Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003526

Physical Location & Seq

Genomic Coordinates Forward (+)

5050458 .. 5055510

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGAAAAGCAAATGTGGGAGGGAAAGGTGGTTTTGGCTTTGTGCATCTCCAGAGTCCTCAGAGAACAAGATGTTGAGGGGATTCAGAAAGCCAAAATTTTTCACCAAATGCAAATCTGATATAAAGATCACGAAGTTGAGGTTTGAGACGATAAAGAAGAAGAGGAGCGCGGTGCAGAAGTATTTGAAGAATGATATTGCTGATCTTCTGAGGAGTGGCCTCGGCATCAATGCCTATGGCAGGGCTGAGGGGCTTCTGGTTGAGCAAAATATGTCTGCCTGCTATGAATTAACTGAGAACTTTATTGGATGTATCTCAAATAATCTCTCTCTCATGCAAAACCAGAGCGAATGTCCTGAGGAATGCAGGGAAGCTGTTCCATCTTTGATGTACGCTGCAGCACGATTTGCTGATTTGCCAGAACTGCGTGACCTCAGAAATATGTTTACTGAAAGATATGGAAATTCCCTTGAACCTTTTGTGAATAAAGAGCTTGTGGAGAGGTTGAAGGCGAAGCCTCCTACAAAGGAGATGAAGATTCAGTTATTGCATGACGTAGCACAAGAGTTCTCAATTGAATGGGATTCAAAGGCTTTGGAACAGAAACTGTATACTCCATCTCCACTTGACCAAGGACAGTGCAGATATGGGTCTCCAGGCAACAGTGATGATGATATGCAGAAATCACATAAAAGTAGGGATAATTCTTTTCCAAAGAGAAAAAACCAGGATGCTGGGGACGTATTGAGCCACAGAACAAAGTATACTGCATCAGTAGGAAGTGAAGATGAAACGACAGATGTGTCCCAAGACGCACCAAAGTATTGTTCGAGTTCAGTAGGAAGTACATCAGGGGATGAAGCGGATAACAAGATGCCCTTCTACTCCAAATTTGCTCCACCGCCTTACTACAAACCAAAACCTGAAAGAAAGGAAAGCAGCTTTGAGGAACCCACAAAGTTAAACAGCCATGTTGAAACAGATCACCATAATGATGTTTCAGTTGGCGAAGATGATCCAAAACCAAGATCAGTTAGGAGGAAAAACTTGAAACCACCACCCGGTCGTGAGAATCTTGACAGGAATGATCCAAGGGATGAAGAAGAGAGGGTACTGGATGGGCTTTTGATGCATTACAGTAAGAAACAGGCACCCTATGAATCGAGACAGATGAAGGGCAATCCAAGTCAAGTAGACAATGATGCTGGTGAATCTGCGAACAGAAGCAGAAGATCTCAGCGAGATGCTCCATCAGCCAGAGCATCATCTCTTCCACCAGAGCCAACATCTCCAATTGAGGCACCGAAAAGGCACGACAGAACCAATTCCTTGCAACCAGATGCACATGTGCACCCGAAACTACCGGAGTATGATGAACTGGCAGCTCGAATTGCAGCGCTTAGAGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

471

Amino Acids

53.41

Weight (kDa)

8.38

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52315 AT1G52315 AT1G79910 AT1G79910 AT1G79910
fragaria_vesca	FvH4_6g31290 FvH4_6g31290
malus_domestica	MD09G1212300.v1.1 MD17G1194200.v1.1
prunus_persica	Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1 Prupe.3G070200_v2.0.a1
pyrus_communis	pycom09g12950
rosa_chinensis	RchiOBHm_Chr2g0138021 RchiOBHm_Chr6g0262501
rosa_laevigata	RLG00000014421 RLG00000019713
rosa_multiflora	Rmu_sc0000596.1_g000009 Rmu_sc0006745.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106570 Rroxscaffold_7G00205210
rosa_rugosa	Rorug02G0349100
rosa_samantha	Rh2AG115900 Rh2AG395800 Rh2BG410900 Rh2CG382300 Rh2DG417600 Rh6BG112900 Rh6CG111200 Rh6DG100900
rosa_wichuraiana	Rw2G032320 Rw6G010270 Rw6G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	802
AccB1I	GGYRCC	2 cut(s)	1150, 1300
AccI	GTMKAC	3 cut(s)	611, 764, 1194
AccII	CGCG	1 cut(s)	170
AciI	CCGC	3 cut(s)	170, 863, 902
AclWI	GGATC	2 cut(s)	1010, 1082
AcsI	RAATTY	3 cut(s)	95, 463, 890
AfaI	GTAC	3 cut(s)	392, 847, 1113
AfeI	AGCGCT	1 cut(s)	1398
AfiI	CCNNNNNNNGG	2 cut(s)	240, 1061
AflIII	ACRYGT	1 cut(s)	1345
AgsI	TTSAA	7 cut(s)	187, 473, 508, 578, 588, 977, 1051
AjnI	CCWGG	2 cut(s)	655, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
AluBI	AGCT	4 cut(s)	374, 493, 942, 1385
AluI	AGCT	4 cut(s)	374, 493, 942, 1385
Alw21I	GWGCWC	1 cut(s)	1353
Alw26I	GTCTC	3 cut(s)	140, 657, 1159
Alw44I	GTGCAC	1 cut(s)	1349
AlwI	GGATC	2 cut(s)	1010, 1082
AlwNI	CAGNNNCTG	1 cut(s)	607
Aor51HI	AGCGCT	1 cut(s)	1398
AoxI	GGCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	1349
ApeKI	GCWGC	5 cut(s)	395, 398, 939, 1382, 1394
ApoI	RAATTY	3 cut(s)	95, 463, 890
Asp700I	GAANNNNTTC	2 cut(s)	375, 1324
AspLEI	GCGC	2 cut(s)	170, 1399
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	3 cut(s)	94, 977, 1220
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	1353
BanI	GGYRCC	2 cut(s)	1150, 1300
BarI	GAAGNNNNNNTAC	2 cut(s)	1095, 1127
Bbv12I	GWGCWC	1 cut(s)	1353
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	5 cut(s)	382, 410, 951, 1394, 1406
BccI	CCATC	4 cut(s)	388, 625, 1112, 1258
BciT130I	CCWGG	2 cut(s)	657, 728
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	3 cut(s)	140, 657, 1159
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	1400
BglII	AGATCT	1 cut(s)	1232
BisI	GCNGC	5 cut(s)	396, 399, 940, 1383, 1395
BlsI	GCNGC	5 cut(s)	397, 400, 941, 1384, 1396
Bme1390I	CCNGG	3 cut(s)	657, 728, 1062
BmiI	GGNNCC	3 cut(s)	951, 1152, 1302
BmrFI	CCNGG	3 cut(s)	657, 728, 1062
BpmI	CTGGAG	2 cut(s)	33, 639
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	1062
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	3 cut(s)	220, 631, 1091
BsaWI	WCCGGW	1 cut(s)	1363
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 1061
Bse1I	ACTGG	2 cut(s)	1119, 1383
Bse21I	CCTNAGG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	657, 728
BseDI	CCNNGG	3 cut(s)	220, 631, 1091
BseGI	GGATG	5 cut(s)	314, 736, 862, 1102, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	240, 1061
BseMII	CTCAG	7 cut(s)	72, 200, 237, 285, 348, 448, 1250
BseNI	ACTGG	2 cut(s)	1119, 1383
BseRI	GAGGAG	2 cut(s)	178, 226
BseSI	GKGCMC	1 cut(s)	1353
BseXI	GCAGC	5 cut(s)	382, 410, 951, 1394, 1406
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	2 cut(s)	194, 661
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	1066
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	2 cut(s)	1150, 1300
BsiEI	CGRYCG	1 cut(s)	1066
BsiHKAI	GWGCWC	1 cut(s)	1353
BsiSI	CCGG	2 cut(s)	1062, 1364
BslFI	GGGAC	2 cut(s)	752, 790
BslI	CCNNNNNNNGG	2 cut(s)	240, 1061
BsmAI	GTCTC	3 cut(s)	140, 657, 1159
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	752, 790
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	1353
Bsp143I	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
BspACI	CCGC	3 cut(s)	170, 863, 902
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	7 cut(s)	71, 201, 238, 286, 349, 447, 1249
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	3 cut(s)	951, 1152, 1302
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	1010, 1082
BspT107I	GGYRCC	2 cut(s)	1150, 1300
BspTNI	GGTCTC	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	1119, 1383
BssECI	CCNNGG	3 cut(s)	220, 631, 1091
BssMI	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
BssNAI	GTATAC	2 cut(s)	612, 765
BssT1I	CCWWGG	2 cut(s)	631, 1091
Bst1107I	GTATAC	2 cut(s)	612, 765
Bst2UI	CCWGG	2 cut(s)	657, 728
Bst4CI	ACNGT	4 cut(s)	609, 639, 665, 1139
Bst6I	CTCTTC	3 cut(s)	155, 1098, 1275
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	8 cut(s)	58, 209, 246, 294, 357, 434, 1236, 1400
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	314, 736, 862, 1102, 1123
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	1400
BstHHI	GCGC	2 cut(s)	170, 1399
BstKTI	GATC	7 cut(s)	129, 205, 985, 1018, 1031, 1090, 1235
BstMAI	GTCTC	3 cut(s)	140, 657, 1159
BstMBI	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
BstMCI	CGRYCG	1 cut(s)	1066
BstMWI	GCNNNNNNNGC	5 cut(s)	407, 424, 1129, 1253, 1391
BstNI	CCWGG	2 cut(s)	657, 728
BstNSI	RCATGY	1 cut(s)	1349
BstSCI	CCNGG	3 cut(s)	655, 726, 1060
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	1353
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	5 cut(s)	382, 410, 951, 1394, 1406
BstX2I	RGATCY	1 cut(s)	1232
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	1232
BstZ17I	GTATAC	2 cut(s)	612, 765
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	314, 736, 862, 1102, 1123
BtsIMutI	CAGTG	2 cut(s)	644, 670
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	2 cut(s)	170, 1399
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	391, 846, 1112
CviAII	CATG	4 cut(s)	334, 551, 971, 1346
CviQI	GTAC	3 cut(s)	391, 846, 1112
DdeI	CTNAG	8 cut(s)	58, 209, 246, 294, 357, 434, 1236, 1400
DpnI	GATC	7 cut(s)	128, 204, 984, 1017, 1030, 1089, 1234
DpnII	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
DrdI	GACNNNNNNGTC	1 cut(s)	802
DseDI	GACNNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	3 cut(s)	155, 1098, 1275
EarI	CTCTTC	3 cut(s)	155, 1098, 1275
Eco130I	CCWWGG	2 cut(s)	631, 1091
Eco31I	GGTCTC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	1398
Eco81I	CCTNAGG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	655, 726
EcoT14I	CCWWGG	2 cut(s)	631, 1091
EcoT22I	ATGCAT	1 cut(s)	1134
ErhI	CCWWGG	2 cut(s)	631, 1091
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	4 cut(s)	337, 554, 974, 1349
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	2 cut(s)	752, 790
FatI	CATG	4 cut(s)	333, 550, 970, 1345
FblI	GTMKAC	3 cut(s)	611, 764, 1194
Fnu4HI	GCNGC	5 cut(s)	396, 399, 940, 1383, 1395
FokI	GGATG	5 cut(s)	321, 743, 869, 1109, 1130
Fsp4HI	GCNGC	5 cut(s)	396, 399, 940, 1383, 1395
GlaI	GCGC	2 cut(s)	169, 1398
GluI	GCNGC	5 cut(s)	396, 399, 940, 1383, 1395
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	2 cut(s)	33, 639
HaeII	RGCGCY	1 cut(s)	1400
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	1062, 1364
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	2 cut(s)	170, 1399
Hin1II	CATG	4 cut(s)	337, 554, 974, 1349
Hin6I	GCGC	2 cut(s)	168, 1397
HinP1I	GCGC	2 cut(s)	168, 1397
HinfI	GANTC	7 cut(s)	53, 81, 538, 584, 1072, 1160, 1211
HpaII	CCGG	2 cut(s)	1062, 1364
HphI	GGTGA	3 cut(s)	94, 977, 1220
Hpy166II	GTNNAC	5 cut(s)	447, 612, 765, 1195, 1351
Hpy188I	TCNGA	5 cut(s)	61, 86, 118, 210, 437
Hpy188III	TCNNGA	6 cut(s)	50, 130, 356, 1067, 1076, 1164
Hpy8I	GTNNAC	5 cut(s)	447, 612, 765, 1195, 1351
HpyAV	CCTTC	3 cut(s)	502, 889, 1168
HpyCH4III	ACNGT	4 cut(s)	609, 639, 665, 1139
HpyCH4IV	ACGT	2 cut(s)	555, 741
HpyF10VI	GCNNNNNNNGC	5 cut(s)	407, 424, 1129, 1253, 1391
HpyF3I	CTNAG	8 cut(s)	58, 209, 246, 294, 357, 434, 1236, 1400
HpySE526I	ACGT	2 cut(s)	555, 741
Hsp92II	CATG	4 cut(s)	337, 554, 974, 1349
HspAI	GCGC	2 cut(s)	168, 1397
Kzo9I	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
LmnI	GCTCC	3 cut(s)	165, 901, 1252
Lsp1109I	GCAGC	5 cut(s)	382, 410, 951, 1394, 1406
MaeII	ACGT	2 cut(s)	555, 741
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	7 cut(s)	128, 204, 984, 1017, 1030, 1089, 1234
MboI	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
MfeI	CAATTG	2 cut(s)	573, 1293
MflI	RGATCY	1 cut(s)	1232
MhlI	GDGCHC	1 cut(s)	1353
MluCI	AATT	9 cut(s)	95, 287, 463, 573, 703, 890, 1293, 1324, 1389
MlyI	GAGTC	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	1134
MroXI	GAANNNNTTC	2 cut(s)	375, 1324
MseI	TTAA	2 cut(s)	290, 962
MslI	CAYNNNNRTG	2 cut(s)	990, 993
MspI	CCGG	2 cut(s)	1062, 1364
MspR9I	CCNGG	3 cut(s)	657, 728, 1062
MunI	CAATTG	2 cut(s)	573, 1293
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	2 cut(s)	657, 728
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	5 cut(s)	407, 424, 1129, 1253, 1391
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
NlaIII	CATG	4 cut(s)	337, 554, 974, 1349
NlaIV	GGNNCC	3 cut(s)	951, 1152, 1302
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	1349
PciI	ACATGT	1 cut(s)	1345
PctI	GAATGC	1 cut(s)	368
PdmI	GAANNNNTTC	2 cut(s)	375, 1324
PfeI	GAWTC	6 cut(s)	81, 538, 584, 1072, 1160, 1211
PkrI	GCNGC	5 cut(s)	397, 400, 941, 1384, 1396
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PscI	ACATGT	1 cut(s)	1345
Psp6I	CCWGG	2 cut(s)	655, 726
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	655, 726
PspN4I	GGNNCC	3 cut(s)	951, 1152, 1302
PsrI	GAACNNNNNNTAC	2 cut(s)	748, 780
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	1232
RsaI	GTAC	3 cut(s)	392, 847, 1113
RsaNI	GTAC	3 cut(s)	391, 846, 1112
RseI	CAYNNNNRTG	2 cut(s)	990, 993
SaqAI	TTAA	2 cut(s)	290, 962
SatI	GCNGC	5 cut(s)	396, 399, 940, 1383, 1395
Sau3AI	GATC	7 cut(s)	126, 202, 982, 1015, 1028, 1087, 1232
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	657, 728, 1062
SduI	GDGCHC	1 cut(s)	1353
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	2 cut(s)	990, 993
Sse9I	AATT	9 cut(s)	95, 287, 463, 573, 703, 890, 1293, 1324, 1389
SsiI	CCGC	3 cut(s)	170, 863, 902
StyD4I	CCNGG	3 cut(s)	655, 726, 1060
StyI	CCWWGG	2 cut(s)	631, 1091
TaaI	ACNGT	4 cut(s)	609, 639, 665, 1139
TaiI	ACGT	2 cut(s)	558, 744
TaqI	TCGA	3 cut(s)	830, 1163, 1387
TasI	AATT	9 cut(s)	95, 287, 463, 573, 703, 890, 1293, 1324, 1389
TatI	WGTACW	1 cut(s)	845
TfiI	GAWTC	6 cut(s)	81, 538, 584, 1072, 1160, 1211
Tru1I	TTAA	2 cut(s)	290, 962
Tru9I	TTAA	2 cut(s)	290, 962
TscAI	CASTG	2 cut(s)	644, 670
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	5 cut(s)	395, 398, 939, 1382, 1394
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	9 cut(s)	17, 300, 548, 804, 873, 1113, 1173, 1187, 1389
TspRI	CASTG	2 cut(s)	644, 670
VneI	GTGCAC	1 cut(s)	1349
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	95, 463, 890
XceI	RCATGY	1 cut(s)	1349
XmiI	GTMKAC	3 cut(s)	611, 764, 1194
XmnI	GAANNNNTTC	2 cut(s)	375, 1324
Zsp2I	ATGCAT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.