Rw6G010710

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003526
Physical Location & Seq
Forward (+)
18570645 .. 18571032
388 bp
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UTR
Exon/CDS
Intron
Rw6G010710.1

Sequence Viewer

Length: 309 bp
ATGTCTGAAGAATGCAAGGAAGCTGTTGCATCTGTGATATATGCTACAACAAGATTTCTTGATTTACCAGAACTGCATGACCTCAGAAACATATTAGCTGAAAAATATGGAGATTCCGCACAATCTTTTGTAAATAAAGAGTTTGTGGACAAATTCAAGCCAAAGCCCCTTACAAAGGATATGAAGGTACAAGTACTAATGCATGACATAGCCAGAGAATACTCAATCGAATGGGGGATGGTGCCCTTGGGAGTTATAGTAGCAGTAGCAAGGCTAGTGTATGACTCAATTATAAAACTGAATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

5.64

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 2 - 77 9.4e-19 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 189, 195
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 23, 98
AluI AGCT 2 cut(s) 23, 98
ApoI RAATTY 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 241
BccI CCATC 1 cut(s) 232
BfaI CTAG 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 175
BsmI GAATGC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 246
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 243
Csp6I GTAC 2 cut(s) 188, 194
CviAII CATG 2 cut(s) 77, 203
CviJI RGCY 6 cut(s) 23, 98, 160, 166, 212, 274
CviKI_1 RGCY 6 cut(s) 23, 98, 160, 166, 212, 274
CviQI GTAC 2 cut(s) 188, 194
DdeI CTNAG 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 80, 206
FatI CATG 2 cut(s) 76, 202
FokI GGATG 1 cut(s) 250
FspBI CTAG 1 cut(s) 275
Hin1II CATG 2 cut(s) 80, 206
HinfI GANTC 2 cut(s) 113, 284
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 7, 86, 308
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 15, 29, 76, 202
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 2 cut(s) 80, 206
LpnPI CCDG 2 cut(s) 81, 226
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 275
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 152, 288
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 80, 206
NlaIV GGNNCC 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 204
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 113
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PsiI TTATAA 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 2 cut(s) 189, 195
RsaNI GTAC 2 cut(s) 188, 194
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 25, 84, 100, 189
SfaNI GCATC 1 cut(s) 38
Sse9I AATT 2 cut(s) 152, 288
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 152, 288
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 152
XspI CTAG 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.