Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003306

Physical Location & Seq

Genomic Coordinates Forward (+)

24921813 .. 24927288

Gene Structure 5476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCTTGTAGCGGCTGTTTCTTCTTTCTTATTTGGCTACCATCTAGGAGTGGTTAACGAGACACTAGATAGCATTTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTGAGTACATGCTTAGGAGCTGCTTTTGTTGGATCTCTAGTTAGTGGCTATATCCTAGATGGAGTTGGGCATCGTAGGGCATTCCAGTTGTGTGCACTTCCGATGATAATCGGTGCGTCGATGAGTGCAACGGCTCACAGCCTATGGGGCATGATATTAGGGCGGATATTTGTTGGAACTGGGATGGGTATTGGTCCTCCTGTTGCGGCTCTCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGAACATTTGGTAGCTTCACACAAATTGCTACATGTCTTGGACTGATGGGGGCTCTATTCATTGGACTCCCAGCCAAGGATATAGTGGGTTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGAGAGGAAGAGGCACTGAAGCTGAAGTTGAATTTGAGAAACTTTTAGGAGGACCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAACGAGGGGATGAAGTGGAGACAGTAAAGTTCTCAGAGCTAGTGTATGGCCGCCATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACTGTCTTTAAAAGCTTCGGCATTCCTTCAGCTATTGCAAATGTATGTGTTGGAGTAGCAAATCTATCAGGGTCAATTGTTGCAATGATATTGATGGATAAGCTTGGGAGAAAAGTACTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCGTTGAGTCTTCAAGTAAGTGGAGCAAGTTCTTTTACATCAGGATCTGGAGCACTGAGTCTGTCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTCGGAGCTGGTCCAGTTCCTGGTCTTCTCCTATCAGAAATTCTTCCTAGCCGTATTAGAGCAAAGGCCATGGCAGTTTGCATGGCTGTGCATTGGGTGGTAAATTTCTTTGTTGGCCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTTCTGTATACAATCTTTGGTATTTTTTGTGTACTGGCTGTGATATTTGTGAAGAGAAATGTAGTGGAAACAAAAGGGAAGTCACTCCAAGAAATTGAAATTGCACTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

435

Amino Acids

46.11

Weight (kDa)

8.7

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 431	1.4e-88	Sugar (and other) transporter
MFS_1	PF07690	6 - 345	1.3e-18	Major Facilitator Superfamily
MFS_1	PF07690	261 - 421	6.4e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79820 AT1G79820 AT1G79820 AT1G79820 AT1G79820
fragaria_vesca	FvH4_6g31830
malus_domestica	MD09G1209000.v1.1 MD17G1190600.v1.1
prunus_persica	Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139081
rosa_laevigata	RLG00000019789
rosa_roxburghii	Rroxscaffold_2G00105690 Rroxscaffold_3G00260160 Rroxscaffold_3G00260170
rosa_samantha	Rh1AG411900 Rh2AG404700 Rh2BG414700 Rh2CG391000 Rh2DG424400
rosa_wichuraiana	Rw2G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1055
AccI	GTMKAC	2 cut(s)	725, 1199
AciI	CCGC	5 cut(s)	11, 286, 329, 466, 697
AclWI	GGATC	2 cut(s)	163, 985
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	4 cut(s)	584, 617, 1074, 1138
AcuI	CTGAAG	3 cut(s)	591, 597, 795
AfaI	GTAC	3 cut(s)	130, 900, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	445, 1055
AflIII	ACRYGT	2 cut(s)	401, 610
AgsI	TTSAA	5 cut(s)	553, 584, 706, 947, 1289
AjnI	CCWGG	1 cut(s)	1054
Alw21I	GWGCWC	2 cut(s)	220, 988
Alw26I	GTCTC	2 cut(s)	53, 659
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	163, 985
AlwNI	CAGNNNCTG	2 cut(s)	980, 1055
AoxI	GGCC	4 cut(s)	694, 1101, 1150, 1184
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	143, 497, 1012
ApoI	RAATTY	4 cut(s)	584, 617, 1074, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	1256, 1288
Asp700I	GAANNNNTTC	2 cut(s)	104, 1077
AspS9I	GGNCC	4 cut(s)	317, 605, 1046, 1184
AsuHPI	GGTGA	1 cut(s)	345
AvaII	GGWCC	3 cut(s)	317, 605, 1046
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	935, 1052
Bbv12I	GWGCWC	2 cut(s)	220, 988
BbvI	GCAGC	3 cut(s)	130, 484, 999
BccI	CCATC	5 cut(s)	48, 176, 301, 409, 871
BceAI	ACGGC	2 cut(s)	270, 1071
BciT130I	CCWGG	1 cut(s)	1056
BcoDI	GTCTC	2 cut(s)	53, 659
BfaI	CTAG	6 cut(s)	44, 65, 161, 179, 686, 1083
BfmI	CTRYAG	2 cut(s)	498, 1298
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	6 cut(s)	12, 144, 330, 498, 697, 1013
BlsI	GCNGC	6 cut(s)	13, 145, 331, 499, 698, 1014
BmcAI	AGTACT	1 cut(s)	900
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	3 cut(s)	317, 605, 1046
BmgT120I	GGNCC	4 cut(s)	317, 605, 1046, 1184
BmrFI	CCNGG	1 cut(s)	1056
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	2 cut(s)	935, 1052
BpmI	CTGGAG	2 cut(s)	1002, 1193
Bpu10I	CCTNAGC	2 cut(s)	111, 136
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	85, 444, 1104
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 1055
Bse1I	ACTGG	5 cut(s)	208, 307, 925, 1049, 1230
Bse3DI	GCAATG	2 cut(s)	630, 873
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	3 cut(s)	85, 444, 1104
BseGI	GGATG	2 cut(s)	312, 661
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	445, 1055
BseMI	GCAATG	2 cut(s)	630, 873
BseMII	CTCAG	2 cut(s)	693, 980
BseNI	ACTGG	5 cut(s)	208, 307, 925, 1049, 1230
BseRI	GAGGAG	1 cut(s)	769
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	130, 484, 999
BseYI	CCCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	4 cut(s)	696, 1103, 1152, 1186
BsiHKAI	GWGCWC	2 cut(s)	220, 988
BslI	CCNNNNNNNGG	2 cut(s)	445, 1055
BsmAI	GTCTC	2 cut(s)	53, 659
BsmI	GAATGC	2 cut(s)	203, 804
BsnI	GGCC	4 cut(s)	696, 1103, 1152, 1186
Bsp1286I	GDGCHC	3 cut(s)	220, 424, 988
Bsp143I	GATC	2 cut(s)	155, 977
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	5 cut(s)	11, 286, 329, 466, 697
BspANI	GGCC	4 cut(s)	696, 1103, 1152, 1186
BspCNI	CTCAG	2 cut(s)	692, 981
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	163, 985
BsrDI	GCAATG	2 cut(s)	630, 873
BsrI	ACTGG	5 cut(s)	208, 307, 925, 1049, 1230
BssECI	CCNNGG	3 cut(s)	85, 444, 1104
BssMI	GATC	2 cut(s)	155, 977
BssNAI	GTATAC	1 cut(s)	1200
BssT1I	CCWWGG	3 cut(s)	85, 444, 1104
Bst1107I	GTATAC	1 cut(s)	1200
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	4 cut(s)	490, 670, 787, 1302
Bst6I	CTCTTC	2 cut(s)	556, 1238
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	507, 1010
BstDEI	CTNAG	4 cut(s)	111, 136, 679, 989
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	2 cut(s)	312, 661
BstKTI	GATC	2 cut(s)	158, 980
BstMAI	GTCTC	2 cut(s)	53, 659
BstMBI	GATC	2 cut(s)	155, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 506
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	4 cut(s)	135, 405, 614, 1012
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	2 cut(s)	498, 1298
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	130, 484, 999
BstV2I	GAAGAC	2 cut(s)	935, 1052
BstX2I	RGATCY	2 cut(s)	155, 977
BstYI	RGATCY	2 cut(s)	155, 977
BstZ17I	GTATAC	1 cut(s)	1200
BsuRI	GGCC	4 cut(s)	696, 1103, 1152, 1186
BtgI	CCRYGG	1 cut(s)	1104
BtsCI	GGATG	2 cut(s)	312, 661
BtsI	GCAGTG	2 cut(s)	507, 936
BtsIMutI	CAGTG	4 cut(s)	507, 567, 936, 986
Cac8I	GCNNGC	2 cut(s)	507, 1010
CaiI	CAGNNNCTG	2 cut(s)	980, 1055
Cfr13I	GGNCC	4 cut(s)	317, 605, 1046, 1184
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	129, 899, 1223
CviAII	CATG	9 cut(s)	132, 274, 402, 517, 611, 925, 1009, 1105, 1117
CviQI	GTAC	3 cut(s)	129, 899, 1223
DdeI	CTNAG	4 cut(s)	111, 136, 679, 989
DpnI	GATC	2 cut(s)	157, 979
DpnII	GATC	2 cut(s)	155, 977
DraI	TTTAAA	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	2 cut(s)	556, 1238
EarI	CTCTTC	2 cut(s)	556, 1238
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	85, 444, 1104
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	3 cut(s)	317, 605, 1046
Eco57I	CTGAAG	3 cut(s)	591, 597, 795
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	3 cut(s)	85, 444, 1104
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	3 cut(s)	85, 444, 1104
FaeI	CATG	9 cut(s)	135, 277, 405, 520, 614, 928, 1012, 1108, 1120
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	9 cut(s)	131, 273, 401, 516, 610, 924, 1008, 1104, 1116
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	2 cut(s)	725, 1199
Fnu4HI	GCNGC	6 cut(s)	12, 144, 330, 498, 697, 1013
FokI	GGATG	2 cut(s)	319, 668
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	6 cut(s)	12, 144, 330, 498, 697, 1013
FspBI	CTAG	6 cut(s)	44, 65, 161, 179, 686, 1083
GluI	GCNGC	6 cut(s)	12, 144, 330, 498, 697, 1013
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	2 cut(s)	1002, 1193
HaeIII	GGCC	4 cut(s)	696, 1103, 1152, 1186
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	9 cut(s)	135, 277, 405, 520, 614, 928, 1012, 1108, 1120
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	796, 884
HinfI	GANTC	5 cut(s)	100, 435, 535, 940, 991
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	5 cut(s)	55, 218, 726, 1200, 1223
Hpy188I	TCNGA	6 cut(s)	225, 346, 646, 682, 1040, 1072
Hpy188III	TCNNGA	4 cut(s)	80, 553, 975, 981
Hpy8I	GTNNAC	5 cut(s)	55, 218, 726, 1200, 1223
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	115, 819
HpyCH4III	ACNGT	4 cut(s)	490, 670, 787, 1302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 506
HpyF3I	CTNAG	4 cut(s)	111, 136, 679, 989
Hsp92II	CATG	9 cut(s)	135, 277, 405, 520, 614, 928, 1012, 1108, 1120
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	155, 977
LmnI	GCTCC	4 cut(s)	140, 956, 983, 1040
Lsp1109I	GCAGC	3 cut(s)	130, 484, 999
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	6 cut(s)	44, 65, 161, 179, 686, 1083
MaeIII	GTNAC	1 cut(s)	1272
MalI	GATC	2 cut(s)	157, 979
MboI	GATC	2 cut(s)	155, 977
MboII	GAAGA	7 cut(s)	12, 573, 896, 935, 1052, 1070, 1255
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	2 cut(s)	155, 977
MhlI	GDGCHC	3 cut(s)	220, 424, 988
MluCI	AATT	9 cut(s)	393, 584, 617, 632, 858, 1074, 1138, 1284, 1290
MlyI	GAGTC	4 cut(s)	429, 544, 949, 1000
MmeI	TCCRAC	3 cut(s)	133, 277, 814
MnlI	CCTC	7 cut(s)	330, 549, 551, 557, 596, 644, 790
MroXI	GAANNNNTTC	2 cut(s)	104, 1077
MseI	TTAA	3 cut(s)	54, 615, 792
MslI	CAYNNNNRTG	2 cut(s)	929, 1121
MspA1I	CMGCKG	1 cut(s)	748
MspR9I	CCNGG	1 cut(s)	1056
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	2 cut(s)	203, 804
MvaI	CCWGG	1 cut(s)	1056
MwoI	GCNNNNNNNGC	2 cut(s)	270, 506
NcoI	CCATGG	1 cut(s)	1104
NdeII	GATC	2 cut(s)	155, 977
NlaIII	CATG	9 cut(s)	135, 277, 405, 520, 614, 928, 1012, 1108, 1120
NmuCI	GTSAC	1 cut(s)	1272
NspI	RCATGY	4 cut(s)	135, 405, 614, 1012
PaeI	GCATGC	1 cut(s)	1012
PciI	ACATGT	2 cut(s)	401, 610
PctI	GAATGC	2 cut(s)	203, 804
PdmI	GAANNNNTTC	2 cut(s)	104, 1077
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	1055
PkrI	GCNGC	6 cut(s)	13, 145, 331, 499, 698, 1014
PleI	GAGTC	4 cut(s)	429, 543, 948, 999
PpsI	GAGTC	4 cut(s)	429, 543, 948, 999
PscI	ACATGT	2 cut(s)	401, 610
Psp6I	CCWGG	1 cut(s)	1054
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	1054
PspPI	GGNCC	4 cut(s)	317, 605, 1046, 1184
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	2 cut(s)	980, 1055
PsuI	RGATCY	2 cut(s)	155, 977
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	130, 900, 1224
RsaNI	GTAC	3 cut(s)	129, 899, 1223
RseI	CAYNNNNRTG	2 cut(s)	929, 1121
SaqAI	TTAA	3 cut(s)	54, 615, 792
SatI	GCNGC	6 cut(s)	12, 144, 330, 498, 697, 1013
Sau3AI	GATC	2 cut(s)	155, 977
Sau96I	GGNCC	4 cut(s)	317, 605, 1046, 1184
ScaI	AGTACT	1 cut(s)	900
SchI	GAGTC	4 cut(s)	429, 544, 949, 1000
ScrFI	CCNGG	1 cut(s)	1056
SduI	GDGCHC	3 cut(s)	220, 424, 988
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	498, 1298
SinI	GGWCC	3 cut(s)	317, 605, 1046
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1121
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	9 cut(s)	393, 584, 617, 632, 858, 1074, 1138, 1284, 1290
SsiI	CCGC	5 cut(s)	11, 286, 329, 466, 697
SspMI	CTAG	6 cut(s)	44, 65, 161, 179, 686, 1083
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	3 cut(s)	85, 444, 1104
TaaI	ACNGT	4 cut(s)	490, 670, 787, 1302
TaqI	TCGA	1 cut(s)	242
TasI	AATT	9 cut(s)	393, 584, 617, 632, 858, 1074, 1138, 1284, 1290
TatI	WGTACW	3 cut(s)	128, 898, 1222
TauI	GCSGC	3 cut(s)	14, 332, 699
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	54, 615, 792
Tru9I	TTAA	3 cut(s)	54, 615, 792
TscAI	CASTG	4 cut(s)	507, 574, 936, 993
TseFI	GTSAC	1 cut(s)	1272
TseI	GCWGC	3 cut(s)	143, 497, 1012
Tsp45I	GTSAC	1 cut(s)	1272
TspDTI	ATGAA	3 cut(s)	418, 672, 706
TspRI	CASTG	4 cut(s)	507, 574, 936, 993
Van91I	CCANNNNNTGG	1 cut(s)	1055
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	3 cut(s)	317, 605, 1046
XapI	RAATTY	4 cut(s)	584, 617, 1074, 1138
XceI	RCATGY	4 cut(s)	135, 405, 614, 1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	2 cut(s)	725, 1199
XmnI	GAANNNNTTC	2 cut(s)	104, 1077
XspI	CTAG	6 cut(s)	44, 65, 161, 179, 686, 1083
ZrmI	AGTACT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.