Rmu_sc0000596.1_g000009

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000596.1
OG0003526
Physical Location & Seq
Reverse (-)
38486 .. 42757
4272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000596.1_g000009.1.cds

Sequence Viewer

Length: 660 bp
atgcttcgctcaaccgcccaagcgcctagtggcctgcccaggcagccgcccaaccccagctcgcctaatcccagcgacttggcattcctcgagtctgagagccgccgcccagagcctaggcggccgaacgatttgcagcatcgccgtcaaacttcccggccttgccacgccctccacagctcgaatcttgatgcaattcttccacaaaattgtagaggagatcgaggcgaagaaaacccaactggtttgacgtcctatggtggccggaggaggaacaatcggccggaaaaccaaattgagcttactaatgttgagagtccagaaaggcaagcttgtcaaaagtctgtgactctttcaactccctataggccaactccatcagctctagagtggcaaactgatccaacacccactccttcagctcccgaatggcctactggacagtacatgctagtgaggataatagaagttgccacagataagctcattgaagctgtagaaagaaaaatcaacgagttgagtgaggcagcagaagatagggacagtgttaatgaagaaggaagtggaaatgatactggatcaagtgaggaggttgaagtgacggataacaatggagaaagaagccatctgggaccctgggttgtgctcaacccagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

219

Amino Acids

24.29

Weight (kDa)

5.06

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 254
AciI CCGC 5 cut(s) 15, 47, 103, 106, 121
AclWI GGATC 2 cut(s) 395, 586
AcoI YGGCCR 3 cut(s) 122, 262, 281
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 446
AgsI TTSAA 3 cut(s) 357, 491, 596
AjnI CCWGG 2 cut(s) 38, 635
AluBI AGCT 9 cut(s) 60, 180, 301, 332, 383, 422, 484, 494, 656
AluI AGCT 9 cut(s) 60, 180, 301, 332, 383, 422, 484, 494, 656
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 2 cut(s) 395, 586
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 7 cut(s) 31, 122, 158, 262, 281, 368, 431
ApeKI GCWGC 3 cut(s) 43, 136, 527
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 632
AvrII CCTAGG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 3 cut(s) 55, 148, 539
BccI CCATC 2 cut(s) 385, 633
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 40, 637
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 4 cut(s) 27, 117, 386, 452
BfmI CTRYAG 2 cut(s) 364, 495
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 121
BisI GCNGC 7 cut(s) 44, 47, 103, 106, 122, 137, 528
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 7 cut(s) 45, 48, 104, 107, 123, 138, 529
Bme1390I CCNGG 3 cut(s) 40, 157, 637
Bme18I GGWCC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 633, 634
BmrFI CCNGG 3 cut(s) 40, 157, 637
BmsI GCATC 2 cut(s) 148, 181
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 4 cut(s) 38, 116, 635, 636
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse1I ACTGG 3 cut(s) 247, 442, 580
BseBI CCWGG 2 cut(s) 40, 637
BseDI CCNNGG 4 cut(s) 38, 116, 635, 636
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 247, 442, 580
BseRI GAGGAG 3 cut(s) 231, 283, 602
BseX3I CGGCCG 2 cut(s) 122, 281
BseXI GCAGC 3 cut(s) 55, 148, 539
BseYI CCCAGC 3 cut(s) 56, 71, 652
Bsh1285I CGRYCG 2 cut(s) 125, 284
BshFI GGCC 7 cut(s) 33, 124, 160, 264, 283, 370, 433
BsiEI CGRYCG 2 cut(s) 125, 284
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 3 cut(s) 157, 265, 284
BslFI GGGAC 2 cut(s) 554, 645
BsmFI GGGAC 2 cut(s) 554, 645
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 7 cut(s) 33, 124, 160, 264, 283, 370, 433
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 3 cut(s) 220, 400, 578
BspACI CCGC 5 cut(s) 15, 47, 103, 106, 121
BspANI GGCC 7 cut(s) 33, 124, 160, 264, 283, 370, 433
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 633, 634
BspPI GGATC 2 cut(s) 395, 586
BsrI ACTGG 3 cut(s) 247, 442, 580
BssECI CCNNGG 4 cut(s) 38, 116, 635, 636
BssMI GATC 3 cut(s) 220, 400, 578
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 40, 637
Bst4CI ACNGT 2 cut(s) 444, 545
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 35, 62, 330
BstDEI CTNAG 2 cut(s) 96, 657
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 3 cut(s) 223, 403, 581
BstMBI GATC 3 cut(s) 220, 400, 578
BstMCI CGRYCG 2 cut(s) 125, 284
BstMWI GCNNNNNNNGC 2 cut(s) 43, 121
BstNI CCWGG 2 cut(s) 40, 637
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 38, 155, 635
BstSFI CTRYAG 2 cut(s) 364, 495
BstV1I GCAGC 3 cut(s) 55, 148, 539
BstXI CCANNNNNNTGG 1 cut(s) 79
BstZI CGGCCG 2 cut(s) 122, 281
BsuRI GGCC 7 cut(s) 33, 124, 160, 264, 283, 370, 433
BtgZI GCGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 35, 62, 330
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 445
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 96, 657
DpnI GATC 3 cut(s) 222, 402, 580
DpnII GATC 3 cut(s) 220, 400, 578
EaeI YGGCCR 3 cut(s) 122, 262, 281
EagI CGGCCG 2 cut(s) 122, 281
EclXI CGGCCG 2 cut(s) 122, 281
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 632
Eco52I CGGCCG 2 cut(s) 122, 281
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 38, 635
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 451
FaiI YATR 3 cut(s) 258, 366, 449
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 2 cut(s) 554, 645
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 7 cut(s) 44, 47, 103, 106, 122, 137, 528
Fsp4HI GCNGC 7 cut(s) 44, 47, 103, 106, 122, 137, 528
FspBI CTAG 4 cut(s) 27, 117, 386, 452
GlaI GCGC 1 cut(s) 24
GluI GCNGC 7 cut(s) 44, 47, 103, 106, 122, 137, 528
GsaI CCCAGC 3 cut(s) 60, 75, 656
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 7 cut(s) 33, 124, 160, 264, 283, 370, 433
HapII CCGG 3 cut(s) 157, 265, 284
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 4 cut(s) 92, 184, 316, 349
HpaII CCGG 3 cut(s) 157, 265, 284
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 188, 320, 386, 425
HpyAV CCTTC 2 cut(s) 426, 551
HpyCH4III ACNGT 2 cut(s) 444, 545
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 136, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 121
HpyF3I CTNAG 2 cut(s) 96, 657
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 23
KflI GGGWCCC 1 cut(s) 632
Kzo9I GATC 3 cut(s) 220, 400, 578
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 3 cut(s) 55, 148, 539
LweI GCATC 2 cut(s) 148, 181
MaeI CTAG 4 cut(s) 27, 117, 386, 452
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 346, 598
MalI GATC 3 cut(s) 222, 402, 580
MboI GATC 3 cut(s) 220, 400, 578
MboII GAAGA 4 cut(s) 191, 242, 545, 566
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 3 cut(s) 195, 208, 294
MlyI GAGTC 3 cut(s) 101, 325, 343
MmeI TCCRAC 1 cut(s) 428
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 3 cut(s) 157, 265, 284
MspR9I CCNGG 3 cut(s) 40, 157, 637
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 2 cut(s) 40, 637
MwoI GCNNNNNNNGC 2 cut(s) 43, 121
NciI CCSGG 1 cut(s) 157
NdeII GATC 3 cut(s) 220, 400, 578
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 633, 634
NmuCI GTSAC 2 cut(s) 346, 598
NspI RCATGY 1 cut(s) 451
PaeR7I CTCGAG 1 cut(s) 89
PasI CCCWGGG 1 cut(s) 636
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 7 cut(s) 45, 48, 104, 107, 123, 138, 529
PleI GAGTC 3 cut(s) 100, 324, 343
PpsI GAGTC 3 cut(s) 100, 324, 343
PpuMI RGGWCCY 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 38, 635
PspFI CCCAGC 3 cut(s) 56, 71, 652
PspGI CCWGG 2 cut(s) 38, 635
PspN4I GGNNCC 2 cut(s) 633, 634
PspPI GGNCC 1 cut(s) 632
PspPPI RGGWCCY 1 cut(s) 632
PspXI VCTCGAGB 1 cut(s) 89
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 7 cut(s) 44, 47, 103, 106, 122, 137, 528
Sau3AI GATC 3 cut(s) 220, 400, 578
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 3 cut(s) 101, 325, 343
ScrFI CCNGG 3 cut(s) 40, 157, 637
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 2 cut(s) 148, 181
SfcI CTRYAG 2 cut(s) 364, 495
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 632
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 195, 208, 294
SsiI CCGC 5 cut(s) 15, 47, 103, 106, 121
SspMI CTAG 4 cut(s) 27, 117, 386, 452
StyD4I CCNGG 3 cut(s) 38, 155, 635
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 444, 545
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 90, 182, 223
TasI AATT 3 cut(s) 195, 208, 294
TatI WGTACW 1 cut(s) 444
TauI GCSGC 4 cut(s) 49, 105, 108, 124
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 346, 598
TseI GCWGC 3 cut(s) 43, 136, 527
Tsp45I GTSAC 2 cut(s) 346, 598
TspDTI ATGAA 1 cut(s) 567
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 632
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 116
XspI CTAG 4 cut(s) 27, 117, 386, 452
ZraI GACGTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.