MD09G1209000.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
20115028 .. 20122776
7749 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1209000.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGCGGGGTCGTCATGTCGATGCCTACTCGGCATACAAGCGTGTGGCGTCCAAGGACCATATCAATGCTTATGATAGAGAAGAAAGTGCAGTAGGTTTAGTGAATGGAAAAGGTATTGGAAACCCTTCATGGAAGCGCTCCTTGCCGCATATGCTTGTGGCAGCTCTTTCTTCGTTCCTATATGGCTACCATCTCGGAGTGGTTAACGAGACACTAGATAGCATTTCTTTGGACCTTGGCTTCAGTGGGAATCCTTTGGCAAAGGGTCTAGTAGTGAGTACATGTTTAGGTGGTGCTTTTGTTGGATCTCTATTTAGTGGTTGGATTCTAGATGGAGTGGGGCATCGAAGGGCATTCCAGATGTGTGCATTGCCGATGATAATCGGTGCATCAATGAGTGCAACAACCAAAAGTCTATGGGGCATGCTTCTAGGGAGGATATTCGTTGGAACTGGGATGGGAATTGGCCCACCTGTTGCTGCTATCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGTGCTTTTGGGAGCTTCACACAAATTTCTACGTGTCTTGGACTTATGGGGTCTCTCTTTATTGGACTCCCTGCCAAGGATATAGTGGGTTGGTGGCGAGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTAGCTGTTTGCATGGAGTTCTGTGCAGAGAGTCCTCAGTGGCTTTTCAAGAGAGGAAGAGGTACTGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGCAGCACATGTTAAATTTGCAATGGCAGAACTGTCAAAGTCTGACAGGGGGGATGAACTAGAGACAATAAAGTTTTCAGAGCTACTGTATGGCCGACATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTGTTCTATTTCTCTTCAACTGTCTTTAAAAGCTTTGGGGTGCCTTCAGATCTGGCAAACACATGTGTTGGAATTGCAAATCTGTCGGGGTCAATTCTTGCAATGATCCTGATGGATAAGCTTGGAAGAAAGGTACTTCTTCTTGGAAGCTTTTCTGGCATGGCAGTGGCAATGGGTCTTCAAGTAACTGGAGCAAGTTCTTATACGTCGGGATCTGGAGCATTGAGTCTATCTGTTGGCGGCATGCTGCTGTTTGTGTTGATGTTTGCTCTTGGAGCTGGTCCAGTGCCTGGTCTTCTCCTTTCAGAAATTCTTCCTGGCCGTATTAGGGCAAAAGCAATGGCAGTTTGCATGGCCGTGCATTGGGTGATAAATTTCTTTGTTGGCCTGTTGTTTTTACCCTTGCTGGAGCAAATTGGGCCACAAATTCTGTATACAGTCTTTGCTACCTTTTGTTTACTGGCTGTTGTTTTTGTGAAGAGAAATGTAATAGAAACAAAAGGAAAGTCCCTCCAAGAAATTGAAATTGCACTTATTCCGCCTCAATGA

Protein Analysis

488

Amino Acids

52.04

Weight (kDa)

8.98

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 51 - 481 3.2e-90 Sugar (and other) transporter
MFS_1 PF07690 55 - 394 7.1e-19 Major Facilitator Superfamily
MFS_1 PF07690 324 - 467 4.7e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 1205
AccI GTMKAC 2 cut(s) 875, 1349
AciI CCGC 4 cut(s) 4, 146, 1155, 1454
AclWI GGATC 3 cut(s) 313, 1015, 1135
AcoI YGGCCR 3 cut(s) 844, 1234, 1269
AcsI RAATTY 6 cut(s) 543, 734, 767, 1224, 1288, 1341
AcuI CTGAAG 4 cut(s) 226, 741, 747, 945
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 3 cut(s) 280, 718, 1050
AfeI AGCGCT 1 cut(s) 137
AfiI CCNNNNNNNGG 4 cut(s) 595, 1205, 1243, 1278
AflIII ACRYGT 4 cut(s) 281, 551, 760, 977
AgsI TTSAA 5 cut(s) 703, 856, 933, 1097, 1439
AjnI CCWGG 2 cut(s) 1204, 1231
Alw26I GTCTC 3 cut(s) 203, 576, 809
AlwI GGATC 3 cut(s) 313, 1015, 1135
AlwNI CAGNNNCTG 1 cut(s) 1205
Aor51HI AGCGCT 1 cut(s) 137
AoxI GGCC 6 cut(s) 466, 844, 1234, 1269, 1300, 1334
ApeKI GCWGC 5 cut(s) 161, 479, 647, 755, 1162
ApoI RAATTY 6 cut(s) 543, 734, 767, 1224, 1288, 1341
ArsI GACNNNNNNTTYG 2 cut(s) 1406, 1438
Asp700I GAANNNNTTC 3 cut(s) 124, 1066, 1227
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 5 cut(s) 55, 232, 467, 1196, 1334
AsuHPI GGTGA 2 cut(s) 495, 1294
AsuNHI GCTAGC 1 cut(s) 655
AvaII GGWCC 3 cut(s) 55, 232, 1196
BanI GGYRCC 1 cut(s) 955
BbsI GAAGAC 2 cut(s) 1085, 1202
BbvI GCAGC 5 cut(s) 173, 466, 634, 767, 1149
BccI CCATC 4 cut(s) 198, 326, 451, 1021
BceAI ACGGC 2 cut(s) 1221, 1256
BcgI CGANNNNNNTGC 2 cut(s) 981, 1015
BciT130I CCWGG 2 cut(s) 1206, 1233
BcoDI GTCTC 3 cut(s) 203, 576, 809
BfaI CTAG 6 cut(s) 215, 269, 329, 431, 656, 812
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 964
BisI GCNGC 7 cut(s) 146, 162, 480, 648, 756, 1156, 1163
BlsI GCNGC 7 cut(s) 147, 163, 481, 649, 757, 1157, 1164
Bme1390I CCNGG 2 cut(s) 1206, 1233
Bme18I GGWCC 3 cut(s) 55, 232, 1196
BmgT120I GGNCC 5 cut(s) 55, 232, 467, 1196, 1334
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 2 cut(s) 1206, 1233
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 3 cut(s) 10, 352, 398
BmtI GCTAGC 1 cut(s) 659
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 1085, 1202
BpmI CTGGAG 3 cut(s) 1125, 1152, 1343
BsaAI YACGTR 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 51, 235, 594
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 1205, 1243, 1278
Bse1I ACTGG 4 cut(s) 457, 1108, 1199, 1380
Bse3DI GCAATG 5 cut(s) 368, 780, 1023, 1092, 1260
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 2 cut(s) 1206, 1233
BseDI CCNNGG 3 cut(s) 51, 235, 594
BseGI GGATG 2 cut(s) 462, 811
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 4 cut(s) 595, 1205, 1243, 1278
BseMI GCAATG 5 cut(s) 368, 780, 1023, 1092, 1260
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 4 cut(s) 457, 1108, 1199, 1380
BseXI GCAGC 5 cut(s) 173, 466, 634, 767, 1149
BsgI GTGCAG 2 cut(s) 108, 699
BshFI GGCC 6 cut(s) 468, 846, 1236, 1271, 1302, 1336
BshNI GGYRCC 1 cut(s) 955
BslFI GGGAC 1 cut(s) 1408
BslI CCNNNNNNNGG 4 cut(s) 595, 1205, 1243, 1278
BsmAI GTCTC 3 cut(s) 203, 576, 809
BsmFI GGGAC 1 cut(s) 1408
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 6 cut(s) 468, 846, 1236, 1271, 1302, 1336
Bso31I GGTCTC 1 cut(s) 576
Bsp143I GATC 4 cut(s) 305, 964, 1020, 1127
BspACI CCGC 4 cut(s) 4, 146, 1155, 1454
BspANI GGCC 6 cut(s) 468, 846, 1236, 1271, 1302, 1336
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 957
BspMAI CTGCAG 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 659
BspPI GGATC 3 cut(s) 313, 1015, 1135
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 5 cut(s) 368, 780, 1023, 1092, 1260
BsrI ACTGG 4 cut(s) 457, 1108, 1199, 1380
BssECI CCNNGG 3 cut(s) 51, 235, 594
BssMI GATC 4 cut(s) 305, 964, 1020, 1127
BssNAI GTATAC 1 cut(s) 1350
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 3 cut(s) 51, 235, 594
Bst1107I GTATAC 1 cut(s) 1350
Bst2UI CCWGG 2 cut(s) 1206, 1233
Bst4CI ACNGT 5 cut(s) 640, 786, 840, 937, 1354
Bst6I CTCTTC 3 cut(s) 706, 934, 1388
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 425, 657, 1160
BstDEI CTNAG 1 cut(s) 690
BstF5I GGATG 2 cut(s) 462, 811
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 4 cut(s) 308, 967, 1023, 1130
BstMAI GTCTC 3 cut(s) 203, 576, 809
BstMBI GATC 4 cut(s) 305, 964, 1020, 1127
BstMWI GCNNNNNNNGC 7 cut(s) 29, 142, 151, 656, 1071, 1190, 1333
BstNI CCWGG 2 cut(s) 1206, 1233
BstNSI RCATGY 5 cut(s) 285, 427, 764, 981, 1162
BstSCI CCNGG 2 cut(s) 1204, 1231
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 5 cut(s) 173, 466, 634, 767, 1149
BstV2I GAAGAC 2 cut(s) 1085, 1202
BstX2I RGATCY 3 cut(s) 305, 964, 1127
BstYI RGATCY 3 cut(s) 305, 964, 1127
BstZ17I GTATAC 1 cut(s) 1350
BsuRI GGCC 6 cut(s) 468, 846, 1236, 1271, 1302, 1336
BtsCI GGATG 2 cut(s) 462, 811
BtsI GCAGTG 2 cut(s) 657, 1086
BtsIMutI CAGTG 5 cut(s) 250, 657, 698, 1086, 1206
Cac8I GCNNGC 3 cut(s) 425, 657, 1160
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 5 cut(s) 55, 232, 467, 1196, 1334
CseI GACGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 279, 717, 1049
CviQI GTAC 3 cut(s) 279, 717, 1049
DdeI CTNAG 1 cut(s) 690
DpnI GATC 4 cut(s) 307, 966, 1022, 1129
DpnII GATC 4 cut(s) 305, 964, 1020, 1127
DraI TTTAAA 1 cut(s) 943
EaeI YGGCCR 3 cut(s) 844, 1234, 1269
Eam1104I CTCTTC 3 cut(s) 706, 934, 1388
EarI CTCTTC 3 cut(s) 706, 934, 1388
EciI GGCGGA 1 cut(s) 1443
Eco130I CCWWGG 3 cut(s) 51, 235, 594
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 3 cut(s) 55, 232, 1196
Eco47III AGCGCT 1 cut(s) 137
Eco57I CTGAAG 4 cut(s) 226, 741, 747, 945
EcoRII CCWGG 2 cut(s) 1204, 1231
EcoT14I CCWWGG 3 cut(s) 51, 235, 594
ErhI CCWWGG 3 cut(s) 51, 235, 594
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 508, 540
FaqI GGGAC 1 cut(s) 1408
FauNDI CATATG 1 cut(s) 150
FblI GTMKAC 2 cut(s) 875, 1349
Fnu4HI GCNGC 7 cut(s) 146, 162, 480, 648, 756, 1156, 1163
FokI GGATG 2 cut(s) 469, 818
Fsp4HI GCNGC 7 cut(s) 146, 162, 480, 648, 756, 1156, 1163
FspBI CTAG 6 cut(s) 215, 269, 329, 431, 656, 812
GlaI GCGC 1 cut(s) 137
GluI GCNGC 7 cut(s) 146, 162, 480, 648, 756, 1156, 1163
GsuI CTGGAG 3 cut(s) 1125, 1152, 1343
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 6 cut(s) 468, 846, 1236, 1271, 1302, 1336
HgaI GACGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 3 cut(s) 946, 1034, 1063
HinfI GANTC 5 cut(s) 250, 325, 585, 685, 1141
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 2 cut(s) 495, 1294
Hpy166II GTNNAC 4 cut(s) 205, 876, 1350, 1373
Hpy188I TCNGA 6 cut(s) 197, 496, 796, 832, 964, 1222
Hpy188III TCNNGA 6 cut(s) 329, 358, 703, 1024, 1125, 1131
Hpy8I GTNNAC 4 cut(s) 205, 876, 1350, 1373
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 3 cut(s) 135, 342, 969
HpyCH4III ACNGT 5 cut(s) 640, 786, 840, 937, 1354
HpyCH4IV ACGT 2 cut(s) 551, 1121
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 142, 151, 656, 1071, 1190, 1333
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 2 cut(s) 551, 1121
Hsp92I GRCGYC 1 cut(s) 47
HspAI GCGC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 305, 964, 1020, 1127
LmnI GCTCC 7 cut(s) 143, 531, 752, 1106, 1133, 1190, 1324
Lsp1109I GCAGC 5 cut(s) 173, 466, 634, 767, 1149
LweI GCATC 3 cut(s) 10, 352, 398
MaeI CTAG 6 cut(s) 215, 269, 329, 431, 656, 812
MaeII ACGT 2 cut(s) 551, 1121
MaeIII GTNAC 1 cut(s) 1099
MalI GATC 4 cut(s) 307, 966, 1022, 1129
MboI GATC 4 cut(s) 305, 964, 1020, 1127
MflI RGATCY 3 cut(s) 305, 964, 1127
MlyI GAGTC 3 cut(s) 579, 694, 1150
MmeI TCCRAC 4 cut(s) 283, 302, 427, 964
MnlI CCTC 5 cut(s) 429, 699, 701, 707, 1436
MroXI GAANNNNTTC 3 cut(s) 124, 1066, 1227
MseI TTAA 3 cut(s) 204, 765, 942
MslI CAYNNNNRTG 4 cut(s) 18, 63, 1079, 1271
MspA1I CMGCKG 1 cut(s) 898
MspR9I CCNGG 2 cut(s) 1206, 1233
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 2 cut(s) 1206, 1233
MwoI GCNNNNNNNGC 7 cut(s) 29, 142, 151, 656, 1071, 1190, 1333
NdeI CATATG 1 cut(s) 150
NdeII GATC 4 cut(s) 305, 964, 1020, 1127
NheI GCTAGC 1 cut(s) 655
NlaIV GGNNCC 1 cut(s) 957
NmeAIII GCCGAG 1 cut(s) 8
NspI RCATGY 5 cut(s) 285, 427, 764, 981, 1162
PaeI GCATGC 2 cut(s) 427, 1162
PciI ACATGT 3 cut(s) 281, 760, 977
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 3 cut(s) 124, 1066, 1227
PfeI GAWTC 2 cut(s) 250, 325
PflMI CCANNNNNTGG 1 cut(s) 1205
PkrI GCNGC 7 cut(s) 147, 163, 481, 649, 757, 1157, 1164
PleI GAGTC 3 cut(s) 579, 693, 1149
PpsI GAGTC 3 cut(s) 579, 693, 1149
Ppu21I YACGTR 1 cut(s) 552
PscI ACATGT 3 cut(s) 281, 760, 977
Psp6I CCWGG 2 cut(s) 1204, 1231
PspGI CCWGG 2 cut(s) 1204, 1231
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 5 cut(s) 55, 232, 467, 1196, 1334
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 3 cut(s) 305, 964, 1127
PvuII CAGCTG 1 cut(s) 898
RsaI GTAC 3 cut(s) 280, 718, 1050
RsaNI GTAC 3 cut(s) 279, 717, 1049
RseI CAYNNNNRTG 4 cut(s) 18, 63, 1079, 1271
SaqAI TTAA 3 cut(s) 204, 765, 942
SatI GCNGC 7 cut(s) 146, 162, 480, 648, 756, 1156, 1163
Sau3AI GATC 4 cut(s) 305, 964, 1020, 1127
Sau96I GGNCC 5 cut(s) 55, 232, 467, 1196, 1334
SchI GAGTC 3 cut(s) 579, 694, 1150
ScrFI CCNGG 2 cut(s) 1206, 1233
SfaNI GCATC 3 cut(s) 10, 352, 398
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 3 cut(s) 55, 232, 1196
SmiMI CAYNNNNRTG 4 cut(s) 18, 63, 1079, 1271
SphI GCATGC 2 cut(s) 427, 1162
SsiI CCGC 4 cut(s) 4, 146, 1155, 1454
SspMI CTAG 6 cut(s) 215, 269, 329, 431, 656, 812
StyD4I CCNGG 2 cut(s) 1204, 1231
StyI CCWWGG 3 cut(s) 51, 235, 594
TaaI ACNGT 5 cut(s) 640, 786, 840, 937, 1354
TaiI ACGT 2 cut(s) 554, 1124
TaqI TCGA 2 cut(s) 18, 346
TatI WGTACW 1 cut(s) 278
TauI GCSGC 2 cut(s) 148, 1158
TfiI GAWTC 2 cut(s) 250, 325
Tru1I TTAA 3 cut(s) 204, 765, 942
Tru9I TTAA 3 cut(s) 204, 765, 942
TscAI CASTG 5 cut(s) 250, 657, 698, 1086, 1206
TseI GCWGC 5 cut(s) 161, 479, 647, 755, 1162
TspDTI ATGAA 3 cut(s) 117, 822, 856
TspRI CASTG 5 cut(s) 250, 657, 698, 1086, 1206
Van91I CCANNNNNTGG 1 cut(s) 1205
VpaK11BI GGWCC 3 cut(s) 55, 232, 1196
XapI RAATTY 6 cut(s) 543, 734, 767, 1224, 1288, 1341
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 5 cut(s) 285, 427, 764, 981, 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmiI GTMKAC 2 cut(s) 875, 1349
XmnI GAANNNNTTC 3 cut(s) 124, 1066, 1227
XspI CTAG 6 cut(s) 215, 269, 329, 431, 656, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.