Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003306

Physical Location & Seq

Genomic Coordinates Forward (+)

58588393 .. 58595904

Gene Structure 7512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGAAGTGCACGGCTGACACTAGCCTCCACTCACGGCGCATTTTAGCAATCTTCTCTTCTCCCCCATCGTCATCAATCTCTCTCTTTTTTCACTCTCCGTCGCCATCATCAGATCGTTTTCCGCCTCCGCATTTTCCACAGTCAGCTGGAAAGTTCTCTGCGTCGAGTTTTGGACAAGGTTTCTATAAGTTTGCTATGCGGGGTCGTCATGTTGATGCCTACTCGGCGTACAAGCGTGTCACGTCGAGGGATGCTGAGGCTTATGATAGAGAAGAAGACTCAGCTGAACAACTATTGAGTGGCAAAGATCTTGGAAACCCTTCATGGAGACGTTCTTTTCCCCATATGCTTGTAGCGGCTCTTTCTTCATTCTTATTTGGCTACCATCTCGGAGTGGTTAATGAAACACTAGATAGCATCTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTCAGTACGTGTTTAGGGGCTGCTTTCGTTGGATCTCTATTTAGTGGCTGGATTCTAGATGGAGTTGGGCATCGAAGGGCATTCCAACTGTGTGCGCTTCCGATGATAATCGGTGCGTCGATGAGTGCAACGACTCACAGCCTATGGGGCATGATTCTAGGGCGGATATTTGTTGGAACTGGGATGGGCATTGGTCCTCCTGTTGCTGCTCTCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGTACATTTGGTAGCGTCACGCAAATTGCTACATGTCTTGGATTGATGGGGGCTCTATTCATTGGACTTCCTTCCAAGGATATAGTGGGTTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCCGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCACTGGCTTTTCAAGAGAGGAAGAGGCACTGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGGAGCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAAAGAGGGGATGAATTGGAGACAGTAAAGTTCTCAGAGCTACTGTATGGCCGCCATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACTGTCTTTAAAAGCTTCGGTGTGCCTTCAGATATTGCAAATGTATGTGTCGGAGTTGCAAATCTATCAGGGTCAATTGTTGCAATGATATTGATGGATAAGCTTGGAAGAAGGGTGCTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCAATGAGTCTTCAAGTAAGTGGAGCAAGTTCTTATACATCAGGATCTGGAGCACTGAGTCTATCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTTGGAGCTGGTCCAGTGCCTAGTCTCCTACTATCAGAAATTCTTCCCAGCCGTATTAGAGCGAAGGCCATGGCAGTTTGCATGGCTGTGCATTGGGTGGTAAACTTCTTTGTTGGTCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTTCTGTATACAATCTTTGTAAAGGTTCTTCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

525

Amino Acids

56.52

Weight (kDa)

9.0

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	116 - 521	2.9e-84	Sugar (and other) transporter
MFS_1	PF07690	120 - 492	1.3e-19	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79820 AT1G79820 AT1G79820 AT1G79820 AT1G79820
fragaria_vesca	FvH4_6g31830
malus_domestica	MD09G1209000.v1.1 MD17G1190600.v1.1
prunus_persica	Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139081
rosa_laevigata	RLG00000019789
rosa_roxburghii	Rroxscaffold_2G00105690 Rroxscaffold_3G00260160 Rroxscaffold_3G00260170
rosa_samantha	Rh1AG411900 Rh2AG404700 Rh2BG414700 Rh2CG391000 Rh2DG424400
rosa_wichuraiana	Rw2G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1070, 1544
AciI	CCGC	7 cut(s)	122, 128, 199, 356, 631, 811, 1042
AclWI	GGATC	2 cut(s)	508, 1330
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	3 cut(s)	929, 962, 1419
AcuI	CTGAAG	3 cut(s)	936, 942, 1140
AfaI	GTAC	3 cut(s)	230, 475, 718
AflIII	ACRYGT	3 cut(s)	476, 746, 955
AgsI	TTSAA	4 cut(s)	898, 1051, 1292, 1568
AjiI	CACGTC	1 cut(s)	243
Alw21I	GWGCWC	3 cut(s)	11, 955, 1333
Alw26I	GTCTC	3 cut(s)	322, 1004, 1409
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	2 cut(s)	508, 1330
AlwNI	CAGNNNCTG	1 cut(s)	1325
AoxI	GGCC	3 cut(s)	1039, 1446, 1529
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	4 cut(s)	488, 674, 842, 1357
ApoI	RAATTY	3 cut(s)	929, 962, 1419
Asp700I	GAANNNNTTC	3 cut(s)	319, 449, 1422
AspLEI	GCGC	2 cut(s)	39, 565
AspS9I	GGNCC	3 cut(s)	662, 1391, 1529
AsuHPI	GGTGA	1 cut(s)	690
AvaII	GGWCC	2 cut(s)	662, 1391
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	1 cut(s)	1548
BbsI	GAAGAC	2 cut(s)	282, 1280
Bbv12I	GWGCWC	3 cut(s)	11, 955, 1333
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	475, 661, 829, 1344
BccI	CCATC	7 cut(s)	73, 112, 393, 521, 646, 754, 1216
BceAI	ACGGC	4 cut(s)	27, 50, 830, 1416
BcoDI	GTCTC	3 cut(s)	322, 1004, 1409
BfaI	CTAG	5 cut(s)	21, 410, 524, 626, 1401
BglI	GCCNNNNNGGC	2 cut(s)	224, 615
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	6 cut(s)	357, 489, 675, 843, 1042, 1358
BlsI	GCNGC	6 cut(s)	358, 490, 676, 844, 1043, 1359
Bme18I	GGWCC	2 cut(s)	662, 1391
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	662, 1391, 1529
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	4 cut(s)	205, 241, 426, 547
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	2 cut(s)	282, 1280
BpmI	CTGGAG	2 cut(s)	1347, 1538
Bpu10I	CCTNAGC	2 cut(s)	255, 456
BsaAI	YACGTR	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	430, 789, 1449
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bse1I	ACTGG	4 cut(s)	652, 893, 1270, 1394
Bse3DI	GCAATG	2 cut(s)	975, 1218
Bse8I	GATNNNNATC	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	430, 789, 1449
BseGI	GGATG	3 cut(s)	256, 657, 1006
BseJI	GATNNNNATC	1 cut(s)	575
BseMI	GCAATG	2 cut(s)	975, 1218
BseMII	CTCAG	4 cut(s)	246, 294, 1038, 1325
BseNI	ACTGG	4 cut(s)	652, 893, 1270, 1394
BseRI	GAGGAG	2 cut(s)	963, 1114
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	4 cut(s)	475, 661, 829, 1344
BseYI	CCCAGC	1 cut(s)	1427
BsgI	GTGCAG	1 cut(s)	894
BshFI	GGCC	3 cut(s)	1041, 1448, 1531
BsiHKAI	GWGCWC	3 cut(s)	11, 955, 1333
BsmAI	GTCTC	3 cut(s)	322, 1004, 1409
BsmBI	CGTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	1041, 1448, 1531
Bsp1286I	GDGCHC	4 cut(s)	11, 769, 955, 1333
Bsp143I	GATC	4 cut(s)	112, 307, 500, 1322
Bsp19I	CCATGG	1 cut(s)	1449
BspACI	CCGC	7 cut(s)	122, 128, 199, 356, 631, 811, 1042
BspANI	GGCC	3 cut(s)	1041, 1448, 1531
BspCNI	CTCAG	4 cut(s)	247, 293, 1037, 1326
BspPI	GGATC	2 cut(s)	508, 1330
BsrDI	GCAATG	2 cut(s)	975, 1218
BsrI	ACTGG	4 cut(s)	652, 893, 1270, 1394
BssECI	CCNNGG	3 cut(s)	430, 789, 1449
BssMI	GATC	4 cut(s)	112, 307, 500, 1322
BssNAI	GTATAC	1 cut(s)	1545
BssT1I	CCWWGG	3 cut(s)	430, 789, 1449
Bst1107I	GTATAC	1 cut(s)	1545
Bst4CI	ACNGT	6 cut(s)	141, 558, 835, 1015, 1035, 1132
Bst6I	CTCTTC	2 cut(s)	61, 901
BstBAI	YACGTR	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	852, 1355
BstDEI	CTNAG	5 cut(s)	255, 280, 456, 1024, 1334
BstDSI	CCRYGG	1 cut(s)	1449
BstF5I	GGATG	3 cut(s)	256, 657, 1006
BstHHI	GCGC	2 cut(s)	39, 565
BstKTI	GATC	4 cut(s)	115, 310, 503, 1325
BstMAI	GTCTC	3 cut(s)	322, 1004, 1409
BstMBI	GATC	4 cut(s)	112, 307, 500, 1322
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 615, 851
BstNSI	RCATGY	3 cut(s)	750, 959, 1357
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	475, 661, 829, 1344
BstV2I	GAAGAC	2 cut(s)	282, 1280
BstX2I	RGATCY	3 cut(s)	307, 500, 1322
BstYI	RGATCY	3 cut(s)	307, 500, 1322
BstZ17I	GTATAC	1 cut(s)	1545
BsuRI	GGCC	3 cut(s)	1041, 1448, 1531
BtgI	CCRYGG	1 cut(s)	1449
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	256, 657, 1006
BtsI	GCAGTG	1 cut(s)	1281
BtsIMutI	CAGTG	5 cut(s)	886, 912, 1281, 1331, 1401
Cac8I	GCNNGC	2 cut(s)	852, 1355
CaiI	CAGNNNCTG	1 cut(s)	1325
CfoI	GCGC	2 cut(s)	39, 565
Cfr13I	GGNCC	3 cut(s)	662, 1391, 1529
CseI	GACGC	3 cut(s)	150, 573, 718
Csp6I	GTAC	3 cut(s)	229, 474, 717
CviQI	GTAC	3 cut(s)	229, 474, 717
DdeI	CTNAG	5 cut(s)	255, 280, 456, 1024, 1334
DpnI	GATC	4 cut(s)	114, 309, 502, 1324
DpnII	GATC	4 cut(s)	112, 307, 500, 1322
DraI	TTTAAA	1 cut(s)	1138
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	2 cut(s)	61, 901
EarI	CTCTTC	2 cut(s)	61, 901
EciI	GGCGGA	2 cut(s)	111, 646
Eco130I	CCWWGG	3 cut(s)	430, 789, 1449
Eco24I	GRGCYC	1 cut(s)	769
Eco47I	GGWCC	2 cut(s)	662, 1391
Eco57I	CTGAAG	3 cut(s)	936, 942, 1140
EcoT14I	CCWWGG	3 cut(s)	430, 789, 1449
EcoT38I	GRGCYC	1 cut(s)	769
ErhI	CCWWGG	3 cut(s)	430, 789, 1449
Esp3I	CGTCTC	1 cut(s)	322
FauI	CCCGC	2 cut(s)	192, 804
FauNDI	CATATG	1 cut(s)	345
FblI	GTMKAC	2 cut(s)	1070, 1544
Fnu4HI	GCNGC	6 cut(s)	357, 489, 675, 843, 1042, 1358
FokI	GGATG	3 cut(s)	263, 664, 1013
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	6 cut(s)	357, 489, 675, 843, 1042, 1358
FspBI	CTAG	5 cut(s)	21, 410, 524, 626, 1401
GlaI	GCGC	2 cut(s)	38, 564
GluI	GCNGC	6 cut(s)	357, 489, 675, 843, 1042, 1358
GsaI	CCCAGC	1 cut(s)	1431
GsuI	CTGGAG	2 cut(s)	1347, 1538
HaeIII	GGCC	3 cut(s)	1041, 1448, 1531
HgaI	GACGC	3 cut(s)	150, 573, 718
HhaI	GCGC	2 cut(s)	39, 565
Hin6I	GCGC	2 cut(s)	37, 563
HinP1I	GCGC	2 cut(s)	37, 563
HindIII	AAGCTT	2 cut(s)	1141, 1229
HinfI	GANTC	8 cut(s)	278, 445, 520, 601, 622, 880, 1285, 1336
HphI	GGTGA	1 cut(s)	690
Hpy166II	GTNNAC	4 cut(s)	9, 1071, 1483, 1545
Hpy188I	TCNGA	9 cut(s)	112, 392, 570, 691, 991, 1027, 1159, 1181, 1417
Hpy188III	TCNNGA	5 cut(s)	425, 524, 898, 1320, 1326
Hpy8I	GTNNAC	4 cut(s)	9, 1071, 1483, 1545
Hpy99I	CGWCG	4 cut(s)	103, 166, 247, 589
HpyAV	CCTTC	7 cut(s)	330, 460, 537, 795, 1164, 1233, 1438
HpyCH4III	ACNGT	6 cut(s)	141, 558, 835, 1015, 1035, 1132
HpyCH4IV	ACGT	3 cut(s)	242, 331, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 615, 851
HpyF3I	CTNAG	5 cut(s)	255, 280, 456, 1024, 1334
HpySE526I	ACGT	3 cut(s)	242, 331, 476
HspAI	GCGC	2 cut(s)	37, 563
Kzo9I	GATC	4 cut(s)	112, 307, 500, 1322
LmnI	GCTCC	4 cut(s)	950, 1301, 1328, 1385
Lsp1109I	GCAGC	4 cut(s)	475, 661, 829, 1344
LweI	GCATC	4 cut(s)	205, 241, 426, 547
MaeI	CTAG	5 cut(s)	21, 410, 524, 626, 1401
MaeII	ACGT	3 cut(s)	242, 331, 476
MaeIII	GTNAC	2 cut(s)	238, 730
MalI	GATC	4 cut(s)	114, 309, 502, 1324
MboI	GATC	4 cut(s)	112, 307, 500, 1322
MfeI	CAATTG	1 cut(s)	1203
MflI	RGATCY	3 cut(s)	307, 500, 1322
MhlI	GDGCHC	4 cut(s)	11, 769, 955, 1333
MluCI	AATT	8 cut(s)	738, 929, 962, 977, 1004, 1203, 1419, 1573
MlyI	GAGTC	5 cut(s)	272, 595, 889, 1294, 1345
MmeI	TCCRAC	4 cut(s)	478, 577, 622, 1159
MroXI	GAANNNNTTC	3 cut(s)	319, 449, 1422
MseI	TTAA	3 cut(s)	399, 960, 1137
MslI	CAYNNNNRTG	3 cut(s)	213, 1274, 1466
MspA1I	CMGCKG	3 cut(s)	146, 284, 1093
MunI	CAATTG	1 cut(s)	1203
Mva1269I	GAATGC	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	224, 615, 851
NcoI	CCATGG	1 cut(s)	1449
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	4 cut(s)	112, 307, 500, 1322
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	238, 730
NspI	RCATGY	3 cut(s)	750, 959, 1357
PaeI	GCATGC	1 cut(s)	1357
PciI	ACATGT	2 cut(s)	746, 955
PctI	GAATGC	1 cut(s)	548
PdmI	GAANNNNTTC	3 cut(s)	319, 449, 1422
PfeI	GAWTC	3 cut(s)	445, 520, 622
PkrI	GCNGC	6 cut(s)	358, 490, 676, 844, 1043, 1359
PleI	GAGTC	5 cut(s)	272, 595, 888, 1293, 1344
PpsI	GAGTC	5 cut(s)	272, 595, 888, 1293, 1344
Ppu21I	YACGTR	1 cut(s)	477
PscI	ACATGT	2 cut(s)	746, 955
PspFI	CCCAGC	1 cut(s)	1427
PspPI	GGNCC	3 cut(s)	662, 1391, 1529
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PstNI	CAGNNNCTG	1 cut(s)	1325
PsuI	RGATCY	3 cut(s)	307, 500, 1322
PvuII	CAGCTG	3 cut(s)	146, 284, 1093
RsaI	GTAC	3 cut(s)	230, 475, 718
RsaNI	GTAC	3 cut(s)	229, 474, 717
RseI	CAYNNNNRTG	3 cut(s)	213, 1274, 1466
SaqAI	TTAA	3 cut(s)	399, 960, 1137
SatI	GCNGC	6 cut(s)	357, 489, 675, 843, 1042, 1358
Sau3AI	GATC	4 cut(s)	112, 307, 500, 1322
Sau96I	GGNCC	3 cut(s)	662, 1391, 1529
SchI	GAGTC	5 cut(s)	272, 595, 889, 1294, 1345
SduI	GDGCHC	4 cut(s)	11, 769, 955, 1333
SfaNI	GCATC	4 cut(s)	205, 241, 426, 547
SinI	GGWCC	2 cut(s)	662, 1391
SmiMI	CAYNNNNRTG	3 cut(s)	213, 1274, 1466
SphI	GCATGC	1 cut(s)	1357
Sse9I	AATT	8 cut(s)	738, 929, 962, 977, 1004, 1203, 1419, 1573
SsiI	CCGC	7 cut(s)	122, 128, 199, 356, 631, 811, 1042
SspMI	CTAG	5 cut(s)	21, 410, 524, 626, 1401
StyI	CCWWGG	3 cut(s)	430, 789, 1449
TaaI	ACNGT	6 cut(s)	141, 558, 835, 1015, 1035, 1132
TaiI	ACGT	3 cut(s)	245, 334, 479
TaqI	TCGA	4 cut(s)	164, 245, 541, 587
TasI	AATT	8 cut(s)	738, 929, 962, 977, 1004, 1203, 1419, 1573
TauI	GCSGC	2 cut(s)	359, 1044
TfiI	GAWTC	3 cut(s)	445, 520, 622
Tru1I	TTAA	3 cut(s)	399, 960, 1137
Tru9I	TTAA	3 cut(s)	399, 960, 1137
TscAI	CASTG	5 cut(s)	893, 919, 1281, 1338, 1401
TseFI	GTSAC	2 cut(s)	238, 730
TseI	GCWGC	4 cut(s)	488, 674, 842, 1357
Tsp45I	GTSAC	2 cut(s)	238, 730
TspDTI	ATGAA	7 cut(s)	17, 312, 357, 417, 763, 1017, 1051
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	5 cut(s)	893, 919, 1281, 1338, 1401
VneI	GTGCAC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	662, 1391
XapI	RAATTY	3 cut(s)	929, 962, 1419
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	3 cut(s)	750, 959, 1357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	796
XmiI	GTMKAC	2 cut(s)	1070, 1544
XmnI	GAANNNNTTC	3 cut(s)	319, 449, 1422
XspI	CTAG	5 cut(s)	21, 410, 524, 626, 1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.