Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Forward (+)

43773915 .. 43777900

Gene Structure 3986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATGGTTTTGCAGTACTGGTAGTGCTGGTAGTGGTTTCTGTTGTGCAGCAACAAGTGCATGGGATTGGGGGATGTGATGTTTCTCGTGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTGAGAAGGAGTTTGACTGTATAAAGAATGGTCGCCCAGACAAGGACTATCTCAAATACAGATGGCAGCCTCTTGGCTGCAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGAGGGAAGAGCATCATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCGCTTGCTTGCTTCATACGGCTGTTCCAAATGCAAAATACACATTGGTTAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATGTTAAGGTGTTGTTCTCCCGCAACGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGCGAGTCCTAAAACTTGACTCAATCTCGCTTGAAAACCAGAAACTGTGGACAGGAGTTGACGTCATGATCTTCAACACATGGCATTGGTGGCTTCACACTGGAAGAAAGCAAGCATGGGATCTTATTGAAAAAGGGGGGAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCATATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACACCCATGTGGACCCTGCAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGATGATCCAAAAGCAGGAAGCTGCAATGGGCAAACAGAACCACTTCGAGGTCCAAGCTATCCTCATGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGTCAAAGCCCGTCCAATTGCTTGATGTCACACATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

350

Amino Acids

39.18

Weight (kDa)

8.06

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	25 - 77	1.8e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	78 - 345	2.7e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	690
AccII	CGCG	1 cut(s)	873
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	2 cut(s)	396, 439
AclWI	GGATC	2 cut(s)	606, 767
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	2 cut(s)	18, 837
AfiI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
AgsI	TTSAA	4 cut(s)	244, 512, 553, 608
AjnI	CCWGG	1 cut(s)	729
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	6 cut(s)	131, 138, 789, 825, 998, 1037
AluI	AGCT	6 cut(s)	131, 138, 789, 825, 998, 1037
AlwI	GGATC	2 cut(s)	606, 767
AlwNI	CAGNNNCTG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	1 cut(s)	952
ApeKI	GCWGC	7 cut(s)	49, 138, 214, 225, 789, 981, 1034
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	875
AspS9I	GGNCC	2 cut(s)	703, 818
AvaII	GGWCC	2 cut(s)	703, 818
BaeGI	GKGCMC	2 cut(s)	939, 966
BanI	GGYRCC	1 cut(s)	936
BauI	CACGAG	2 cut(s)	87, 452
BbsI	GAAGAC	1 cut(s)	715
BbvI	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BccI	CCATC	2 cut(s)	204, 926
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	731
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	979
BisI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
BlsI	GCNGC	7 cut(s)	51, 140, 216, 227, 791, 983, 1036
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	2 cut(s)	703, 818
BmgT120I	GGNCC	2 cut(s)	703, 818
BmiI	GGNNCC	2 cut(s)	705, 938
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	1 cut(s)	715
BpmI	CTGGAG	2 cut(s)	405, 1020
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	717, 730, 955, 972
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 782, 815
Bse1I	ACTGG	3 cut(s)	24, 583, 770
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	4 cut(s)	717, 730, 955, 972
BseGI	GGATG	4 cut(s)	10, 80, 775, 838
BseLI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
BseMI	GCAATG	1 cut(s)	799
BseNI	ACTGG	3 cut(s)	24, 583, 770
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	2 cut(s)	939, 966
BseXI	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	954
BshNI	GGYRCC	1 cut(s)	936
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	954
Bsp1286I	GDGCHC	2 cut(s)	939, 966
Bsp13I	TCCGGA	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	253, 546, 598, 745, 772
BspACI	CCGC	2 cut(s)	396, 439
BspANI	GGCC	1 cut(s)	954
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	873
BspHI	TCATGA	2 cut(s)	103, 543
BspLI	GGNNCC	2 cut(s)	705, 938
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	2 cut(s)	606, 767
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	799
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	3 cut(s)	24, 583, 770
BssECI	CCNNGG	4 cut(s)	717, 730, 955, 972
BssMI	GATC	5 cut(s)	253, 546, 598, 745, 772
BssNI	GRCGYC	1 cut(s)	540
BssSI	CACGAG	2 cut(s)	87, 452
BssT1I	CCWWGG	2 cut(s)	717, 955
Bst2BI	CACGAG	2 cut(s)	87, 452
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	167, 525
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	58, 1040
BstAUI	TGTACA	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	334, 338, 591
BstDEI	CTNAG	2 cut(s)	269, 923
BstF5I	GGATG	4 cut(s)	10, 80, 775, 838
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	875
BstKTI	GATC	5 cut(s)	256, 549, 601, 748, 775
BstMBI	GATC	5 cut(s)	253, 546, 598, 745, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	979
BstSLI	GKGCMC	2 cut(s)	939, 966
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	954
BtsCI	GGATG	4 cut(s)	10, 80, 775, 838
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	3 cut(s)	334, 338, 591
CaiI	CAGNNNCTG	1 cut(s)	523
CciI	TCATGA	2 cut(s)	103, 543
CfoI	GCGC	1 cut(s)	875
Cfr13I	GGNCC	2 cut(s)	703, 818
Csp6I	GTAC	2 cut(s)	17, 836
CviQI	GTAC	2 cut(s)	17, 836
DdeI	CTNAG	2 cut(s)	269, 923
DpnI	GATC	5 cut(s)	255, 548, 600, 747, 774
DpnII	GATC	5 cut(s)	253, 546, 598, 745, 772
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	717, 955
Eco47I	GGWCC	2 cut(s)	703, 818
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	717, 955
ErhI	CCWWGG	2 cut(s)	717, 955
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	1 cut(s)	311
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
FokI	GGATG	4 cut(s)	17, 87, 782, 825
Fsp4HI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	874
GluI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	2 cut(s)	405, 1020
HaeIII	GGCC	1 cut(s)	954
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	1 cut(s)	875
Hin1I	GRCGYC	1 cut(s)	540
Hin6I	GCGC	1 cut(s)	873
HinP1I	GCGC	1 cut(s)	873
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	7 cut(s)	110, 240, 299, 307, 390, 483, 497
HpaII	CCGG	1 cut(s)	410
Hpy166II	GTNNAC	5 cut(s)	457, 528, 538, 691, 703
Hpy188I	TCNGA	3 cut(s)	312, 763, 976
Hpy188III	TCNNGA	5 cut(s)	104, 384, 410, 544, 1007
Hpy8I	GTNNAC	5 cut(s)	457, 528, 538, 691, 703
HpyAV	CCTTC	4 cut(s)	148, 154, 625, 655
HpyCH4III	ACNGT	2 cut(s)	167, 525
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
HpyF3I	CTNAG	2 cut(s)	269, 923
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	540
HspAI	GCGC	1 cut(s)	873
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	253, 546, 598, 745, 772
LguI	GCTCTTC	1 cut(s)	272
Lsp1109I	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	5 cut(s)	255, 548, 600, 747, 774
MboI	GATC	5 cut(s)	253, 546, 598, 745, 772
MboII	GAAGA	6 cut(s)	289, 541, 594, 715, 718, 1016
MfeI	CAATTG	1 cut(s)	893
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	939, 966
MluCI	AATT	5 cut(s)	94, 249, 624, 754, 893
MlyI	GAGTC	5 cut(s)	293, 316, 384, 491, 492
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	2 cut(s)	423, 1051
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	893
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	5 cut(s)	253, 546, 598, 745, 772
NlaIV	GGNNCC	2 cut(s)	705, 938
NmuCI	GTSAC	1 cut(s)	904
OliI	CACNNNNGTG	1 cut(s)	698
PagI	TCATGA	2 cut(s)	103, 543
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	110, 240
PkrI	GCNGC	7 cut(s)	51, 140, 216, 227, 791, 983, 1036
PleI	GAGTC	5 cut(s)	293, 315, 384, 491, 491
PpsI	GAGTC	5 cut(s)	293, 315, 384, 491, 491
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	705, 938
PspPI	GGNCC	2 cut(s)	703, 818
PstI	CTGCAG	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	2 cut(s)	18, 837
RsaNI	GTAC	2 cut(s)	17, 836
RseI	CAYNNNNRTG	1 cut(s)	698
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	423, 1051
SatI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
Sau3AI	GATC	5 cut(s)	253, 546, 598, 745, 772
Sau96I	GGNCC	2 cut(s)	703, 818
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	5 cut(s)	293, 316, 384, 491, 492
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	2 cut(s)	939, 966
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	979
SinI	GGWCC	2 cut(s)	703, 818
SmiMI	CAYNNNNRTG	1 cut(s)	698
Sse9I	AATT	5 cut(s)	94, 249, 624, 754, 893
SsiI	CCGC	2 cut(s)	396, 439
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	717, 955
TaaI	ACNGT	2 cut(s)	167, 525
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	814
TasI	AATT	5 cut(s)	94, 249, 624, 754, 893
TatI	WGTACW	2 cut(s)	16, 835
TfiI	GAWTC	2 cut(s)	110, 240
Tru1I	TTAA	2 cut(s)	423, 1051
Tru9I	TTAA	2 cut(s)	423, 1051
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	7 cut(s)	49, 138, 214, 225, 789, 981, 1034
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	6 cut(s)	92, 102, 136, 141, 332, 747
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	703, 818
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	541
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.