Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Forward (+)

53002364 .. 53004278

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTGAGAGTCCAGAAAGGCAAGCTGGTCAAAAGTCTGCCACTCCTTCAGCTCCATATAGGCGGACTCCTTCAGCTCCAGAGTGGCCAACTGATCCAACACCCACTCCTTCGACTCCCGAATGGCCGACTGGTTCAAGACCTGCCACTCCTTCATCTCCTAACTGTTCATCTCATCAAACACTTGCCACTCCTTCAGCTGCCAATGTCATATATTCTGAACCAACTTTGTAGGCTATTAATACGTGGAGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCATAGATAAGCTCAATGAAGCTGTAGAAAGAAAAATCAACGAGTCGAGTGAGGCAGCAGAAGATAGTGACAATGTTAAGGAACAAGGAAGTGGAAATGATATTGGATCAAGTGAAGAGGTAGAAGTGACGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGGTCAACCCAACTTGGGCTTCACAAGCTTCATTGAGGGACAACAGTGGAAGAGACCAAGATGTCCAGGGTAGCTATCTAGCTGTTTTGAGTTTGAAACTGGTTCTGAACTCTTTATTAGAAAATCAGGCTAAAAAGCATCTGAGACTTGAGGAAGTTCCCCTAAGAGAAGCTCTATATCACCAACCATTACTCAAAGATGAATGGTCAGCTGCCAGCACAGCGCTGGCCTTCGTGACCAGCAAACACCCACCACCTTCGAAGCTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

242

Amino Acids

26.71

Weight (kDa)

6.5

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	88, 397
AcoI	YGGCCR	2 cut(s)	85, 124
AcuI	CTGAAG	3 cut(s)	32, 56, 179
AfaI	GTAC	1 cut(s)	257
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	137, 550
AjnI	CCWGG	2 cut(s)	446, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
Alw26I	GTCTC	2 cut(s)	501, 592
AlwI	GGATC	2 cut(s)	88, 397
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	3 cut(s)	85, 124, 681
ApeKI	GCWGC	3 cut(s)	199, 338, 665
AseI	ATTAAT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	186, 350, 652
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	2 cut(s)	448, 521
BcoDI	GTCTC	2 cut(s)	501, 592
BfaI	CTAG	2 cut(s)	263, 533
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	200, 339, 666
BlsI	GCNGC	3 cut(s)	201, 340, 667
Bme1390I	CCNGG	2 cut(s)	448, 521
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	444, 445
BmrFI	CCNGG	2 cut(s)	448, 521
BmsI	GCATC	1 cut(s)	601
BpmI	CTGGAG	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	446, 447, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	135, 558
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	448, 521
BseDI	CCNNGG	3 cut(s)	446, 447, 520
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	135, 558
BseXI	GCAGC	3 cut(s)	186, 350, 652
BshFI	GGCC	3 cut(s)	87, 126, 683
BslFI	GGGAC	2 cut(s)	456, 506
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	2 cut(s)	501, 592
BsmFI	GGGAC	2 cut(s)	456, 506
BsnI	GGCC	3 cut(s)	87, 126, 683
Bso31I	GGTCTC	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	93, 389
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	3 cut(s)	87, 126, 683
BspCNI	CTCAG	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	444, 445
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	88, 397
BspT104I	TTCGAA	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	135, 558
BssECI	CCNNGG	3 cut(s)	446, 447, 520
BssMI	GATC	2 cut(s)	93, 389
Bst2UI	CCWGG	2 cut(s)	448, 521
Bst4CI	ACNGT	3 cut(s)	166, 255, 500
Bst6I	CTCTTC	2 cut(s)	393, 499
BstBAI	YACGTR	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	23, 670, 681
BstDEI	CTNAG	2 cut(s)	596, 617
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	2 cut(s)	96, 392
BstMAI	GTCTC	2 cut(s)	501, 592
BstMBI	GATC	2 cut(s)	93, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 674
BstNI	CCWGG	2 cut(s)	448, 521
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	446, 519
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	186, 350, 652
BsuRI	GGCC	3 cut(s)	87, 126, 683
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	23, 670, 681
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	596, 617
DpnI	GATC	2 cut(s)	95, 391
DpnII	GATC	2 cut(s)	93, 389
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	2 cut(s)	85, 124
Eam1104I	CTCTTC	2 cut(s)	393, 499
EarI	CTCTTC	2 cut(s)	393, 499
EciI	GGCGGA	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	443
Eco47III	AGCGCT	1 cut(s)	678
Eco57I	CTGAAG	3 cut(s)	32, 56, 179
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	446, 519
FaeI	CATG	1 cut(s)	262
FaiI	YATR	7 cut(s)	57, 59, 211, 213, 260, 287, 631
FaqI	GGGAC	2 cut(s)	456, 506
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	200, 339, 666
Fsp4HI	GCNGC	3 cut(s)	200, 339, 666
FspBI	CTAG	2 cut(s)	263, 533
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	3 cut(s)	200, 339, 666
GsuI	CTGGAG	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	3 cut(s)	87, 126, 683
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	4 cut(s)	9, 66, 114, 326
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	3 cut(s)	219, 561, 597
Hpy188III	TCNNGA	6 cut(s)	13, 79, 118, 137, 688, 723
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	8 cut(s)	56, 80, 119, 161, 203, 422, 694, 720
HpyCH4III	ACNGT	3 cut(s)	166, 255, 500
HpyCH4IV	ACGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 674
HpyF3I	CTNAG	2 cut(s)	596, 617
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	677
KflI	GGGWCCC	1 cut(s)	443
Kzo9I	GATC	2 cut(s)	93, 389
LmnI	GCTCC	2 cut(s)	57, 81
Lsp1109I	GCAGC	3 cut(s)	186, 350, 652
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	2 cut(s)	263, 533
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	3 cut(s)	350, 409, 688
MalI	GATC	2 cut(s)	95, 391
MboI	GATC	2 cut(s)	93, 389
MboII	GAAGA	3 cut(s)	356, 410, 516
MlsI	TGGCCA	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	4 cut(s)	18, 60, 108, 335
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	242, 261, 328, 394, 483, 598
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	239, 360
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	199, 665
MspR9I	CCNGG	2 cut(s)	448, 521
MvaI	CCWGG	2 cut(s)	448, 521
MwoI	GCNNNNNNNGC	2 cut(s)	479, 674
NdeII	GATC	2 cut(s)	93, 389
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	444, 445
NmuCI	GTSAC	3 cut(s)	350, 409, 688
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	713
PasI	CCCWGGG	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	201, 340, 667
PleI	GAGTC	4 cut(s)	17, 60, 108, 334
PpsI	GAGTC	4 cut(s)	17, 60, 108, 334
Ppu21I	YACGTR	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	446, 519
PspGI	CCWGG	2 cut(s)	446, 519
PspN4I	GGNNCC	2 cut(s)	444, 445
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
PvuII	CAGCTG	2 cut(s)	199, 665
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	239, 360
SatI	GCNGC	3 cut(s)	200, 339, 666
Sau3AI	GATC	2 cut(s)	93, 389
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	4 cut(s)	18, 60, 108, 335
ScrFI	CCNGG	2 cut(s)	448, 521
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	713
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	263, 533
StyD4I	CCNGG	2 cut(s)	446, 519
TaaI	ACNGT	3 cut(s)	166, 255, 500
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	112, 329, 713
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	239, 360
Tru9I	TTAA	2 cut(s)	239, 360
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	3 cut(s)	350, 409, 688
TseI	GCWGC	3 cut(s)	199, 338, 665
Tsp45I	GTSAC	3 cut(s)	350, 409, 688
TspDTI	ATGAA	5 cut(s)	143, 158, 315, 474, 669
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	239
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XspI	CTAG	2 cut(s)	263, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.