Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Reverse (-)

60621246 .. 60625337

Gene Structure 4092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG417600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACATTTGTGCAGGGGCAGCCTACGTATGGGTCTCCGTGTGATAGTGATGATGATATGTACAGATCACAGAAGAAGGATAACGCTCTTCCGAAGAGAAAAAATAAGGGTGATGGAGACAAACGGAGCTATGTAACTGATGATACTGCATCAGTAGGAAGTGATGATGAAGCAACAGATATGTCCCATGATGACCGAATGACTGCTTCAAGTTCAGTAGGAAGTAGATCCGAGGATGAAGCAGAAAACAAGGTGCCCTCTTCCTATAAGTTCACTGCACCCCCTTACTACAAACCAAAGCCTCAGAAAAAAGAAAGTGTCTTTGAGGAACCCAGGAAGGTGAATGGTCATGCTGAACGAAGGTCAGTTAGGAGAACCTCGAAACCACCAGCAGGTGGTGACAATCATGGAAGTGATCCGAGGGATGAAGAAGAGAGGGTAATGGATGGGCTTTTGATGCATTACAGTCATAAACAGTCACCCTATGACGCAAGCAAGATGAAGGGAAATCTAAAACCTTGCTACAACCAGTCAGATGAAAATACTAATGAATCCACAAGGCACAGAAGCAGCAGGTCTGAAAGAGCAGCATCTCTGCCACCACCAGAGCAATCAACTTCACCTGAGCCAACAAAAAGGCATGCTCGAGGCAATTCCTTACAACCAGATGCCCATGTGCACCCGAACCTACCGGAGTATGATGAATTGGCAGCCCGAATTGCAGCTCTTAGAGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

246

Amino Acids

27.45

Weight (kDa)

6.52

Isoelectric Point (pI)

77.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	2 cut(s)	383, 564
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	395
AclWI	GGATC	2 cut(s)	222, 410
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	29, 392, 395
AgsI	TTSAA	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	129, 725
AluI	AGCT	2 cut(s)	129, 725
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	39, 111
Alw44I	GTGCAC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	222, 410
Ama87I	CYCGRG	1 cut(s)	645
ApaLI	GTGCAC	1 cut(s)	677
ApeKI	GCWGC	5 cut(s)	19, 570, 587, 710, 722
AsuHPI	GGTGA	5 cut(s)	122, 352, 410, 471, 612
AvaI	CYCGRG	1 cut(s)	645
BaeGI	GKGCMC	2 cut(s)	258, 681
BanI	GGYRCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	5 cut(s)	31, 582, 599, 722, 734
BccI	CCATC	2 cut(s)	107, 440
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	39, 111
BfuAI	ACCTGC	2 cut(s)	383, 564
BisI	GCNGC	5 cut(s)	20, 571, 588, 711, 723
BlsI	GCNGC	5 cut(s)	21, 572, 589, 712, 724
Bme1390I	CCNGG	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	255, 330
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	4 cut(s)	158, 447, 599, 658
Bpu10I	CCTNAGC	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	231, 332, 419
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 392, 395
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	231, 332, 419
BseGI	GGATG	3 cut(s)	241, 430, 451
BseLI	CCNNNNNNNGG	3 cut(s)	29, 392, 395
BseMII	CTCAG	2 cut(s)	317, 615
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	2 cut(s)	258, 681
BseXI	GCAGC	5 cut(s)	31, 582, 599, 722, 734
BsgI	GTGCAG	2 cut(s)	32, 261
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	645
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	29, 392, 395
BsmAI	GTCTC	2 cut(s)	39, 111
BsmFI	GGGAC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	258, 681
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	65, 227, 415
BspCNI	CTCAG	2 cut(s)	316, 616
BspLI	GGNNCC	2 cut(s)	255, 330
BspMI	ACCTGC	2 cut(s)	383, 564
BspPI	GGATC	2 cut(s)	222, 410
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	3 cut(s)	231, 332, 419
BssMI	GATC	3 cut(s)	65, 227, 415
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	467, 477
Bst6I	CTCTTC	4 cut(s)	89, 93, 265, 426
BstAUI	TGTACA	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	493, 642
BstDEI	CTNAG	3 cut(s)	303, 624, 728
BstF5I	GGATG	3 cut(s)	241, 430, 451
BstKTI	GATC	3 cut(s)	68, 230, 418
BstMAI	GTCTC	2 cut(s)	39, 111
BstMBI	GATC	3 cut(s)	65, 227, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 457, 719
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	332
BstSLI	GKGCMC	2 cut(s)	258, 681
BstSNI	TACGTA	1 cut(s)	27
BstV1I	GCAGC	5 cut(s)	31, 582, 599, 722, 734
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	241, 430, 451
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	2 cut(s)	383, 564
Cac8I	GCNNGC	2 cut(s)	493, 642
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	6 cut(s)	188, 350, 407, 641, 674, 738
CviJI	RGCY	7 cut(s)	22, 129, 301, 451, 628, 713, 725
CviKI_1	RGCY	7 cut(s)	22, 129, 301, 451, 628, 713, 725
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	303, 624, 728
DpnI	GATC	3 cut(s)	67, 229, 417
DpnII	GATC	3 cut(s)	65, 227, 415
Eam1104I	CTCTTC	4 cut(s)	89, 93, 265, 426
EarI	CTCTTC	4 cut(s)	89, 93, 265, 426
Eco105I	TACGTA	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	462
FaeI	CATG	6 cut(s)	191, 353, 410, 644, 677, 741
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	6 cut(s)	187, 349, 406, 640, 673, 737
Fnu4HI	GCNGC	5 cut(s)	20, 571, 588, 711, 723
FokI	GGATG	3 cut(s)	248, 437, 458
Fsp4HI	GCNGC	5 cut(s)	20, 571, 588, 711, 723
GluI	GCNGC	5 cut(s)	20, 571, 588, 711, 723
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	6 cut(s)	191, 353, 410, 644, 677, 741
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	5 cut(s)	122, 352, 410, 471, 612
Hpy166II	GTNNAC	2 cut(s)	273, 679
Hpy188I	TCNGA	6 cut(s)	93, 232, 306, 420, 535, 580
Hpy8I	GTNNAC	2 cut(s)	273, 679
HpyAV	CCTTC	4 cut(s)	70, 331, 354, 496
HpyCH4III	ACNGT	2 cut(s)	467, 477
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	13, 149, 278, 460, 679, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 457, 719
HpyF3I	CTNAG	3 cut(s)	303, 624, 728
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	191, 353, 410, 644, 677, 741
Kzo9I	GATC	3 cut(s)	65, 227, 415
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	5 cut(s)	31, 582, 599, 722, 734
LweI	GCATC	4 cut(s)	158, 447, 599, 658
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	3 cut(s)	133, 398, 477
MalI	GATC	3 cut(s)	67, 229, 417
MboI	GATC	3 cut(s)	65, 227, 415
MboII	GAAGA	6 cut(s)	80, 85, 106, 252, 440, 443
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	258, 681
MluCI	AATT	3 cut(s)	652, 704, 717
MnlI	CCTC	9 cut(s)	226, 268, 312, 319, 388, 414, 429, 641, 725
Mph1103I	ATGCAT	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	19, 457, 719
NdeII	GATC	3 cut(s)	65, 227, 415
NlaIII	CATG	6 cut(s)	191, 353, 410, 644, 677, 741
NlaIV	GGNNCC	2 cut(s)	255, 330
NmuCI	GTSAC	2 cut(s)	398, 477
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	645
PaqCI	CACCTGC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	551
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	5 cut(s)	21, 572, 589, 712, 724
Ppu21I	YACGTR	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	255, 330
PspXI	VCTCGAGB	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	93
SatI	GCNGC	5 cut(s)	20, 571, 588, 711, 723
Sau3AI	GATC	3 cut(s)	65, 227, 415
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	258, 681
SfaNI	GCATC	4 cut(s)	158, 447, 599, 658
Sfr274I	CTCGAG	1 cut(s)	645
SlaI	CTCGAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	27
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	3 cut(s)	652, 704, 717
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	467, 477
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	380, 646
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	652, 704, 717
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	551
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	398, 477
TseI	GCWGC	5 cut(s)	19, 570, 587, 710, 722
Tsp45I	GTSAC	2 cut(s)	398, 477
TspDTI	ATGAA	7 cut(s)	183, 252, 441, 515, 552, 564, 717
TspGWI	ACGGA	2 cut(s)	27, 139
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	677
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.