) 78, 129, 135, 558, 601
MwoI GCNNNNNNNGC 3 cut(s) 467, 689, 936
NcoI CCATGG 1 cut(s) 493
NdeII GATC 3 cut(s) 235, 504, 835
NlaIII CATG 3 cut(s) 497, 689, 836
NlaIV GGNNCC 3 cut(s) 71, 605, 781
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 2 cut(s) 745, 947
PagI TCATGA 1 cut(s) 832
PaqCI CACCTGC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 3 cut(s) 595, 626, 961
PflMI CCANNNNNTGG 2 cut(s) 128, 326
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 1 cut(s) 709
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 2 cut(s) 464, 578
PshAI GACNNNNGTC 1 cut(s) 769
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 5 cut(s) 76, 127, 133, 556, 599
PspCI CACGTG 1 cut(s) 464
PspGI CCWGG 5 cut(s) 76, 127, 133, 556, 599
PspN4I GGNNCC 3 cut(s) 71, 605, 781
PspPI GGNCC 5 cut(s) 89, 131, 603, 660, 917
PstI CTGCAG 1 cut(s) 712
PsuI RGATCY 1 cut(s) 504
RsaI GTAC 3 cut(s) 60, 436, 576
RsaNI GTAC 3 cut(s) 59, 435, 575
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 537, 614, 1017
SatI GCNGC 1 cut(s) 708
Sau3AI GATC 3 cut(s) 235, 504, 835
Sau96I GGNCC 5 cut(s) 89, 131, 603, 660, 917
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 5 cut(s) 78, 129, 135, 558, 601
SduI GDGCHC 2 cut(s) 74, 150
SexAI ACCWGGT 1 cut(s) 76
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 4 cut(s) 280, 564, 708, 721
SinI GGWCC 3 cut(s) 131, 660, 917
SmiMI CAYNNNNRTG 1 cut(s) 498
Sse9I AATT 5 cut(s) 263, 672, 1005, 1014, 1034
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 2 cut(s) 871, 965
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 249, 419, 458
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 5 cut(s) 76, 127, 133, 556, 599
StyI CCWWGG 2 cut(s) 493, 633
TaaI ACNGT 4 cut(s) 478, 518, 568, 725
TaiI ACGT 3 cut(s) 168, 466, 580
TasI AATT 5 cut(s) 263, 672, 1005, 1014, 1034
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 3 cut(s) 595, 626, 961
Tru1I TTAA 3 cut(s) 537, 614, 1017
Tru9I TTAA 3 cut(s) 537, 614, 1017
TscAI CASTG 3 cut(s) 18, 483, 730
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 608, 702, 821
TspRI CASTG 3 cut(s) 18, 483, 730
Van91I CCANNNNNTGG 2 cut(s) 128, 326
VpaK11BI GGWCC 3 cut(s) 131, 660, 917
XapI RAATTY 2 cut(s) 1005, 1034
XmiI GTMKAC 1 cut(s) 451
XspI CTAG 3 cut(s) 249, 419, 458
Zsp2I ATGCAT 2 cut(s) 745, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.