Rroxscaffold_2G00106580

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011335
Physical Location & Seq
Forward (+)
30159151 .. 30165203
6053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106580.1

Sequence Viewer

Length: 1044 bp
ATGGAAGAAGAGTCAGTGGAGACAAGGGGGCAATCAGAGGTGGAGAAGGTGATGAGTGAAGTACACTTGGGGTGCCCACCTGGTTTCTCTGGCCCTCATATTTCCTACTTCACCTTCTCCATCCCACAACCTGGACCTGGATTGATTGAGCCCAGAAGCTCCAATGACGTTTCCCAAGTTGAAGAAGCAACTACTTCCATTTCCACACAGCAAAACATAAGTTTTGACGAGGATGGCGATCTCATTCTTCCTAGACGAAAAACCAAATTATCTAATCAAAGCTATAGCATGACCATCCAGCATAGTATCACATCAACACTACCAAGTGTTGGTTTGCAGGTGTGGAGAGCAGAACTCGTCTTATCGGATTTTTTATTGCATAAGATGTTTACATCATCCGAGCTTGATGGAGTTGTATCACTAGAACTTGGTGCTGGTACAGGGTTGGTGGGTATACTACTAGCACATGTTGCTAAAACAGTGTTTATAACAGACCATGGGAATGAGATCCTTGACAACTGTGCTAAAAATGTTGAGCTTAATCCTGAACTCATCAGTCCTGGAACTACAGTCTATGTACGTGAACTTGATTGGACGAATCCCTGGCCCCCAAGATTAACCATAGAAGAATCCTCCTTGGGTAAAACTAAAAGGTATTCTTGGACCTTTTCAGAAATTGAAATAGCCCATGAAGCTTCTTTGCTTGTAGCTGCAGATGTAATCTACAGTGATGACTTGACAGATGCATTTTTCAGCACTTTAGAGAGACTAATGTCTCTCGGTTCCGAAAAGGTGTTATTCTTAGCTTTGGAAAAACGCTACAACTTTAGTCTTCATGATCTTGATGTGGTTGCAAATGGTTATTTACATTTCCGAAGTTATTTGCAGTCGGGAGGGGATTGTGAAGGCCTGAAATGTGGTCCAATGCCTTGCTTTGTGGGCAAATGCATAGACATTACAGAGATTCCGCAATATTTGAAAGAGTATGTCAGAGGAAGTGATGTTGAGATTTGGGAAATTAAGTATAGCAAAAGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

347

Amino Acids

38.71

Weight (kDa)

4.84

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 105 - 206 3.5e-17 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 2 cut(s) 131, 329
AccI GTMKAC 1 cut(s) 454
AciI CCGC 1 cut(s) 968
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 1037
AfaI GTAC 3 cut(s) 63, 439, 579
AfiI CCNNNNNNNGG 3 cut(s) 131, 137, 329
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 3 cut(s) 182, 680, 979
AjnI CCWGG 5 cut(s) 79, 130, 136, 559, 602
AluBI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
AluI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
Alw26I GTCTC 3 cut(s) 14, 760, 780
AlwI GGATC 1 cut(s) 502
AoxI GGCC 3 cut(s) 91, 605, 907
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 1 cut(s) 1037
AspS9I GGNCC 5 cut(s) 92, 134, 606, 663, 920
AsuHPI GGTGA 2 cut(s) 61, 103
AvaII GGWCC 3 cut(s) 134, 663, 920
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 824
BbvI GCAGC 1 cut(s) 697
BccI CCATC 4 cut(s) 128, 227, 302, 401
BciT130I CCWGG 5 cut(s) 81, 132, 138, 561, 604
BcoDI GTCTC 3 cut(s) 14, 760, 780
BfaI CTAG 3 cut(s) 252, 422, 461
BfmI CTRYAG 4 cut(s) 283, 567, 711, 724
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
Bme1390I CCNGG 5 cut(s) 81, 132, 138, 561, 604
Bme18I GGWCC 3 cut(s) 134, 663, 920
BmgT120I GGNCC 5 cut(s) 92, 134, 606, 663, 920
BmiI GGNNCC 3 cut(s) 74, 608, 784
BmrFI CCNGG 5 cut(s) 81, 132, 138, 561, 604
BmsI GCATC 1 cut(s) 733
BoxI GACNNNNGTC 1 cut(s) 772
BpiI GAAGAC 1 cut(s) 824
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BsaAI YACGTR 1 cut(s) 581
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 496, 602, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 137, 329
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 5 cut(s) 81, 132, 138, 561, 604
BseDI CCNNGG 3 cut(s) 496, 602, 636
BseGI GGATG 4 cut(s) 120, 238, 294, 395
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 131, 137, 329
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 697
BshFI GGCC 3 cut(s) 93, 607, 909
BshNI GGYRCC 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 131, 137, 329
BsmAI GTCTC 3 cut(s) 14, 760, 780
BsnI GGCC 3 cut(s) 93, 607, 909
Bsp1286I GDGCHC 2 cut(s) 77, 153
Bsp143I GATC 3 cut(s) 238, 507, 838
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 968
BspANI GGCC 3 cut(s) 93, 607, 909
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 3 cut(s) 74, 608, 784
BspMAI CTGCAG 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 496, 602, 636
BssMI GATC 3 cut(s) 238, 507, 838
BssNAI GTATAC 1 cut(s) 455
BssT1I CCWWGG 2 cut(s) 496, 636
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 5 cut(s) 81, 132, 138, 561, 604
Bst4CI ACNGT 4 cut(s) 481, 521, 571, 728
Bst6I CTCTTC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 581
BstDEI CTNAG 1 cut(s) 802
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 4 cut(s) 120, 238, 294, 395
BstKTI GATC 3 cut(s) 241, 510, 841
BstMAI GTCTC 3 cut(s) 14, 760, 780
BstMBI GATC 3 cut(s) 238, 507, 838
BstMWI GCNNNNNNNGC 3 cut(s) 470, 692, 939
BstNI CCWGG 5 cut(s) 81, 132, 138, 561, 604
BstNSI RCATGY 1 cut(s) 470
BstPAI GACNNNNGTC 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 79, 130, 136, 559, 602
BstSFI CTRYAG 4 cut(s) 283, 567, 711, 724
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
BstZ17I GTATAC 1 cut(s) 455
BsuRI GGCC 3 cut(s) 93, 607, 909
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 4 cut(s) 120, 238, 294, 395
BtsIMutI CAGTG 3 cut(s) 21, 486, 733
BveI ACCTGC 1 cut(s) 328
CciI TCATGA 1 cut(s) 835
Cfr13I GGNCC 5 cut(s) 92, 134, 606, 663, 920
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 3 cut(s) 62, 438, 578
CviAII CATG 5 cut(s) 289, 467, 497, 689, 836
CviQI GTAC 3 cut(s) 62, 438, 578
DdeI CTNAG 1 cut(s) 802
DpnI GATC 3 cut(s) 240, 509, 840
DpnII GATC 3 cut(s) 238, 507, 838
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 496, 636
Eco147I AGGCCT 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 134, 663, 920
EcoRII CCWGG 5 cut(s) 79, 130, 136, 559, 602
EcoT14I CCWWGG 2 cut(s) 496, 636
EcoT22I ATGCAT 2 cut(s) 748, 950
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 496, 636
FaeI CATG 5 cut(s) 292, 470, 500, 692, 839
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FatI CATG 5 cut(s) 288, 466, 496, 688, 835
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 4 cut(s) 107, 245, 281, 382
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 711
FspBI CTAG 3 cut(s) 252, 422, 461
GluI GCNGC 1 cut(s) 711
HaeIII GGCC 3 cut(s) 93, 607, 909
Hin1II CATG 5 cut(s) 292, 470, 500, 692, 839
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 4 cut(s) 11, 598, 629, 964
HphI GGTGA 2 cut(s) 61, 103
Hpy166II GTNNAC 4 cut(s) 64, 390, 455, 584
Hpy188I TCNGA 7 cut(s) 37, 367, 400, 673, 787, 875, 992
Hpy188III TCNNGA 4 cut(s) 545, 836, 842, 891
Hpy8I GTNNAC 4 cut(s) 64, 390, 455, 584
HpyAV CCTTC 3 cut(s) 40, 124, 899
HpyCH4III ACNGT 4 cut(s) 481, 521, 571, 728
HpyCH4IV ACGT 2 cut(s) 168, 580
HpyCH4V TGCA 7 cut(s) 337, 379, 713, 746, 854, 886, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 692, 939
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 2 cut(s) 168, 580
Hsp92II CATG 5 cut(s) 292, 470, 500, 692, 839
Kzo9I GATC 3 cut(s) 238, 507, 838
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 1 cut(s) 733
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 3 cut(s) 252, 422, 461
MaeII ACGT 2 cut(s) 168, 580
MalI GATC 3 cut(s) 240, 509, 840
MboI GATC 3 cut(s) 238, 507, 838
MboII GAAGA 6 cut(s) 17, 20, 194, 239, 638, 824
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 2 cut(s) 77, 153
MluCI AATT 4 cut(s) 266, 675, 1017, 1037
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 6 cut(s) 31, 105, 223, 643, 887, 986
Mph1103I ATGCAT 2 cut(s) 748, 950
MseI TTAA 3 cut(s) 540, 617, 1020
MslI CAYNNNNRTG 1 cut(s) 501
MspR9I CCNGG 5 cut(s) 81, 132, 138, 561, 604
MvaI CCWGG 5 cut(s) 81, 132, 138, 561, 604
MwoI GCNNNNNNNGC 3 cut(s) 470, 692, 939
NcoI CCATGG 1 cut(s) 496
NdeII GATC 3 cut(s) 238, 507, 838
NlaIII CATG 5 cut(s) 292, 470, 500, 692, 839
NlaIV GGNNCC 3 cut(s) 74, 608, 784
NsiI ATGCAT 2 cut(s) 748, 950
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 835
PaqCI CACCTGC 1 cut(s) 328
PceI AGGCCT 1 cut(s) 909
PciI ACATGT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 598, 629, 964
PflMI CCANNNNNTGG 2 cut(s) 131, 329
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 1 cut(s) 712
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 581
PscI ACATGT 1 cut(s) 466
PshAI GACNNNNGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 5 cut(s) 79, 130, 136, 559, 602
PspGI CCWGG 5 cut(s) 79, 130, 136, 559, 602
PspN4I GGNNCC 3 cut(s) 74, 608, 784
PspPI GGNCC 5 cut(s) 92, 134, 606, 663, 920
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 3 cut(s) 63, 439, 579
RsaNI GTAC 3 cut(s) 62, 438, 578
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 3 cut(s) 540, 617, 1020
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 3 cut(s) 238, 507, 838
Sau96I GGNCC 5 cut(s) 92, 134, 606, 663, 920
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 5 cut(s) 81, 132, 138, 561, 604
SduI GDGCHC 2 cut(s) 77, 153
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 4 cut(s) 283, 567, 711, 724
SinI GGWCC 3 cut(s) 134, 663, 920
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 4 cut(s) 266, 675, 1017, 1037
SseBI AGGCCT 1 cut(s) 909
SsiI CCGC 1 cut(s) 968
SspI AATATT 1 cut(s) 974
SspMI CTAG 3 cut(s) 252, 422, 461
StuI AGGCCT 1 cut(s) 909
StyD4I CCNGG 5 cut(s) 79, 130, 136, 559, 602
StyI CCWWGG 2 cut(s) 496, 636
TaaI ACNGT 4 cut(s) 481, 521, 571, 728
TaiI ACGT 2 cut(s) 171, 583
TasI AATT 4 cut(s) 266, 675, 1017, 1037
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 3 cut(s) 598, 629, 964
Tru1I TTAA 3 cut(s) 540, 617, 1020
Tru9I TTAA 3 cut(s) 540, 617, 1020
TscAI CASTG 3 cut(s) 21, 486, 733
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 2 cut(s) 705, 824
TspRI CASTG 3 cut(s) 21, 486, 733
Van91I CCANNNNNTGG 2 cut(s) 131, 329
VpaK11BI GGWCC 3 cut(s) 134, 663, 920
XapI RAATTY 1 cut(s) 1037
XceI RCATGY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 3 cut(s) 252, 422, 461
Zsp2I ATGCAT 2 cut(s) 748, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.