pycom17g20010

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011335
Physical Location & Seq
Forward (+)
18127717 .. 18130461
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g20010.4

Sequence Viewer

Length: 1008 bp
ATGGAAGAAGGTCCGATGGAGATGACGGGGCAAATGAAGCGCAGAGATTCAGAGGAGGAAGAGCAGGTGATGAGTGAAGTGCACTTGGGCTGCCCACCTGGTTTCTGTGGCCCCCACATTTCCCACTTCACCTTCTCCATCCCACCTGGATTTGAACCTGCTTCCCCAAATCAATTGACTGGCTTGGATGAGGATGGTGATCTTGTTCTTCCGAGACGCAGCAAATTATCAACTTCAAGTTGCAGTGTGAGCATCCAGCATAATATCACATCGTCAATTCCGAGTGTCGGCTTGCAGGTGTGGAGGGCAGAACTTGTGTTATCTGATTTTTTGCTGCATAAGATGTTTACATCATCTGAACTAGATGGAATTGTCTGTTTAGAACTTGGTGCTGGTACAGGGTTGGTTGGTGTATTACTTGCACGCGTTGCGAAGACAGTGTTTATAACAGACCGTGGGAATGAAGTCCTTGACAACTGTGCCAAGAATGTCGACCTTAATTCTGAAATGTTTAGTCAACAAGCTTCTGTCCATGTACGTGAACTTGATTGGATGAATCCATGGCCCCCAAGAATAACCATAAAAGAATCCTCCCTGGGTGAAAGGTATTCTTGGACCTTTTCAGAAGTTGAAGCTGCCCAGGAAGCTTCTGTGCTTGTAGCTGCAGATGTAATCTACAGTGATGACCTGACAGACGCATTTTTCAGCACTTTAGAGAGATTAATGCCTCTGGGATCAAAAAAGGTGTTATACTTGGCGTTGGAAAAGCGTTACAATTTCAGTCTTGACGATCTCGCCATTGTGGCAAATGGTTATGAGCATTTCCGAAGCTTTTTGCAGTTAGAGGGGGATGGTGCAGATTGCGAAGGCCTCGAATGTGGTTCAGTGCCTTGCTTTGTGGGCAAATGCATAGACATTACACAGGTTCCTCAGTATGTGAAAGAGTATGATCGAGGAAATGATGTTGAGCTTTGGCAAATCAAGTGTGACAAAAGAAAACCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

336

Amino Acids

37.26

Weight (kDa)

4.67

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79915 AT1G79915
fragaria_vesca FvH4_6g31280 FvH4_6g31280 FvH4_6g31280
malus_domestica MD17G1194300.v1.1
prunus_persica Prupe.3G070300_v2.0.a1
pyrus_communis pycom17g20010
rosa_chinensis RchiOBHm_Chr2g0138011
rosa_laevigata RLG00000019712
rosa_roxburghii Rroxscaffold_2G00106580
rosa_rugosa Rorug02G0348800 Rorug02G0348900 Rorug02G0349000 Rorug02G0349100
rosa_samantha Rh2AG395700 Rh2BG411000 Rh2CG382200 Rh2DG417500
rosa_wichuraiana Rw2G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AarI CACCTGC 2 cut(s) 55, 286
Acc36I ACCTGC 3 cut(s) 55, 166, 286
AccI GTMKAC 1 cut(s) 492
AccII CGCG 1 cut(s) 426
AclWI GGATC 1 cut(s) 742
AfaI GTAC 2 cut(s) 397, 537
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 155, 237, 632
AjnI CCWGG 4 cut(s) 97, 145, 594, 639
AluBI AGCT 6 cut(s) 524, 635, 647, 662, 831, 970
AluI AGCT 6 cut(s) 524, 635, 647, 662, 831, 970
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 208
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 742
AoxI GGCC 3 cut(s) 109, 563, 868
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 5 cut(s) 90, 219, 334, 635, 662
AseI ATTAAT 1 cut(s) 722
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 4 cut(s) 11, 110, 564, 615
AsuHPI GGTGA 4 cut(s) 79, 121, 209, 611
AvaII GGWCC 2 cut(s) 11, 615
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 5 cut(s) 77, 231, 321, 622, 649
BccI CCATC 5 cut(s) 10, 146, 188, 359, 845
BciT130I CCWGG 4 cut(s) 99, 147, 596, 641
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 2 cut(s) 663, 676
BfuAI ACCTGC 3 cut(s) 55, 166, 286
BglI GCCNNNNNGGC 1 cut(s) 803
BisI GCNGC 5 cut(s) 91, 220, 335, 636, 663
BlsI GCNGC 5 cut(s) 92, 221, 336, 637, 664
Bme1390I CCNGG 4 cut(s) 99, 147, 596, 641
Bme18I GGWCC 2 cut(s) 11, 615
BmgT120I GGNCC 4 cut(s) 11, 110, 564, 615
BmiI GGNNCC 3 cut(s) 112, 566, 927
BmrFI CCNGG 4 cut(s) 99, 147, 596, 641
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 539
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 5 cut(s) 454, 560, 594, 595, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 4 cut(s) 99, 147, 596, 641
BseDI CCNNGG 5 cut(s) 454, 560, 594, 595, 639
BseGI GGATG 6 cut(s) 138, 193, 199, 252, 558, 856
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 5 cut(s) 77, 231, 321, 622, 649
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 3 cut(s) 111, 565, 870
BsiHKAI GWGCWC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsnI GGCC 3 cut(s) 111, 565, 870
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 199, 734, 790, 949
Bsp19I CCATGG 1 cut(s) 560
BspANI GGCC 3 cut(s) 111, 565, 870
BspCNI CTCAG 1 cut(s) 943
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 112, 566, 927
BspMAI CTGCAG 1 cut(s) 667
BspMI ACCTGC 3 cut(s) 55, 166, 286
BspPI GGATC 1 cut(s) 742
BspQI GCTCTTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 5 cut(s) 454, 560, 594, 595, 639
BssMI GATC 4 cut(s) 199, 734, 790, 949
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 99, 147, 596, 641
Bst4CI ACNGT 4 cut(s) 439, 455, 479, 680
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 293, 424
BstDEI CTNAG 1 cut(s) 930
BstDSI CCRYGG 2 cut(s) 454, 560
BstF5I GGATG 6 cut(s) 138, 193, 199, 252, 558, 856
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 4 cut(s) 202, 737, 793, 952
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 4 cut(s) 199, 734, 790, 949
BstMWI GCNNNNNNNGC 6 cut(s) 37, 249, 428, 644, 803, 900
BstNI CCWGG 4 cut(s) 99, 147, 596, 641
BstSCI CCNGG 4 cut(s) 97, 145, 594, 639
BstSFI CTRYAG 2 cut(s) 663, 676
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 5 cut(s) 77, 231, 321, 622, 649
BstV2I GAAGAC 1 cut(s) 440
BsuRI GGCC 3 cut(s) 111, 565, 870
BtgI CCRYGG 2 cut(s) 454, 560
BtsCI GGATG 6 cut(s) 138, 193, 199, 252, 558, 856
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 4 cut(s) 250, 444, 685, 891
BveI ACCTGC 3 cut(s) 55, 166, 286
Cac8I GCNNGC 2 cut(s) 293, 424
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 11, 110, 564, 615
CseI GACGC 2 cut(s) 225, 704
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 396, 536
CviAII CATG 2 cut(s) 533, 561
CviQI GTAC 2 cut(s) 396, 536
DdeI CTNAG 1 cut(s) 930
DpnI GATC 4 cut(s) 201, 736, 792, 951
DpnII GATC 4 cut(s) 199, 734, 790, 949
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 560
Eco147I AGGCCT 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 11, 615
EcoRII CCWGG 4 cut(s) 97, 145, 594, 639
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 2 cut(s) 536, 564
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FatI CATG 2 cut(s) 532, 560
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 5 cut(s) 91, 220, 335, 636, 663
FokI GGATG 6 cut(s) 125, 200, 206, 239, 565, 863
Fsp4HI GCNGC 5 cut(s) 91, 220, 335, 636, 663
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 41
GluI GCNGC 5 cut(s) 91, 220, 335, 636, 663
HaeIII GGCC 3 cut(s) 111, 565, 870
HgaI GACGC 2 cut(s) 225, 704
HhaI GCGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 536, 564
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 493, 518
HindII GTYRAC 2 cut(s) 493, 518
HindIII AAGCTT 3 cut(s) 522, 645, 829
HinfI GANTC 3 cut(s) 47, 556, 587
HphI GGTGA 4 cut(s) 79, 121, 209, 611
Hpy166II GTNNAC 5 cut(s) 82, 348, 493, 518, 542
Hpy188I TCNGA 9 cut(s) 15, 52, 213, 282, 325, 358, 505, 625, 827
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 5 cut(s) 82, 348, 493, 518, 542
HpyAV CCTTC 2 cut(s) 142, 860
HpyCH4III ACNGT 4 cut(s) 439, 455, 479, 680
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 9 cut(s) 82, 243, 295, 337, 422, 665, 838, 857, 909
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 249, 428, 644, 803, 900
HpyF3I CTNAG 1 cut(s) 930
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 2 cut(s) 536, 564
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 199, 734, 790, 949
LguI GCTCTTC 1 cut(s) 54
Lsp1109I GCAGC 5 cut(s) 77, 231, 321, 622, 649
LweI GCATC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 770, 986
MalI GATC 4 cut(s) 201, 736, 792, 951
MboI GATC 4 cut(s) 199, 734, 790, 949
MboII GAAGA 4 cut(s) 17, 71, 200, 445
MfeI CAATTG 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 173, 224, 276, 369, 499, 775
MluI ACGCGT 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 741
Mph1103I ATGCAT 1 cut(s) 911
MseI TTAA 2 cut(s) 498, 722
MslI CAYNNNNRTG 1 cut(s) 537
MspR9I CCNGG 4 cut(s) 99, 147, 596, 641
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 4 cut(s) 99, 147, 596, 641
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 6 cut(s) 37, 249, 428, 644, 803, 900
NcoI CCATGG 1 cut(s) 560
NdeII GATC 4 cut(s) 199, 734, 790, 949
NlaIII CATG 2 cut(s) 536, 564
NlaIV GGNNCC 3 cut(s) 112, 566, 927
NmuCI GTSAC 1 cut(s) 986
NsiI ATGCAT 1 cut(s) 911
PaqCI CACCTGC 2 cut(s) 55, 286
PasI CCCWGGG 1 cut(s) 595
PceI AGGCCT 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfeI GAWTC 3 cut(s) 47, 556, 587
PkrI GCNGC 5 cut(s) 92, 221, 336, 637, 664
Ppu21I YACGTR 1 cut(s) 539
PshBI ATTAAT 1 cut(s) 722
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 4 cut(s) 97, 145, 594, 639
PspGI CCWGG 4 cut(s) 97, 145, 594, 639
PspN4I GGNNCC 3 cut(s) 112, 566, 927
PspPI GGNCC 4 cut(s) 11, 110, 564, 615
PstI CTGCAG 1 cut(s) 667
RsaI GTAC 2 cut(s) 397, 537
RsaNI GTAC 2 cut(s) 396, 536
RseI CAYNNNNRTG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 498, 722
SatI GCNGC 5 cut(s) 91, 220, 335, 636, 663
Sau3AI GATC 4 cut(s) 199, 734, 790, 949
Sau96I GGNCC 4 cut(s) 11, 110, 564, 615
ScrFI CCNGG 4 cut(s) 99, 147, 596, 641
SduI GDGCHC 1 cut(s) 84
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 2 cut(s) 663, 676
SinI GGWCC 2 cut(s) 11, 615
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 6 cut(s) 173, 224, 276, 369, 499, 775
SseBI AGGCCT 1 cut(s) 870
SspMI CTAG 1 cut(s) 362
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 4 cut(s) 97, 145, 594, 639
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 4 cut(s) 439, 455, 479, 680
TaiI ACGT 1 cut(s) 541
TaqI TCGA 3 cut(s) 492, 873, 952
TasI AATT 6 cut(s) 173, 224, 276, 369, 499, 775
TfiI GAWTC 3 cut(s) 47, 556, 587
Tru1I TTAA 2 cut(s) 498, 722
Tru9I TTAA 2 cut(s) 498, 722
TscAI CASTG 4 cut(s) 250, 444, 685, 891
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 5 cut(s) 90, 219, 334, 635, 662
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 3 cut(s) 50, 477, 569
TspRI CASTG 4 cut(s) 250, 444, 685, 891
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 11, 615
VspI ATTAAT 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.