Rroxscaffold_7G00205210

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003526
Physical Location & Seq
Forward (+)
54767382 .. 54768564
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205210.1

Sequence Viewer

Length: 633 bp
ATGATAGAAAGCGGGTTGTTCCAGGAAGTACGGTTGCATGATGCTTCTGTTTCCTCTGTTACAGAACTGGTTGTAGCTTTCGCTGTTTCCAATGTTGAGAGTCCAGAAAGGCAAGCTGGTCAAAAGTCTGCCACTCCTTCAGCTCCATATAGGCCAACTCCTTCAGCTCCAGAGTGGCCAACTGATCCAACACCCACTCCTTCGGCTCCCGAATGGCCGACTGGTCCAAGACCTGCCACTCCTTCATCTCCTAACTGTTCATCTGATCAAACACTTGCCACTCCTTCAGCTGCCAATGTTATATATTCTGAACCAACTTTAAAAATCAACGAGTCGAGTGAGGCAGCAGAAGATAGTGACAATGTTAAGGAAGAAGGAAGTGGAAATGATACTGGATCAAGTGAAGAGGTAGAAGTGACGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGCTCAACCCAACTTGGGCTTCACAAGCTTCATTGAGGGACAACAGTGGAAGAGACCAAGATGTCCAGGGTAGCTATCTAGCTGTTTTGAGTTTGAAACTGGTTCTGAACTCTTTATTAGAAAATCAGGTTGCCAAGCAGAAAGTTCATTGCTCTGTTTTACTTGCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

210

Amino Acids

22.18

Weight (kDa)

4.38

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 179, 403
AcoI YGGCCR 2 cut(s) 176, 215
AcuI CTGAAG 3 cut(s) 123, 147, 270
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 475
AgsI TTSAA 1 cut(s) 556
AjnI CCWGG 3 cut(s) 21, 452, 525
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 8 cut(s) 77, 116, 143, 167, 290, 488, 534, 542
AluI AGCT 8 cut(s) 77, 116, 143, 167, 290, 488, 534, 542
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 2 cut(s) 179, 403
AoxI GGCC 3 cut(s) 152, 176, 215
ApeKI GCWGC 2 cut(s) 290, 344
AspS9I GGNCC 2 cut(s) 224, 449
AvaII GGWCC 2 cut(s) 224, 449
BalI TGGCCA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 277, 356
BccI CCATC 1 cut(s) 450
BciT130I CCWGG 3 cut(s) 23, 454, 527
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 2 cut(s) 291, 345
BlsI GCNGC 2 cut(s) 292, 346
Bme1390I CCNGG 3 cut(s) 23, 454, 527
Bme18I GGWCC 2 cut(s) 224, 449
BmgT120I GGNCC 2 cut(s) 224, 449
BmiI GGNNCC 3 cut(s) 207, 450, 451
BmrFI CCNGG 3 cut(s) 23, 454, 527
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 452, 453, 526
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 4 cut(s) 72, 226, 397, 564
Bse3DI GCAATG 2 cut(s) 433, 607
BseBI CCWGG 3 cut(s) 23, 454, 527
BseDI CCNNGG 3 cut(s) 452, 453, 526
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 433, 607
BseNI ACTGG 4 cut(s) 72, 226, 397, 564
BseXI GCAGC 2 cut(s) 277, 356
BshFI GGCC 3 cut(s) 154, 178, 217
BsiHKAI GWGCWC 1 cut(s) 465
BslFI GGGAC 2 cut(s) 462, 512
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 2 cut(s) 462, 512
BsnI GGCC 3 cut(s) 154, 178, 217
Bso31I GGTCTC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 3 cut(s) 184, 265, 395
BspACI CCGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 154, 178, 217
BspLI GGNNCC 3 cut(s) 207, 450, 451
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 2 cut(s) 179, 403
BspTNI GGTCTC 1 cut(s) 507
BsrDI GCAATG 2 cut(s) 433, 607
BsrI ACTGG 4 cut(s) 72, 226, 397, 564
BssECI CCNNGG 3 cut(s) 452, 453, 526
BssMI GATC 3 cut(s) 184, 265, 395
Bst2UI CCWGG 3 cut(s) 23, 454, 527
Bst4CI ACNGT 3 cut(s) 33, 257, 506
Bst6I CTCTTC 2 cut(s) 399, 505
BstC8I GCNNGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 187, 268, 398
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 184, 265, 395
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 3 cut(s) 23, 454, 527
BstSCI CCNGG 3 cut(s) 21, 452, 525
BstV1I GCAGC 2 cut(s) 277, 356
BsuRI GGCC 3 cut(s) 154, 178, 217
BtsIMutI CAGTG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 224, 449
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 38
CviQI GTAC 1 cut(s) 29
DpnI GATC 3 cut(s) 186, 267, 397
DpnII GATC 3 cut(s) 184, 265, 395
DraI TTTAAA 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
EaeI YGGCCR 2 cut(s) 176, 215
Eam1104I CTCTTC 2 cut(s) 399, 505
EarI CTCTTC 2 cut(s) 399, 505
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 224, 449
Eco57I CTGAAG 3 cut(s) 123, 147, 270
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 21, 452, 525
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 39, 148, 150, 302, 304, 631
FaqI GGGAC 2 cut(s) 462, 512
FatI CATG 1 cut(s) 37
FauI CCCGC 1 cut(s) 5
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 291, 345
Fsp4HI GCNGC 2 cut(s) 291, 345
FspBI CTAG 1 cut(s) 539
GluI GCNGC 2 cut(s) 291, 345
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 154, 178, 217
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 2 cut(s) 100, 332
Hpy188I TCNGA 3 cut(s) 265, 310, 567
Hpy188III TCNNGA 3 cut(s) 104, 170, 209
HpyAV CCTTC 7 cut(s) 147, 171, 210, 252, 294, 368, 428
HpyCH4III ACNGT 3 cut(s) 33, 257, 506
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
Hsp92II CATG 1 cut(s) 41
KflI GGGWCCC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 184, 265, 395
LmnI GCTCC 3 cut(s) 148, 172, 211
Lsp1109I GCAGC 2 cut(s) 277, 356
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 539
MaeIII GTNAC 3 cut(s) 58, 356, 415
MalI GATC 3 cut(s) 186, 267, 397
MboI GATC 3 cut(s) 184, 265, 395
MboII GAAGA 4 cut(s) 362, 383, 416, 522
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 109, 341
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 64, 334, 400, 489
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 2 cut(s) 320, 366
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 3 cut(s) 23, 454, 527
MvaI CCWGG 3 cut(s) 23, 454, 527
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 3 cut(s) 184, 265, 395
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 3 cut(s) 207, 450, 451
NmuCI GTSAC 2 cut(s) 356, 415
PasI CCCWGGG 1 cut(s) 453
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 2 cut(s) 292, 346
PleI GAGTC 2 cut(s) 108, 340
PpsI GAGTC 2 cut(s) 108, 340
PpuMI RGGWCCY 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 3 cut(s) 21, 452, 525
PspGI CCWGG 3 cut(s) 21, 452, 525
PspN4I GGNNCC 3 cut(s) 207, 450, 451
PspPI GGNCC 2 cut(s) 224, 449
PspPPI RGGWCCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 320, 366
SatI GCNGC 2 cut(s) 291, 345
Sau3AI GATC 3 cut(s) 184, 265, 395
Sau96I GGNCC 2 cut(s) 224, 449
SchI GAGTC 2 cut(s) 109, 341
ScrFI CCNGG 3 cut(s) 23, 454, 527
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 2 cut(s) 224, 449
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 3 cut(s) 21, 452, 525
TaaI ACNGT 3 cut(s) 33, 257, 506
TaqI TCGA 1 cut(s) 335
Tru1I TTAA 2 cut(s) 320, 366
Tru9I TTAA 2 cut(s) 320, 366
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 356, 415
TseI GCWGC 2 cut(s) 290, 344
Tsp45I GTSAC 2 cut(s) 356, 415
TspDTI ATGAA 4 cut(s) 234, 249, 480, 596
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 224, 449
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.