Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Reverse (-)

17586152 .. 17600198

Gene Structure 14047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTTTGCCGATCTTCTCAAGAGTGGCCTTGATATTAATGCATATGGAAGGAAAAAAATATCTGAAACTAAGAAACATATTAGCTGAAAAATATGGAGATTCCGCACAATCTTTTGTAAATAAAGAGTTTGTGGACAAATTCAAGCCAAAGCCCCTTACAAAGGATATGAAGGTACAAGTACTAATGCATGACATAGCCAGAGAATACTCAATCGAATGGGGGATGGTGCCCTTGGGAGTTATAGTAGCAGTAGCAAGGCTAGTGCTATTAATACGTGGAGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCACAGATAAGCTCATTGAAGCTGTAGAAAGAAAAATCAACGAGTTGAGTGAGGCAGCAGAAGATAGGGACAGTGTTAATGAAGAAGGAAGTGGAAATGATACTGGATCAAGTGAGGAGGTTGAAGTGACGGATAACAATGGAGAAAGAAGCCATCTGGGACCCTGGGTTGTGCTCAATCCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

5.31

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	3 cut(s)	177, 183, 290
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	145, 335, 440
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	4 cut(s)	86, 328, 338, 500
AluI	AGCT	4 cut(s)	86, 328, 338, 500
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	140
AseI	ATTAAT	2 cut(s)	38, 272
AspS9I	GGNCC	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	220, 477
BciT130I	CCWGG	1 cut(s)	481
BfaI	CTAG	2 cut(s)	263, 296
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	3 cut(s)	231, 477, 478
BmrFI	CCNGG	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	4
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	234, 479, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	3 cut(s)	234, 479, 480
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	398, 489
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	398, 489
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	234, 492
Bsp143I	GATC	2 cut(s)	12, 422
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	231, 477, 478
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	234, 479, 480
BssMI	GATC	2 cut(s)	12, 422
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	2 cut(s)	288, 389
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	71, 501
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	15, 425
BstMBI	GATC	2 cut(s)	12, 422
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	176, 182, 289
CviAII	CATG	2 cut(s)	191, 292
CviQI	GTAC	3 cut(s)	176, 182, 289
DdeI	CTNAG	2 cut(s)	71, 501
DpnI	GATC	2 cut(s)	14, 424
DpnII	GATC	2 cut(s)	12, 422
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	2 cut(s)	45, 192
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	194, 295
FaiI	YATR	9 cut(s)	45, 47, 80, 96, 170, 192, 197, 245, 293
FaqI	GGGAC	2 cut(s)	398, 489
FatI	CATG	2 cut(s)	190, 291
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	263, 296
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	194, 295
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	44, 166, 395
HpyCH4III	ACNGT	2 cut(s)	288, 389
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	43, 190
HpyF3I	CTNAG	2 cut(s)	71, 501
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	194, 295
KflI	GGGWCCC	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	12, 422
LpnPI	CCDG	5 cut(s)	214, 405, 458, 466, 493
Lsp1109I	GCAGC	1 cut(s)	383
MaeI	CTAG	2 cut(s)	263, 296
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	14, 424
MboI	GATC	2 cut(s)	12, 422
MboII	GAAGA	3 cut(s)	7, 389, 410
MhlI	GDGCHC	2 cut(s)	234, 492
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	5 cut(s)	275, 294, 361, 424, 427
Mph1103I	ATGCAT	2 cut(s)	45, 192
MseI	TTAA	3 cut(s)	38, 272, 393
MslI	CAYNNNNRTG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	2 cut(s)	12, 422
NlaIII	CATG	2 cut(s)	194, 295
NlaIV	GGNNCC	3 cut(s)	231, 477, 478
NmuCI	GTSAC	1 cut(s)	442
NsiI	ATGCAT	2 cut(s)	45, 192
NspI	RCATGY	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	476
PshBI	ATTAAT	2 cut(s)	38, 272
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	231, 477, 478
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
RsaI	GTAC	3 cut(s)	177, 183, 290
RsaNI	GTAC	3 cut(s)	176, 182, 289
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	38, 272, 393
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	12, 422
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	234, 492
SetI	ASST	7 cut(s)	88, 177, 280, 330, 340, 438, 502
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	263, 296
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	288, 389
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	140
TatI	WGTACW	2 cut(s)	181, 288
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	38, 272, 393
Tru9I	TTAA	3 cut(s)	38, 272, 393
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	185, 411
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	2 cut(s)	38, 272
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	2 cut(s)	263, 296
ZrmI	AGTACT	1 cut(s)	183
Zsp2I	ATGCAT	2 cut(s)	45, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.