Rh2DG417500

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011335
Physical Location & Seq
Reverse (-)
60613525 .. 60621128
7604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG417500.1

Sequence Viewer

Length: 918 bp
ATGGAAGAAGAGTCAGTGGAGACAAGGGGGCAATCAGAGGTGGAGAAGGTGATGAGTGAAGTACACTTGGGGTGCCCACCTGGTTTCTCTGGCCCTCATATTTCCTACTTCACCTTCTCCATCCCACAACCTTGGCCTGGATTGATTGAGCCCAGAAGCTCCGATGACGTTTCCCAAGTTGAAGAAGCAACTACTTCCATTTCCACGCAGCAAAACATAAGTTTTGACGAGGATGGCGATCTCATGCTTCCTAGACGAAAAACCAAATTATCTAATCAAAGCTATAGCGTGACCATCCAGCATAGTATCACATCAACACTACCAAGTGTTGGTTTGCAGGTGTGGAGAGCAGAACTCGTCTTATCTGATTTTTTATTGCATAAGATGTTTACATCATCCGAGCTTGATGGAGTTGTATCACTAGAACTTGGTGCTGGTACAGGGTTGGTGGGTATACTACTAGCACGTGTTGCTAAAACAGTGTTTATAACAGACCATGGGAATGAGATCCTTGACAACTGTGCTAAAAATGTTGAGCTTAATCCTGAACTCATCAGTCCTGGAACTACAGTCTATGTACGTGAACTTGATTGGATGAATCCCTGGCCCCCAAGATTAACCATAGAAGAATCCTCCTTGGGTAAAACTAAAAGGTATTCTTGGACCTTTTCAGAAATTGAAATAGCCCATGAAGCTTCTTTGCTTGTAGCTGCAGATTTAATCTACAGTGATGACTTGACAGATGCATTTTTCAGCACTTTAGAGAGACTAATGTCTCTCGGTTCCGAAAAGGTGTTATTCTTAGCTTTGGAAAAACGCTACAACTTTAGTCTTCATGATCTTGATGTTGTTGCAAATGGTTATTTACATTTCCGCAGTTATTTGCAGTCGGGAGGGGGTAAGCATACTCTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

305

Amino Acids

33.9

Weight (kDa)

4.8

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 106 - 206 1.6e-17 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 1 cut(s) 329
AccI GTMKAC 1 cut(s) 454
AciI CCGC 1 cut(s) 874
AclWI GGATC 1 cut(s) 502
AcvI CACGTG 1 cut(s) 467
AfaI GTAC 3 cut(s) 63, 439, 579
AfiI CCNNNNNNNGG 2 cut(s) 137, 329
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 2 cut(s) 182, 680
AjnI CCWGG 4 cut(s) 79, 136, 559, 602
AluBI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
AluI AGCT 7 cut(s) 159, 282, 403, 538, 695, 710, 806
Alw26I GTCTC 3 cut(s) 14, 760, 780
AlwI GGATC 1 cut(s) 502
AoxI GGCC 3 cut(s) 91, 134, 605
ApeKI GCWGC 2 cut(s) 208, 710
AspS9I GGNCC 3 cut(s) 92, 606, 663
AsuHPI GGTGA 2 cut(s) 61, 103
AvaII GGWCC 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 153
BbrPI CACGTG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 220, 697
BccI CCATC 4 cut(s) 128, 227, 302, 401
BciT130I CCWGG 4 cut(s) 81, 138, 561, 604
BcoDI GTCTC 3 cut(s) 14, 760, 780
BfaI CTAG 3 cut(s) 252, 422, 461
BfmI CTRYAG 4 cut(s) 283, 567, 711, 724
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 2 cut(s) 209, 711
BlsI GCNGC 2 cut(s) 210, 712
Bme1390I CCNGG 4 cut(s) 81, 138, 561, 604
Bme18I GGWCC 1 cut(s) 663
BmgT120I GGNCC 3 cut(s) 92, 606, 663
BmiI GGNNCC 3 cut(s) 74, 608, 784
BmrFI CCNGG 4 cut(s) 81, 138, 561, 604
BmsI GCATC 1 cut(s) 733
BoxI GACNNNNGTC 1 cut(s) 772
BpiI GAAGAC 1 cut(s) 824
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BsaAI YACGTR 2 cut(s) 467, 581
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 131, 496, 602, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 329
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 4 cut(s) 81, 138, 561, 604
BseDI CCNNGG 4 cut(s) 131, 496, 602, 636
BseGI GGATG 5 cut(s) 120, 238, 294, 395, 600
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 137, 329
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 220, 697
BshFI GGCC 3 cut(s) 93, 136, 607
BshNI GGYRCC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 137, 329
BsmAI GTCTC 3 cut(s) 14, 760, 780
BsnI GGCC 3 cut(s) 93, 136, 607
Bsp1286I GDGCHC 2 cut(s) 77, 153
Bsp143I GATC 3 cut(s) 238, 507, 838
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 874
BspANI GGCC 3 cut(s) 93, 136, 607
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 3 cut(s) 74, 608, 784
BspMAI CTGCAG 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 4 cut(s) 131, 496, 602, 636
BssMI GATC 3 cut(s) 238, 507, 838
BssNAI GTATAC 1 cut(s) 455
BssT1I CCWWGG 3 cut(s) 131, 496, 636
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 4 cut(s) 81, 138, 561, 604
Bst4CI ACNGT 4 cut(s) 481, 521, 571, 728
Bst6I CTCTTC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBAI YACGTR 2 cut(s) 467, 581
BstDEI CTNAG 1 cut(s) 802
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 5 cut(s) 120, 238, 294, 395, 600
BstKTI GATC 3 cut(s) 241, 510, 841
BstMAI GTCTC 3 cut(s) 14, 760, 780
BstMBI GATC 3 cut(s) 238, 507, 838
BstMWI GCNNNNNNNGC 2 cut(s) 470, 692
BstNI CCWGG 4 cut(s) 81, 138, 561, 604
BstPAI GACNNNNGTC 1 cut(s) 772
BstSCI CCNGG 4 cut(s) 79, 136, 559, 602
BstSFI CTRYAG 4 cut(s) 283, 567, 711, 724
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 220, 697
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 132
BstYI RGATCY 1 cut(s) 507
BstZ17I GTATAC 1 cut(s) 455
BsuRI GGCC 3 cut(s) 93, 136, 607
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 5 cut(s) 120, 238, 294, 395, 600
BtsIMutI CAGTG 3 cut(s) 21, 486, 733
BveI ACCTGC 1 cut(s) 328
CciI TCATGA 1 cut(s) 835
Cfr13I GGNCC 3 cut(s) 92, 606, 663
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 3 cut(s) 62, 438, 578
CviAII CATG 5 cut(s) 244, 497, 689, 836, 915
CviQI GTAC 3 cut(s) 62, 438, 578
DdeI CTNAG 1 cut(s) 802
DpnI GATC 3 cut(s) 240, 509, 840
DpnII GATC 3 cut(s) 238, 507, 838
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 131, 496, 636
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 467
EcoRII CCWGG 4 cut(s) 79, 136, 559, 602
EcoT14I CCWWGG 3 cut(s) 131, 496, 636
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 131, 496, 636
FaeI CATG 5 cut(s) 247, 500, 692, 839, 918
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FatI CATG 5 cut(s) 243, 496, 688, 835, 914
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 209, 711
FokI GGATG 5 cut(s) 107, 245, 281, 382, 607
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 209, 711
FspBI CTAG 3 cut(s) 252, 422, 461
GluI GCNGC 2 cut(s) 209, 711
HaeIII GGCC 3 cut(s) 93, 136, 607
Hin1II CATG 5 cut(s) 247, 500, 692, 839, 918
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 3 cut(s) 11, 598, 629
HphI GGTGA 2 cut(s) 61, 103
Hpy166II GTNNAC 4 cut(s) 64, 390, 455, 584
Hpy188I TCNGA 6 cut(s) 37, 163, 367, 400, 673, 787
Hpy188III TCNNGA 4 cut(s) 545, 836, 842, 891
Hpy8I GTNNAC 4 cut(s) 64, 390, 455, 584
HpyAV CCTTC 2 cut(s) 40, 124
HpyCH4III ACNGT 4 cut(s) 481, 521, 571, 728
HpyCH4IV ACGT 3 cut(s) 168, 466, 580
HpyCH4V TGCA 7 cut(s) 337, 379, 713, 746, 854, 886, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 692
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 3 cut(s) 168, 466, 580
Hsp92II CATG 5 cut(s) 247, 500, 692, 839, 918
Kzo9I GATC 3 cut(s) 238, 507, 838
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 220, 697
LweI GCATC 1 cut(s) 733
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 3 cut(s) 252, 422, 461
MaeII ACGT 3 cut(s) 168, 466, 580
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 240, 509, 840
MboI GATC 3 cut(s) 238, 507, 838
MboII GAAGA 5 cut(s) 17, 20, 194, 638, 824
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 2 cut(s) 77, 153
MluCI AATT 2 cut(s) 266, 675
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 5 cut(s) 31, 105, 223, 643, 887
Mph1103I ATGCAT 1 cut(s) 748
MseI TTAA 3 cut(s) 540, 617, 719
MslI CAYNNNNRTG 1 cut(s) 501
MspR9I CCNGG 4 cut(s) 81, 138, 561, 604
MvaI CCWGG 4 cut(s) 81, 138, 561, 604
MwoI GCNNNNNNNGC 2 cut(s) 470, 692
NcoI CCATGG 1 cut(s) 496
NdeII GATC 3 cut(s) 238, 507, 838
NlaIII CATG 5 cut(s) 247, 500, 692, 839, 918
NlaIV GGNNCC 3 cut(s) 74, 608, 784
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 748
PagI TCATGA 1 cut(s) 835
PaqCI CACCTGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 2 cut(s) 598, 629
PflMI CCANNNNNTGG 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 2 cut(s) 210, 712
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 2 cut(s) 467, 581
PshAI GACNNNNGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 4 cut(s) 79, 136, 559, 602
PspCI CACGTG 1 cut(s) 467
PspGI CCWGG 4 cut(s) 79, 136, 559, 602
PspN4I GGNNCC 3 cut(s) 74, 608, 784
PspPI GGNCC 3 cut(s) 92, 606, 663
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 3 cut(s) 63, 439, 579
RsaNI GTAC 3 cut(s) 62, 438, 578
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 3 cut(s) 540, 617, 719
SatI GCNGC 2 cut(s) 209, 711
Sau3AI GATC 3 cut(s) 238, 507, 838
Sau96I GGNCC 3 cut(s) 92, 606, 663
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 4 cut(s) 81, 138, 561, 604
SduI GDGCHC 2 cut(s) 77, 153
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 4 cut(s) 283, 567, 711, 724
SinI GGWCC 1 cut(s) 663
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 2 cut(s) 266, 675
SsiI CCGC 1 cut(s) 874
SspMI CTAG 3 cut(s) 252, 422, 461
StyD4I CCNGG 4 cut(s) 79, 136, 559, 602
StyI CCWWGG 3 cut(s) 131, 496, 636
TaaI ACNGT 4 cut(s) 481, 521, 571, 728
TaiI ACGT 3 cut(s) 171, 469, 583
TasI AATT 2 cut(s) 266, 675
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 2 cut(s) 598, 629
Tru1I TTAA 3 cut(s) 540, 617, 719
Tru9I TTAA 3 cut(s) 540, 617, 719
TscAI CASTG 3 cut(s) 21, 486, 733
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 208, 710
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 611, 705, 824
TspRI CASTG 3 cut(s) 21, 486, 733
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 3 cut(s) 252, 422, 461
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.