Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003306

Physical Location & Seq

Genomic Coordinates Forward (+)

54554918 .. 54560709

Gene Structure 5792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATCCATCTATCTCGCTTTCGGGTCAAACTGGCTGGATTCAAGATGGAGTTGGGCATCGAAGGGCTTTCCAACCGTGTGTGCTTCCGATAATGATCGGTGCATCGATGAGTGCAACGACTCGCAGCCTATGGGGCATGATTCTAGGGTGGATATTTGTTGGGCCGGGATGGGCATTGGTCCTCCTATTGCTGCTCTCTATGTGTCGAGATTTCACCGGCTTTTGTAAGGGTACATTTGGTAGCGTCACACAAATTGCTACATGTCTTGGATTGATGGGGGCTCTATTCATTGGACTTCCTTCCAAGGATATAGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

107

Amino Acids

11.35

Weight (kDa)

8.51

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79820 AT1G79820 AT1G79820 AT1G79820 AT1G79820
fragaria_vesca	FvH4_6g31830
malus_domestica	MD09G1209000.v1.1 MD17G1190600.v1.1
prunus_persica	Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139081
rosa_laevigata	RLG00000019789
rosa_roxburghii	Rroxscaffold_2G00105690 Rroxscaffold_3G00260160 Rroxscaffold_3G00260170
rosa_samantha	Rh1AG411900 Rh2AG404700 Rh2BG414700 Rh2CG391000 Rh2DG424400
rosa_wichuraiana	Rw2G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	44
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	126, 193
AspS9I	GGNCC	2 cut(s)	164, 181
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	138, 180
BccI	CCATC	4 cut(s)	16, 41, 165, 271
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	146, 322
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	127, 194
BlsI	GCNGC	2 cut(s)	128, 195
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	164, 181
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	67, 113
BpuMI	CCSGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	138, 180
BshFI	GGCC	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	167, 219
BsnI	GGCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	4, 96
BspANI	GGCC	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	4, 96
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	7, 99
BstMBI	GATC	2 cut(s)	4, 96
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	138, 180
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	166
BsuTUI	ATCGAT	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	164, 181
ClaI	ATCGAT	1 cut(s)	107
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	139, 264
CviJI	RGCY	7 cut(s)	36, 68, 129, 166, 222, 284, 321
CviKI_1	RGCY	7 cut(s)	36, 68, 129, 166, 222, 284, 321
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	2 cut(s)	6, 98
DpnII	GATC	2 cut(s)	4, 96
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	142, 267
FaiI	YATR	5 cut(s)	133, 140, 203, 265, 314
FatI	CATG	2 cut(s)	138, 263
Fnu4HI	GCNGC	2 cut(s)	127, 194
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	127, 194
FspBI	CTAG	2 cut(s)	146, 322
GluI	GCNGC	2 cut(s)	127, 194
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	2 cut(s)	167, 219
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	142, 267
HinfI	GANTC	3 cut(s)	40, 121, 142
HpaII	CCGG	2 cut(s)	167, 219
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	44, 209
HpyAV	CCTTC	2 cut(s)	57, 312
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	104, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	142, 267
Kzo9I	GATC	2 cut(s)	4, 96
LpnPI	CCDG	4 cut(s)	18, 22, 180, 232
Lsp1109I	GCAGC	2 cut(s)	138, 180
LweI	GCATC	2 cut(s)	67, 113
MaeI	CTAG	2 cut(s)	146, 322
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	6, 98
MboI	GATC	2 cut(s)	4, 96
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	194
MspI	CCGG	2 cut(s)	167, 219
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	4, 96
NlaIII	CATG	2 cut(s)	142, 267
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	267
PciI	ACATGT	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	40, 142
PkrI	GCNGC	2 cut(s)	128, 195
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PscI	ACATGT	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	164, 181
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SatI	GCNGC	2 cut(s)	127, 194
Sau3AI	GATC	2 cut(s)	4, 96
Sau96I	GGNCC	2 cut(s)	164, 181
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	67, 113
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	255
SspMI	CTAG	2 cut(s)	146, 322
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	61, 107, 208
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	40, 142
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	126, 193
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	146, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.