RchiOBHm_Chr2g0138011

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011335
Physical Location & Seq
Reverse (-)
55815723 .. 55821580
5858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50872

Sequence Viewer

Length: 1044 bp
ATGGAAGAAGAGTCAGTGGAGACAAGGGGGCAATCAGAGGTGGAGAAGGTGATGAGTGAAGTACACTTGGGGTGCCCACCTGGTTTCTCTGGCCCTCATATTTCCTACTTCACCTTCTCCATCCCACAACCTGGACCTGGATTGATTGAGCCCAGAAGCTCCAATGACGTTTCCCAAGTTGAAGAAGCAACTACTTCCATTTCCACACAGCAAAACATAAGTTTTGACGAGGATGGCGATCTCATTCTTCCTAGACGAAAAACCAAATTATCTAATCAAAGCTATAGCGTGACCATCCAGCATAGTATCACATCAACACTACCAAGTGTTGGTTTGCAGGTGTGGAGAGCAGAACTTGTCTTATCTGATTTTTTATTGCATAAGATGTTTACATCATCCGAGCTTGATGGAGTTGTATCACTAGAACTTGGTGCTGGTACAGGGTTGGTGGGTATACTACTAGCACGTGTTGCTAAAACAGTGTTTATAACAGACCAAGGGAATGAGATTCTTGACAACTGTGCTAAAAATGTTGAGCTTAATCCTGAACTCATCAGTCCTGGAACTACAGTCTATGTACGTGAACTTGATTGGATGAATCCCTGGCCCCCAAGATTAACCATAGAAGAATCCTCCTTGGGTAAAACTAAAAGGTATTCTTGGACCTTTTCAGAAATTGAAATAGCCCATGAAGCTTCTTTGCTTGTAGCTGCAGATGTAATCTACAGTGATGACTTGACAGATGCATTTTTCAGCACTTTAGAGAGACTAATGTCTCTCGGTTCCGAAAAGGTCTTATTCTTAGCTTTGGAAAAACGCTACAACTTTAGTCTTCATGATCTTGATGTTGTTGCAAATGGTTATTTACATTTCCGCAGTTATTTGCAGTCGGGAGGGGATTGTGAAGGCCTGAAATGTGGTCCAATGCCTTGCTTTGTGGGCAAATGCATAGACATTACAGAGATTCCGCAATATTTGAAAGAGTATGTCAGAGGAAGTGATGTTGAAATTTGGGAAATTAAGTATAGCAAAAGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

347

Amino Acids

38.72

Weight (kDa)

4.8

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 106 - 206 1.1e-17 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 2 cut(s) 131, 329
AccI GTMKAC 1 cut(s) 454
AciI CCGC 2 cut(s) 874, 968
AcsI RAATTY 2 cut(s) 1008, 1037
AcvI CACGTG 1 cut(s) 467
AfaI GTAC 3 cut(s) 63, 439, 579
AfiI CCNNNNNNNGG 3 cut(s) 131, 137, 329
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 4 cut(s) 182, 680, 979, 1007
AjnI CCWGG 5 cut(s) 79, 130, 136, 559, 602
AluBI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
AluI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
Alw26I GTCTC 3 cut(s) 14, 760, 780
AoxI GGCC 3 cut(s) 91, 605, 907
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 1008, 1037
AspS9I GGNCC 5 cut(s) 92, 134, 606, 663, 920
AsuHPI GGTGA 2 cut(s) 61, 103
AvaII GGWCC 3 cut(s) 134, 663, 920
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 153
BbrPI CACGTG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 824
BbvI GCAGC 1 cut(s) 697
BccI CCATC 4 cut(s) 128, 227, 302, 401
BciT130I CCWGG 5 cut(s) 81, 132, 138, 561, 604
BcoDI GTCTC 3 cut(s) 14, 760, 780
BfaI CTAG 3 cut(s) 252, 422, 461
BfmI CTRYAG 4 cut(s) 283, 567, 711, 724
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
Bme1390I CCNGG 5 cut(s) 81, 132, 138, 561, 604
Bme18I GGWCC 3 cut(s) 134, 663, 920
BmgT120I GGNCC 5 cut(s) 92, 134, 606, 663, 920
BmiI GGNNCC 3 cut(s) 74, 608, 784
BmrFI CCNGG 5 cut(s) 81, 132, 138, 561, 604
BmsI GCATC 1 cut(s) 733
BoxI GACNNNNGTC 1 cut(s) 772
BpiI GAAGAC 1 cut(s) 824
BsaAI YACGTR 2 cut(s) 467, 581
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 496, 602, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 137, 329
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 5 cut(s) 81, 132, 138, 561, 604
BseDI CCNNGG 3 cut(s) 496, 602, 636
BseGI GGATG 5 cut(s) 120, 238, 294, 395, 600
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 131, 137, 329
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 697
BshFI GGCC 3 cut(s) 93, 607, 909
BshNI GGYRCC 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 131, 137, 329
BsmAI GTCTC 3 cut(s) 14, 760, 780
BsnI GGCC 3 cut(s) 93, 607, 909
Bsp1286I GDGCHC 2 cut(s) 77, 153
Bsp143I GATC 2 cut(s) 238, 838
BspACI CCGC 2 cut(s) 874, 968
BspANI GGCC 3 cut(s) 93, 607, 909
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 3 cut(s) 74, 608, 784
BspMAI CTGCAG 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 496, 602, 636
BssMI GATC 2 cut(s) 238, 838
BssNAI GTATAC 1 cut(s) 455
BssT1I CCWWGG 2 cut(s) 496, 636
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 5 cut(s) 81, 132, 138, 561, 604
Bst4CI ACNGT 4 cut(s) 481, 521, 571, 728
Bst6I CTCTTC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBAI YACGTR 2 cut(s) 467, 581
BstDEI CTNAG 1 cut(s) 802
BstF5I GGATG 5 cut(s) 120, 238, 294, 395, 600
BstKTI GATC 2 cut(s) 241, 841
BstMAI GTCTC 3 cut(s) 14, 760, 780
BstMBI GATC 2 cut(s) 238, 838
BstMWI GCNNNNNNNGC 3 cut(s) 470, 692, 939
BstNI CCWGG 5 cut(s) 81, 132, 138, 561, 604
BstPAI GACNNNNGTC 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 79, 130, 136, 559, 602
BstSFI CTRYAG 4 cut(s) 283, 567, 711, 724
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 824
BstZ17I GTATAC 1 cut(s) 455
BsuRI GGCC 3 cut(s) 93, 607, 909
BtsCI GGATG 5 cut(s) 120, 238, 294, 395, 600
BtsIMutI CAGTG 3 cut(s) 21, 486, 733
BveI ACCTGC 1 cut(s) 328
CciI TCATGA 1 cut(s) 835
Cfr13I GGNCC 5 cut(s) 92, 134, 606, 663, 920
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 3 cut(s) 62, 438, 578
CviAII CATG 2 cut(s) 689, 836
CviQI GTAC 3 cut(s) 62, 438, 578
DdeI CTNAG 1 cut(s) 802
DpnI GATC 2 cut(s) 240, 840
DpnII GATC 2 cut(s) 238, 838
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 496, 636
Eco147I AGGCCT 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 134, 663, 920
Eco72I CACGTG 1 cut(s) 467
EcoRII CCWGG 5 cut(s) 79, 130, 136, 559, 602
EcoT14I CCWWGG 2 cut(s) 496, 636
EcoT22I ATGCAT 2 cut(s) 748, 950
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 496, 636
FaeI CATG 2 cut(s) 692, 839
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FatI CATG 2 cut(s) 688, 835
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 5 cut(s) 107, 245, 281, 382, 607
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 711
FspBI CTAG 3 cut(s) 252, 422, 461
GluI GCNGC 1 cut(s) 711
HaeIII GGCC 3 cut(s) 93, 607, 909
Hin1II CATG 2 cut(s) 692, 839
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 5 cut(s) 11, 508, 598, 629, 964
HphI GGTGA 2 cut(s) 61, 103
Hpy166II GTNNAC 4 cut(s) 64, 390, 455, 584
Hpy188I TCNGA 6 cut(s) 37, 367, 400, 673, 787, 992
Hpy188III TCNNGA 5 cut(s) 512, 545, 836, 842, 891
Hpy8I GTNNAC 4 cut(s) 64, 390, 455, 584
HpyAV CCTTC 3 cut(s) 40, 124, 899
HpyCH4III ACNGT 4 cut(s) 481, 521, 571, 728
HpyCH4IV ACGT 3 cut(s) 168, 466, 580
HpyCH4V TGCA 7 cut(s) 337, 379, 713, 746, 854, 886, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 692, 939
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 3 cut(s) 168, 466, 580
Hsp92II CATG 2 cut(s) 692, 839
Kzo9I GATC 2 cut(s) 238, 838
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 1 cut(s) 733
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 3 cut(s) 252, 422, 461
MaeII ACGT 3 cut(s) 168, 466, 580
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 240, 840
MboI GATC 2 cut(s) 238, 838
MboII GAAGA 6 cut(s) 17, 20, 194, 239, 638, 824
MhlI GDGCHC 2 cut(s) 77, 153
MluCI AATT 5 cut(s) 266, 675, 1008, 1017, 1037
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 6 cut(s) 31, 105, 223, 643, 887, 986
Mph1103I ATGCAT 2 cut(s) 748, 950
MseI TTAA 3 cut(s) 540, 617, 1020
MspR9I CCNGG 5 cut(s) 81, 132, 138, 561, 604
MvaI CCWGG 5 cut(s) 81, 132, 138, 561, 604
MwoI GCNNNNNNNGC 3 cut(s) 470, 692, 939
NdeII GATC 2 cut(s) 238, 838
NlaIII CATG 2 cut(s) 692, 839
NlaIV GGNNCC 3 cut(s) 74, 608, 784
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 2 cut(s) 748, 950
PagI TCATGA 1 cut(s) 835
PaqCI CACCTGC 1 cut(s) 328
PceI AGGCCT 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 4 cut(s) 508, 598, 629, 964
PflMI CCANNNNNTGG 2 cut(s) 131, 329
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 1 cut(s) 712
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 2 cut(s) 467, 581
PshAI GACNNNNGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 5 cut(s) 79, 130, 136, 559, 602
PspCI CACGTG 1 cut(s) 467
PspGI CCWGG 5 cut(s) 79, 130, 136, 559, 602
PspN4I GGNNCC 3 cut(s) 74, 608, 784
PspPI GGNCC 5 cut(s) 92, 134, 606, 663, 920
PstI CTGCAG 1 cut(s) 715
RsaI GTAC 3 cut(s) 63, 439, 579
RsaNI GTAC 3 cut(s) 62, 438, 578
SaqAI TTAA 3 cut(s) 540, 617, 1020
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 2 cut(s) 238, 838
Sau96I GGNCC 5 cut(s) 92, 134, 606, 663, 920
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 5 cut(s) 81, 132, 138, 561, 604
SduI GDGCHC 2 cut(s) 77, 153
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 4 cut(s) 283, 567, 711, 724
SinI GGWCC 3 cut(s) 134, 663, 920
Sse9I AATT 5 cut(s) 266, 675, 1008, 1017, 1037
SseBI AGGCCT 1 cut(s) 909
SsiI CCGC 2 cut(s) 874, 968
SspI AATATT 1 cut(s) 974
SspMI CTAG 3 cut(s) 252, 422, 461
StuI AGGCCT 1 cut(s) 909
StyD4I CCNGG 5 cut(s) 79, 130, 136, 559, 602
StyI CCWWGG 2 cut(s) 496, 636
TaaI ACNGT 4 cut(s) 481, 521, 571, 728
TaiI ACGT 3 cut(s) 171, 469, 583
TasI AATT 5 cut(s) 266, 675, 1008, 1017, 1037
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 4 cut(s) 508, 598, 629, 964
Tru1I TTAA 3 cut(s) 540, 617, 1020
Tru9I TTAA 3 cut(s) 540, 617, 1020
TscAI CASTG 3 cut(s) 21, 486, 733
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 611, 705, 824
TspRI CASTG 3 cut(s) 21, 486, 733
Van91I CCANNNNNTGG 2 cut(s) 131, 329
VpaK11BI GGWCC 3 cut(s) 134, 663, 920
XapI RAATTY 2 cut(s) 1008, 1037
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 3 cut(s) 252, 422, 461
Zsp2I ATGCAT 2 cut(s) 748, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.