Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003306

Physical Location & Seq

Genomic Coordinates Reverse (-)

4817423 .. 4818007

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTGTATTCTATTTCTCTTCGACTGTCTTTAAAAGCTTTGGGGTGCCTTGAGATCTGGCAAACATGTGTTGGGATCGCGAATCTATCTGGGTCAGTTGTTGCAATGATCTTGATGGATAAGGTTGGAAGAAAGGTGCTTCTTCTTGGAAGTTTTTCTGGCATGGCAGTGGCAATGGGTCTTCAAGTAACTGGAGCAAGTTCTTATGCATCGGGATCTGGAGCATTGAGTCTATCGGTTGGTGGCATGCTGCTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009925 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016323 GO:0016324 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0045178 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

87

Amino Acids

8.74

Weight (kDa)

9.24

Isoelectric Point (pI)

16.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79820 AT1G79820 AT1G79820 AT1G79820 AT1G79820
fragaria_vesca	FvH4_6g31830
malus_domestica	MD09G1209000.v1.1 MD17G1190600.v1.1
prunus_persica	Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139081
rosa_laevigata	RLG00000019789
rosa_roxburghii	Rroxscaffold_2G00105690 Rroxscaffold_3G00260160 Rroxscaffold_3G00260170
rosa_samantha	Rh1AG411900 Rh2AG404700 Rh2BG414700 Rh2CG391000 Rh2DG424400
rosa_wichuraiana	Rw2G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	80
AclWI	GGATC	2 cut(s)	83, 223
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	2 cut(s)	83, 223
ApeKI	GCWGC	2 cut(s)	250, 253
Asp700I	GAANNNNTTC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	237, 240
BccI	CCATC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	251, 254
BlsI	GCNGC	2 cut(s)	252, 255
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	213, 240
BpuEI	CTTGAG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	111, 180
BseMI	GCAATG	2 cut(s)	111, 180
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	237, 240
Bsh1236I	CGCG	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	54, 75, 108, 215
Bsp68I	TCGCGA	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	83, 223
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	111, 180
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	4 cut(s)	54, 75, 108, 215
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	4 cut(s)	57, 78, 111, 218
BstMBI	GATC	4 cut(s)	54, 75, 108, 215
BstNSI	RCATGY	2 cut(s)	69, 250
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	237, 240
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	54, 215
BstYI	RGATCY	2 cut(s)	54, 215
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
BtuMI	TCGCGA	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	248
CviAII	CATG	3 cut(s)	66, 163, 247
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
DpnI	GATC	4 cut(s)	56, 77, 110, 217
DpnII	GATC	4 cut(s)	54, 75, 108, 215
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	211
FaeI	CATG	3 cut(s)	69, 166, 250
FaiI	YATR	4 cut(s)	67, 164, 207, 248
FatI	CATG	3 cut(s)	65, 162, 246
Fnu4HI	GCNGC	2 cut(s)	251, 254
Fsp4HI	GCNGC	2 cut(s)	251, 254
GluI	GCNGC	2 cut(s)	251, 254
GsuI	CTGGAG	2 cut(s)	213, 240
Hin1II	CATG	3 cut(s)	69, 166, 250
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	82, 229
Hpy188III	TCNNGA	4 cut(s)	79, 112, 213, 219
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	104, 209
Hsp92II	CATG	3 cut(s)	69, 166, 250
Kzo9I	GATC	4 cut(s)	54, 75, 108, 215
LmnI	GCTCC	2 cut(s)	194, 221
LpnPI	CCDG	5 cut(s)	43, 75, 144, 177, 204
Lsp1109I	GCAGC	2 cut(s)	237, 240
LweI	GCATC	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	56, 77, 110, 217
MboI	GATC	4 cut(s)	54, 75, 108, 215
MboII	GAAGA	4 cut(s)	11, 134, 141, 173
MflI	RGATCY	2 cut(s)	54, 215
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	80
NdeII	GATC	4 cut(s)	54, 75, 108, 215
NlaIII	CATG	3 cut(s)	69, 166, 250
NlaIV	GGNNCC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	69, 250
PaeI	GCATGC	1 cut(s)	250
PciI	ACATGT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	252, 255
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PscI	ACATGT	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	54, 215
RruI	TCGCGA	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	251, 254
Sau3AI	GATC	4 cut(s)	54, 75, 108, 215
SchI	GAGTC	1 cut(s)	238
SetI	ASST	3 cut(s)	40, 126, 138
SfaNI	GCATC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	250, 253
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	2 cut(s)	69, 250
XmnI	GAANNNNTTC	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.