Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006745.1

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Forward (+)

11995 .. 14989

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006745.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgtttgggttcgggaggcctaaatttgtcactaaatgcaaatctgatttaaagggcatgaaggtgaggcttgaggcggttaagaagaagaggaactctgtgctcaagtatttgaagaatgatgttgccgagcttctcaagaatggccttgatattaatgcatatggaagggctgagggagttatggttgagcaaaatatgtctgcctgttatgcactgactgagaactttcttgactgtatcgcgaatcatctttctctcatgcaaaatcagagggaatgtcctgaagaatgcaaggaagctgttgcatctgtgatgtatgctgcagcaagattttctgatttgccagaactgcgtgacctcagaaacatatttactggaaagtatggagattccctacaatcttttgtaaataaagagtttgcggataaattcaagtcaaaggcccctacaaaggagatgaaggtacaattaatgcatgacatagcgagagaatactcaatcgagtgggactccaaggctctggaacaaaagctgtttactccacctccaacaaacaaggggcagcctacgtatgggtctccgtgtgacagtgatgatgatatgtacagatcacagaagaaggataacgctcttccgaagagaaaaaataagggtgatggagacaaacggagctatgtaactgatgatactgcatcagtaggaagtgatgatgaagcaacagatatgtcccatgatgaccgaatgactgcttcaagttcagtaggaagtagatccgaggatgaagcagaaaacaaggtgccctcttcctataagttcactgcacccccttactacaaaccaaagcctcagaaaaaagaaagtgtctttgaggaacccaggaaggtgaatggtcatgctgaacgaaggtcagttaggagaacctcgaaaccaccagcaggtggtgacaatcaaggaagtgatccgagggatgaagaagagagggtaatggatgggcttttgatgcattacagtcataaacagtcaccctatgacgcaagcaagatgaagggaaatctaaaaccttgctacaaccagtcagatgaaaatactaatgaatccacaaggcacagaagcagcaggtctgaaagagcagcatctctgccaccaccagagcaatcaacttcacctgagccaacaaaaaggcatgctcgaggcaattccttacagccagatgcccatgtgcacccgaacctaccggagtatgatgaattggcagcccgaattgcagctcttagaggaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

428

Amino Acids

48.18

Weight (kDa)

8.44

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	929
Acc36I	ACCTGC	2 cut(s)	929, 1110
AccB1I	GGYRCC	1 cut(s)	799
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	77, 425
AclWI	GGATC	2 cut(s)	768, 956
AcsI	RAATTY	2 cut(s)	23, 431
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	468, 608
AfiI	CCNNNNNNNGG	4 cut(s)	454, 575, 938, 941
AgsI	TTSAA	3 cut(s)	115, 436, 756
AjnI	CCWGG	1 cut(s)	878
AluBI	AGCT	5 cut(s)	133, 302, 535, 675, 1271
AluI	AGCT	5 cut(s)	133, 302, 535, 675, 1271
Alw21I	GWGCWC	2 cut(s)	105, 1227
Alw26I	GTCTC	2 cut(s)	585, 657
Alw44I	GTGCAC	1 cut(s)	1223
AlwI	GGATC	2 cut(s)	768, 956
Ama87I	CYCGRG	1 cut(s)	1191
AoxI	GGCC	3 cut(s)	17, 145, 444
ApaLI	GTGCAC	1 cut(s)	1223
ApeKI	GCWGC	7 cut(s)	323, 326, 565, 1116, 1133, 1256, 1268
ApoI	RAATTY	2 cut(s)	23, 431
AseI	ATTAAT	2 cut(s)	156, 473
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	6 cut(s)	76, 668, 898, 956, 1017, 1158
AvaI	CYCGRG	1 cut(s)	1191
BaeGI	GKGCMC	2 cut(s)	804, 1227
BanI	GGYRCC	1 cut(s)	799
Bbv12I	GWGCWC	2 cut(s)	105, 1227
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	7 cut(s)	310, 338, 577, 1128, 1145, 1268, 1280
BccI	CCATC	2 cut(s)	653, 986
BciT130I	CCWGG	1 cut(s)	880
BcoDI	GTCTC	2 cut(s)	585, 657
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	929, 1110
BisI	GCNGC	7 cut(s)	324, 327, 566, 1117, 1134, 1257, 1269
BlsI	GCNGC	7 cut(s)	325, 328, 567, 1118, 1135, 1258, 1270
Bme1390I	CCNGG	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	1191
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	447, 801, 876
BmrFI	CCNGG	1 cut(s)	880
BmsI	GCATC	5 cut(s)	317, 704, 993, 1145, 1204
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu10I	CCTNAGC	2 cut(s)	174, 1170
BpuEI	CTTGAG	3 cut(s)	89, 92, 122
BsaAI	YACGTR	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	4 cut(s)	516, 777, 878, 965
BsaWI	WCCGGW	1 cut(s)	1237
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 532, 562
Bsc4I	CCNNNNNNNGG	4 cut(s)	454, 575, 938, 941
Bse1I	ACTGG	2 cut(s)	382, 1075
BseBI	CCWGG	1 cut(s)	880
BseDI	CCNNGG	4 cut(s)	516, 777, 878, 965
BseGI	GGATG	3 cut(s)	787, 976, 997
BseLI	CCNNNNNNNGG	4 cut(s)	454, 575, 938, 941
BseMII	CTCAG	5 cut(s)	165, 213, 376, 863, 1161
BseNI	ACTGG	2 cut(s)	382, 1075
BseSI	GKGCMC	2 cut(s)	804, 1227
BseXI	GCAGC	7 cut(s)	310, 338, 577, 1128, 1145, 1268, 1280
BsgI	GTGCAG	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	19, 147, 446
BshNI	GGYRCC	1 cut(s)	799
BsiHKAI	GWGCWC	2 cut(s)	105, 1227
BsiHKCI	CYCGRG	1 cut(s)	1191
BsiSI	CCGG	1 cut(s)	1238
BslFI	GGGAC	2 cut(s)	524, 715
BslI	CCNNNNNNNGG	4 cut(s)	454, 575, 938, 941
BsmAI	GTCTC	2 cut(s)	585, 657
BsmFI	GGGAC	2 cut(s)	524, 715
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	19, 147, 446
Bso31I	GGTCTC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	1191
Bsp1286I	GDGCHC	3 cut(s)	105, 804, 1227
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	611, 773, 961
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	2 cut(s)	77, 425
BspANI	GGCC	3 cut(s)	19, 147, 446
BspCNI	CTCAG	5 cut(s)	166, 214, 375, 862, 1162
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	447, 801, 876
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	2 cut(s)	929, 1110
BspPI	GGATC	2 cut(s)	768, 956
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	382, 1075
BssECI	CCNNGG	4 cut(s)	516, 777, 878, 965
BssMI	GATC	3 cut(s)	611, 773, 961
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	880
Bst4CI	ACNGT	4 cut(s)	239, 593, 1013, 1023
Bst6I	CTCTTC	5 cut(s)	83, 635, 639, 811, 972
BstAUI	TGTACA	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	1039, 1188
BstDEI	CTNAG	6 cut(s)	174, 222, 362, 849, 1170, 1274
BstF5I	GGATG	3 cut(s)	787, 976, 997
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	3 cut(s)	614, 776, 964
BstMAI	GTCTC	2 cut(s)	585, 657
BstMBI	GATC	3 cut(s)	611, 773, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 352, 1003, 1265
BstNI	CCWGG	1 cut(s)	880
BstNSI	RCATGY	1 cut(s)	1190
BstSCI	CCNGG	1 cut(s)	878
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	2 cut(s)	804, 1227
BstSNI	TACGTA	1 cut(s)	573
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	7 cut(s)	310, 338, 577, 1128, 1145, 1268, 1280
BstX2I	RGATCY	1 cut(s)	773
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	19, 147, 446
BtsCI	GGATG	3 cut(s)	787, 976, 997
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	3 cut(s)	215, 598, 819
BtuMI	TCGCGA	1 cut(s)	245
BveI	ACCTGC	2 cut(s)	929, 1110
Cac8I	GCNNGC	2 cut(s)	1039, 1188
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	2 cut(s)	467, 607
CviAII	CATG	8 cut(s)	58, 262, 479, 734, 896, 1187, 1220, 1284
CviQI	GTAC	2 cut(s)	467, 607
DdeI	CTNAG	6 cut(s)	174, 222, 362, 849, 1170, 1274
DpnI	GATC	3 cut(s)	613, 775, 963
DpnII	GATC	3 cut(s)	611, 773, 961
DraI	TTTAAA	1 cut(s)	51
Eam1104I	CTCTTC	5 cut(s)	83, 635, 639, 811, 972
EarI	CTCTTC	5 cut(s)	83, 635, 639, 811, 972
Eco105I	TACGTA	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	516
Eco147I	AGGCCT	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	1191
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	878
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	3 cut(s)	163, 480, 1008
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	8 cut(s)	61, 265, 482, 737, 899, 1190, 1223, 1287
FaqI	GGGAC	2 cut(s)	524, 715
FatI	CATG	8 cut(s)	57, 261, 478, 733, 895, 1186, 1219, 1283
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	7 cut(s)	324, 327, 566, 1117, 1134, 1257, 1269
FokI	GGATG	3 cut(s)	794, 983, 1004
Fsp4HI	GCNGC	7 cut(s)	324, 327, 566, 1117, 1134, 1257, 1269
GluI	GCNGC	7 cut(s)	324, 327, 566, 1117, 1134, 1257, 1269
HaeIII	GGCC	3 cut(s)	19, 147, 446
HapII	CCGG	1 cut(s)	1238
HgaI	GACGC	1 cut(s)	1043
Hin1II	CATG	8 cut(s)	61, 265, 482, 737, 899, 1190, 1223, 1287
HinfI	GANTC	4 cut(s)	247, 392, 512, 1097
HpaII	CCGG	1 cut(s)	1238
HphI	GGTGA	6 cut(s)	76, 668, 898, 956, 1017, 1158
Hpy166II	GTNNAC	3 cut(s)	540, 819, 1225
Hpy188III	TCNNGA	6 cut(s)	13, 139, 233, 244, 284, 524
Hpy8I	GTNNAC	3 cut(s)	540, 819, 1225
HpyAV	CCTTC	7 cut(s)	55, 162, 457, 616, 877, 900, 1042
HpyCH4III	ACNGT	4 cut(s)	239, 593, 1013, 1023
HpyCH4IV	ACGT	1 cut(s)	572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 352, 1003, 1265
HpyF3I	CTNAG	6 cut(s)	174, 222, 362, 849, 1170, 1274
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	8 cut(s)	61, 265, 482, 737, 899, 1190, 1223, 1287
Kzo9I	GATC	3 cut(s)	611, 773, 961
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	1 cut(s)	672
Lsp1109I	GCAGC	7 cut(s)	310, 338, 577, 1128, 1145, 1268, 1280
LweI	GCATC	5 cut(s)	317, 704, 993, 1145, 1204
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	6 cut(s)	28, 356, 587, 679, 944, 1023
MalI	GATC	3 cut(s)	613, 775, 963
MboI	GATC	3 cut(s)	611, 773, 961
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	3 cut(s)	105, 804, 1227
MluCI	AATT	6 cut(s)	23, 431, 470, 1198, 1250, 1263
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	575
Mph1103I	ATGCAT	3 cut(s)	163, 480, 1008
MseI	TTAA	4 cut(s)	50, 81, 156, 473
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	1238
MspR9I	CCNGG	1 cut(s)	880
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	880
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	212, 352, 1003, 1265
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	3 cut(s)	611, 773, 961
NlaIII	CATG	8 cut(s)	61, 265, 482, 737, 899, 1190, 1223, 1287
NlaIV	GGNNCC	3 cut(s)	447, 801, 876
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	5 cut(s)	28, 356, 587, 944, 1023
NruI	TCGCGA	1 cut(s)	245
NsiI	ATGCAT	3 cut(s)	163, 480, 1008
NspI	RCATGY	1 cut(s)	1190
PaeI	GCATGC	1 cut(s)	1190
PaeR7I	CTCGAG	1 cut(s)	1191
PaqCI	CACCTGC	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	247, 392, 1097
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	7 cut(s)	325, 328, 567, 1118, 1135, 1258, 1270
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	573
PshBI	ATTAAT	2 cut(s)	156, 473
Psp6I	CCWGG	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	878
PspN4I	GGNNCC	3 cut(s)	447, 801, 876
PspPI	GGNCC	1 cut(s)	445
PspXI	VCTCGAGB	1 cut(s)	1191
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	773
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	2 cut(s)	468, 608
RsaNI	GTAC	2 cut(s)	467, 607
RseI	CAYNNNNRTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	50, 81, 156, 473
SatI	GCNGC	7 cut(s)	324, 327, 566, 1117, 1134, 1257, 1269
Sau3AI	GATC	3 cut(s)	611, 773, 961
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	880
SduI	GDGCHC	3 cut(s)	105, 804, 1227
SfaNI	GCATC	5 cut(s)	317, 704, 993, 1145, 1204
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	1191
SlaI	CTCGAG	1 cut(s)	1191
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	4 cut(s)	71, 104, 137, 1191
SmoI	CTYRAG	4 cut(s)	71, 104, 137, 1191
SnaBI	TACGTA	1 cut(s)	573
SphI	GCATGC	1 cut(s)	1190
Sse9I	AATT	6 cut(s)	23, 431, 470, 1198, 1250, 1263
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	77, 425
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	878
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	4 cut(s)	239, 593, 1013, 1023
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	3 cut(s)	504, 926, 1192
TaqII	GACCGA	1 cut(s)	756
TasI	AATT	6 cut(s)	23, 431, 470, 1198, 1250, 1263
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	247, 392, 1097
Tru1I	TTAA	4 cut(s)	50, 81, 156, 473
Tru9I	TTAA	4 cut(s)	50, 81, 156, 473
TscAI	CASTG	3 cut(s)	222, 598, 826
TseFI	GTSAC	5 cut(s)	28, 356, 587, 944, 1023
TseI	GCWGC	7 cut(s)	323, 326, 565, 1116, 1133, 1256, 1268
Tsp45I	GTSAC	5 cut(s)	28, 356, 587, 944, 1023
TspDTI	ATGAA	9 cut(s)	74, 476, 729, 798, 987, 1061, 1098, 1110, 1263
TspGWI	ACGGA	2 cut(s)	573, 685
TspRI	CASTG	3 cut(s)	222, 598, 826
Van91I	CCANNNNNTGG	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	1223
VspI	ATTAAT	2 cut(s)	156, 473
XapI	RAATTY	2 cut(s)	23, 431
XceI	RCATGY	1 cut(s)	1190
XhoI	CTCGAG	1 cut(s)	1191
Zsp2I	ATGCAT	3 cut(s)	163, 480, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.