Prupe.3G070300_v2.0.a1

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011335
Physical Location & Seq
Forward (+)
5055813 .. 5058756
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G070300.1

Sequence Viewer

Length: 984 bp
ATGGAGAAAGGGTCTTTGGAGACGATGGGGCAAATGAACTGCGGAGATTCACAGGAGGAAGAGCAGGTGATGAGTGAAGTACACTTGGGCTGCCCATCTGGTTTCTCTGGACCCCACATTTCCCGCTTCACCTTCTCCATCCCGACTGAACTTGAGCCCAGAAGATACAATGGGACTTCCCAAGTTGAACCTGCTTCCACAAATCAAATGATTAGCTTGGACGAGGATGGTGATCTTCTTCTCCCTAGACGCAACAAATTATCTACTCAGAGTTCTAGCGTGAGCATCCAGCATAATATCACATCATCAATTCCAAGCGTCGGTTTGCAAGTGTGGAGGGCAGAACTTCTATTATCCGATTTTTTGCTGCATAAGATGTTTACATCATCTGAACTTGATGGAACTGTCGCATTAGAACTTGGTGCTGGTACAGACCATGGGAATGAGGTCCTTGACAACTGTGCTAAGAATGTCGACCTCAATTCTGAACTGTTCAGTCATCGAGCTACAGTTCATGTACGTGAACTTGATTGGATGAAACCCTGGCCCCCAAGAATGACCCTAGAAGAATCCTCCCTGGGTAAAAGGTATTCTTGGACCTTTTCAGAAGTCGAAGCAGCCCAGGAAGCTTCTTTGCTTGTAGCTGCGGATGTAATCTACAGTGATGATCTAACAGATGCGTTTTTCAGCACTTTACAGAGATTAATGTCTTCGGGTTCAGAAAAGGTGTTGTACTTAGCATTGGAAAAACGCTACAACTTCAGTGTTGATGATCTCAATGTTGTTGCAAATGGTTACTCGCATTTCCGAAGTTTTTTGCGGTTAGAGGGGGATGCAGATTCTGAAGCCCTTGAATGTGGTTCAATGCCTTGCTTTGTGGGAAAATGCATAGACATTACACAGATTCCTCAGTATGTGAGGGAGTATGATAGAGGAACTGATGTTGAGCTTTGGCAGATTGAGTATAACAAAACAAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

328

Amino Acids

36.66

Weight (kDa)

4.66

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 982
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 2 cut(s) 55, 199
AccI GTMKAC 1 cut(s) 474
AciI CCGC 4 cut(s) 42, 124, 647, 820
AcuI CTGAAG 2 cut(s) 745, 864
AfaI GTAC 4 cut(s) 81, 430, 519, 734
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 3 cut(s) 188, 854, 864
AjnI CCWGG 3 cut(s) 542, 576, 621
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 5 cut(s) 216, 506, 629, 644, 949
AluI AGCT 5 cut(s) 216, 506, 629, 644, 949
Alw26I GTCTC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 4 cut(s) 90, 367, 617, 644
AseI ATTAAT 1 cut(s) 704
AspS9I GGNCC 4 cut(s) 110, 448, 546, 597
AsuHPI GGTGA 3 cut(s) 79, 121, 242
AvaII GGWCC 3 cut(s) 110, 448, 597
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 77, 354, 629, 631
BccI CCATC 5 cut(s) 19, 103, 146, 221, 392
BciT130I CCWGG 3 cut(s) 544, 578, 623
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 3 cut(s) 246, 276, 563
BfmI CTRYAG 2 cut(s) 507, 658
BfuAI ACCTGC 2 cut(s) 55, 199
BisI GCNGC 4 cut(s) 91, 368, 618, 645
BlsI GCNGC 4 cut(s) 92, 369, 619, 646
Bme1390I CCNGG 3 cut(s) 544, 578, 623
Bme18I GGWCC 3 cut(s) 110, 448, 597
BmgT120I GGNCC 4 cut(s) 110, 448, 546, 597
BmiI GGNNCC 2 cut(s) 112, 548
BmrFI CCNGG 3 cut(s) 544, 578, 623
BmsI GCATC 3 cut(s) 294, 667, 823
BpiI GAAGAC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 5 cut(s) 436, 542, 576, 577, 621
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 3 cut(s) 544, 578, 623
BseDI CCNNGG 5 cut(s) 436, 542, 576, 577, 621
BseGI GGATG 6 cut(s) 138, 232, 285, 540, 655, 838
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 281, 923
BseXI GCAGC 4 cut(s) 77, 354, 629, 631
BshFI GGCC 1 cut(s) 547
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 232, 667, 772
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 4 cut(s) 42, 124, 647, 820
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 2 cut(s) 280, 922
BspLI GGNNCC 2 cut(s) 112, 548
BspMI ACCTGC 2 cut(s) 55, 199
BspQI GCTCTTC 1 cut(s) 54
BssECI CCNNGG 5 cut(s) 436, 542, 576, 577, 621
BssMI GATC 3 cut(s) 232, 667, 772
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 3 cut(s) 544, 578, 623
Bst4CI ACNGT 5 cut(s) 406, 461, 492, 511, 662
Bst6I CTCTTC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 521
BstDEI CTNAG 4 cut(s) 267, 465, 736, 909
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 6 cut(s) 138, 232, 285, 540, 655, 838
BstKTI GATC 3 cut(s) 235, 670, 775
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 232, 667, 772
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 3 cut(s) 544, 578, 623
BstSCI CCNGG 3 cut(s) 542, 576, 621
BstSFI CTRYAG 2 cut(s) 507, 658
BstV1I GCAGC 4 cut(s) 77, 354, 629, 631
BstV2I GAAGAC 1 cut(s) 702
BsuRI GGCC 1 cut(s) 547
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 6 cut(s) 138, 232, 285, 540, 655, 838
BtsIMutI CAGTG 2 cut(s) 667, 769
BveI ACCTGC 2 cut(s) 55, 199
CaiI CAGNNNCTG 1 cut(s) 842
Cfr13I GGNCC 4 cut(s) 110, 448, 546, 597
CseI GACGC 2 cut(s) 258, 307
Csp6I GTAC 4 cut(s) 80, 429, 518, 733
CviAII CATG 2 cut(s) 437, 515
CviQI GTAC 4 cut(s) 80, 429, 518, 733
DdeI CTNAG 4 cut(s) 267, 465, 736, 909
DpnI GATC 3 cut(s) 234, 669, 774
DpnII GATC 3 cut(s) 232, 667, 772
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 3 cut(s) 110, 448, 597
Eco57I CTGAAG 2 cut(s) 745, 864
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 3 cut(s) 542, 576, 621
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 890
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 2 cut(s) 440, 518
FaiI YATR 9 cut(s) 294, 372, 438, 516, 890, 915, 927, 966, 982
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 436, 514
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 4 cut(s) 91, 368, 618, 645
FokI GGATG 6 cut(s) 125, 239, 272, 547, 662, 845
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 4 cut(s) 91, 368, 618, 645
FspBI CTAG 3 cut(s) 246, 276, 563
GluI GCNGC 4 cut(s) 91, 368, 618, 645
HaeIII GGCC 1 cut(s) 547
HgaI GACGC 2 cut(s) 258, 307
Hin1II CATG 2 cut(s) 440, 518
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 4 cut(s) 47, 569, 839, 904
HphI GGTGA 3 cut(s) 79, 121, 242
Hpy166II GTNNAC 4 cut(s) 82, 381, 475, 524
Hpy188I TCNGA 8 cut(s) 270, 358, 391, 487, 607, 721, 809, 844
Hpy188III TCNNGA 2 cut(s) 108, 142
Hpy8I GTNNAC 4 cut(s) 82, 381, 475, 524
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 5 cut(s) 406, 461, 492, 511, 662
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 5 cut(s) 328, 370, 788, 836, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 4 cut(s) 267, 465, 736, 909
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 2 cut(s) 440, 518
Kzo9I GATC 3 cut(s) 232, 667, 772
LguI GCTCTTC 1 cut(s) 54
Lsp1109I GCAGC 4 cut(s) 77, 354, 629, 631
LweI GCATC 3 cut(s) 294, 667, 823
MaeI CTAG 3 cut(s) 246, 276, 563
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 1 cut(s) 794
MalI GATC 3 cut(s) 234, 669, 774
MboI GATC 3 cut(s) 232, 667, 772
MboII GAAGA 6 cut(s) 71, 174, 227, 230, 578, 702
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 4 cut(s) 257, 309, 481, 977
Mph1103I ATGCAT 1 cut(s) 890
MseI TTAA 1 cut(s) 704
MslI CAYNNNNRTG 2 cut(s) 441, 519
MspR9I CCNGG 3 cut(s) 544, 578, 623
MvaI CCWGG 3 cut(s) 544, 578, 623
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 436
NdeII GATC 3 cut(s) 232, 667, 772
NlaIII CATG 2 cut(s) 440, 518
NlaIV GGNNCC 2 cut(s) 112, 548
NsiI ATGCAT 1 cut(s) 890
PaqCI CACCTGC 1 cut(s) 55
PasI CCCWGGG 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 4 cut(s) 47, 569, 839, 904
PkrI GCNGC 4 cut(s) 92, 369, 619, 646
Ppu21I YACGTR 1 cut(s) 521
PpuMI RGGWCCY 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 704
PsiI TTATAA 1 cut(s) 982
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 3 cut(s) 542, 576, 621
PspGI CCWGG 3 cut(s) 542, 576, 621
PspN4I GGNNCC 2 cut(s) 112, 548
PspPI GGNCC 4 cut(s) 110, 448, 546, 597
PspPPI RGGWCCY 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 842
RsaI GTAC 4 cut(s) 81, 430, 519, 734
RsaNI GTAC 4 cut(s) 80, 429, 518, 733
RseI CAYNNNNRTG 2 cut(s) 441, 519
SalI GTCGAC 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 704
SatI GCNGC 4 cut(s) 91, 368, 618, 645
Sau3AI GATC 3 cut(s) 232, 667, 772
Sau96I GGNCC 4 cut(s) 110, 448, 546, 597
ScrFI CCNGG 3 cut(s) 544, 578, 623
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 3 cut(s) 294, 667, 823
SfcI CTRYAG 2 cut(s) 507, 658
SinI GGWCC 3 cut(s) 110, 448, 597
SmiMI CAYNNNNRTG 2 cut(s) 441, 519
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 257, 309, 481, 977
SsiI CCGC 4 cut(s) 42, 124, 647, 820
SspMI CTAG 3 cut(s) 246, 276, 563
StyD4I CCNGG 3 cut(s) 542, 576, 621
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 5 cut(s) 406, 461, 492, 511, 662
TaiI ACGT 1 cut(s) 523
TaqI TCGA 3 cut(s) 474, 502, 612
TasI AATT 4 cut(s) 257, 309, 481, 977
TatI WGTACW 2 cut(s) 79, 732
TfiI GAWTC 4 cut(s) 47, 569, 839, 904
Tru1I TTAA 1 cut(s) 704
Tru9I TTAA 1 cut(s) 704
TscAI CASTG 2 cut(s) 667, 769
TseI GCWGC 4 cut(s) 90, 367, 617, 644
TspDTI ATGAA 3 cut(s) 50, 503, 551
TspRI CASTG 2 cut(s) 667, 769
VpaK11BI GGWCC 3 cut(s) 110, 448, 597
VspI ATTAAT 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 3 cut(s) 246, 276, 563
Zsp2I ATGCAT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.