Rorug02G0349000

Methyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
43751183 .. 43755623
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0349000.1

Sequence Viewer

Length: 255 bp
ATGATGAAGACTGCGTATTGGGTTTTGGTTGTTTCCATAATCTTGAGCTTTTGTGCATCTGGGACTTCCTCGATTGAGAATTATCACCAAGCGTTTCCTATTGTGGAACCAGATCCTGGTCATACAAAACTTCGTCTTTCAAAGGAAGGCCTAGAGGCCATTGAAAGAATAAAAACTCTGATTGCAGCTGTTGCAGTAAGATTAGATCCGTTTTCCTCGGCATCAGTAGAACTCAGAATTTTATATTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

6.71

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011335)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AclWI GGATC 2 cut(s) 107, 200
AcsI RAATTY 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 141, 164
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 48, 188
AluI AGCT 2 cut(s) 48, 188
AlwI GGATC 2 cut(s) 107, 200
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 148, 156
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 65, 230
BpiI GAAGAC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 150, 158
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 150, 158
Bsp143I GATC 2 cut(s) 112, 205
BspANI GGCC 2 cut(s) 150, 158
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 107, 200
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 112, 205
Bst2UI CCWGG 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 233
BstKTI GATC 2 cut(s) 115, 208
BstMBI GATC 2 cut(s) 112, 205
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 112, 205
BstYI RGATCY 2 cut(s) 112, 205
BsuRI GGCC 2 cut(s) 150, 158
CaiI CAGNNNCTG 1 cut(s) 116
CviJI RGCY 4 cut(s) 48, 150, 158, 188
CviKI_1 RGCY 4 cut(s) 48, 150, 158, 188
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 114, 207
DpnII GATC 2 cut(s) 112, 205
Eco147I AGGCCT 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 115
FaiI YATR 3 cut(s) 38, 123, 244
FaqI GGGAC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 150, 158
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 180, 236
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 56, 185, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 233
Kzo9I GATC 2 cut(s) 112, 205
LpnPI CCDG 4 cut(s) 45, 102, 123, 129
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 2 cut(s) 65, 230
MaeI CTAG 1 cut(s) 152
MalI GATC 2 cut(s) 114, 207
MboI GATC 2 cut(s) 112, 205
MboII GAAGA 1 cut(s) 19
MflI RGATCY 2 cut(s) 112, 205
MluCI AATT 2 cut(s) 79, 237
MnlI CCTC 3 cut(s) 79, 148, 226
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 112, 205
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 112, 205
PvuII CAGCTG 1 cut(s) 188
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 112, 205
ScrFI CCNGG 1 cut(s) 117
SetI ASST 2 cut(s) 50, 190
SfaNI GCATC 2 cut(s) 65, 230
SgeI CNNG 9 cut(s) 55, 72, 82, 101, 122, 128, 129, 164, 229
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 79, 237
SseBI AGGCCT 1 cut(s) 150
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 79, 237
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.