Rroxscaffold_2G00105690
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
29115286 .. 29122746
7461 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00105690.1

Sequence Viewer

Length: 1518 bp
ATGTCTGCTGGAAAGTTCTCTGCGTCCAGTTTTGGACAAGGTTTCTATAAGTTTGCTATGCGGGGTCGTCATGTTGATGCCTACTCGGCATACAAGCGTGTCACGTCGAGGGATGCTGAGGCTTATGATAGAGAACAAGACTCAGAACAACTATTGAGTGGCAAAGATCTTGGAAACCCTTCATGGAGACGTTCTTTTCCCCATATGCTTGTAGCGGCTCTTTCTTCATTCTTATTTGGCTACCATCTCGGAGTGGTTAATGAAACACTAGATAGCATTTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTGAGTACGTGTTTAGGGGCTGCTTTTGTTGGATCTCTATTTAGTGGCTGGATTCTAGATGGAGTTGGGCATCGAAGGGCATTCCAACTGTGTGCGCTTCCGATGATAATCGGTGCATCGATGAGTGCAACGACTCGCAGCCTATGGGGCATGATTCTAGGGCGGATATTTGTTGGAACTGGGATGGGCATTGGTCCTCCTGTTGCTGCTCTCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGTACATTTGGTAGCGTCACACAAATTGCTACATGTCTTGGATTGATGGGGGCTCTATTCATTGGACTTCCTTCCAAGGATATAGTGGGTTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCACTGGCTTTTCAAGAGAGGAAGAGGCACCGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGGAGCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAAAGAGGGGATGAATTGGAGACAGTAAAGTTCTCAGAGCTATTGTATGGCCGCCATTTCAAAATGGTTTTCATTGGATCTACCATTTTTGCCTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACTGTCTTTAAAAGTTTCGGTGTGCCTTCAGATATTGCAAATGTATGTGTCGGAGTGGCAAATCTATCAGGGTCAATTGTTGCAATGATATTGATGGATAAGCTTGGAAGAAGGGTGCTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCAATGAGTCTTCAAGTAAGTGGAGCAAGTTCTTATACATCAGGATCTGGAGCACTGAGTCTATCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTTGGAGCTGGTCCAGTGCCTAGTCTCCTACTATCAGAAATTCTTCCCAGCCGTATTAGAGCAAAGGCCATGGCAGTTTGCATGGCTGTGCATTGGGTGGTAAACTTCTTTGTTGGTCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTTTTGTATACAATCTTTGGTATTTTTTGTGTATTGGCTGTGATATTTGTGAAGAGAAATGTAGTGGAAACAAAAGGAAAGTCACTCCAAGAAATTGAAATTGCACTTATTCCACCACAGTAA

Protein Analysis

505

Amino Acids

54.34

Weight (kDa)

8.99

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 69 - 499 1.5e-92 Sugar (and other) transporter
MFS_1 PF07690 73 - 414 1e-17 Major Facilitator Superfamily
MFS_1 PF07690 325 - 490 3.1e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 770
AccI GTMKAC 1 cut(s) 1403
AciI CCGC 5 cut(s) 61, 215, 490, 670, 901
AclWI GGATC 3 cut(s) 367, 934, 1189
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 3 cut(s) 788, 821, 1278
AcuI CTGAAG 2 cut(s) 801, 999
AfaI GTAC 2 cut(s) 334, 577
AflIII ACRYGT 3 cut(s) 335, 605, 814
AgsI TTSAA 4 cut(s) 757, 910, 1151, 1493
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 7 cut(s) 563, 779, 785, 889, 952, 1090, 1247
AluI AGCT 7 cut(s) 563, 779, 785, 889, 952, 1090, 1247
Alw21I GWGCWC 2 cut(s) 814, 1192
Alw26I GTCTC 3 cut(s) 181, 863, 1268
AlwI GGATC 3 cut(s) 367, 934, 1189
AlwNI CAGNNNCTG 1 cut(s) 1184
AoxI GGCC 3 cut(s) 898, 1305, 1388
ApeKI GCWGC 5 cut(s) 347, 465, 533, 701, 1216
ApoI RAATTY 3 cut(s) 788, 821, 1278
ArsI GACNNNNNNTTYG 2 cut(s) 1460, 1492
Asp700I GAANNNNTTC 3 cut(s) 178, 308, 1281
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 521, 1250, 1388
AsuHPI GGTGA 1 cut(s) 549
AvaII GGWCC 2 cut(s) 521, 1250
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 1139
Bbv12I GWGCWC 2 cut(s) 814, 1192
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 5 cut(s) 334, 477, 520, 688, 1203
BccI CCATC 5 cut(s) 252, 380, 505, 613, 1075
BceAI ACGGC 1 cut(s) 1275
BcoDI GTCTC 3 cut(s) 181, 863, 1268
BfaI CTAG 4 cut(s) 269, 383, 485, 1260
BfmI CTRYAG 1 cut(s) 702
BglI GCCNNNNNGGC 2 cut(s) 86, 474
BglII AGATCT 1 cut(s) 166
BisI GCNGC 7 cut(s) 216, 348, 466, 534, 702, 901, 1217
BlsI GCNGC 7 cut(s) 217, 349, 467, 535, 703, 902, 1218
Bme18I GGWCC 2 cut(s) 521, 1250
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 521, 1250, 1388
BmiI GGNNCC 1 cut(s) 772
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 4 cut(s) 67, 103, 406, 452
BmuI ACTGGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 1139
BpmI CTGGAG 2 cut(s) 1206, 1397
Bpu10I CCTNAGC 2 cut(s) 117, 315
Bsa29I ATCGAT 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 289, 648, 1308
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bse1I ACTGG 5 cut(s) 27, 511, 752, 1129, 1253
Bse3DI GCAATG 2 cut(s) 834, 1077
Bse8I GATNNNNATC 1 cut(s) 434
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 289, 648, 1308
BseGI GGATG 3 cut(s) 118, 516, 865
BseJI GATNNNNATC 1 cut(s) 434
BseMI GCAATG 2 cut(s) 834, 1077
BseMII CTCAG 4 cut(s) 108, 156, 897, 1184
BseNI ACTGG 5 cut(s) 27, 511, 752, 1129, 1253
BseRI GAGGAG 2 cut(s) 822, 973
BseXI GCAGC 5 cut(s) 334, 477, 520, 688, 1203
BseYI CCCAGC 1 cut(s) 1286
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 3 cut(s) 900, 1307, 1390
BshNI GGYRCC 1 cut(s) 770
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 2 cut(s) 814, 1192
BsmAI GTCTC 3 cut(s) 181, 863, 1268
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 900, 1307, 1390
Bsp1286I GDGCHC 3 cut(s) 628, 814, 1192
Bsp143I GATC 4 cut(s) 166, 359, 926, 1181
Bsp19I CCATGG 1 cut(s) 1308
BspACI CCGC 5 cut(s) 61, 215, 490, 670, 901
BspANI GGCC 3 cut(s) 900, 1307, 1390
BspCNI CTCAG 4 cut(s) 109, 155, 896, 1185
BspDI ATCGAT 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 772
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 3 cut(s) 367, 934, 1189
BspT107I GGYRCC 1 cut(s) 770
BsrDI GCAATG 2 cut(s) 834, 1077
BsrI ACTGG 5 cut(s) 27, 511, 752, 1129, 1253
BssECI CCNNGG 3 cut(s) 289, 648, 1308
BssMI GATC 4 cut(s) 166, 359, 926, 1181
BssNAI GTATAC 1 cut(s) 1404
BssT1I CCWWGG 3 cut(s) 289, 648, 1308
Bst1107I GTATAC 1 cut(s) 1404
Bst4CI ACNGT 5 cut(s) 417, 694, 874, 991, 1515
Bst6I CTCTTC 2 cut(s) 760, 1442
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 711, 1214
BstDEI CTNAG 5 cut(s) 117, 142, 315, 883, 1193
BstDSI CCRYGG 1 cut(s) 1308
BstF5I GGATG 3 cut(s) 118, 516, 865
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 169, 362, 929, 1184
BstMAI GTCTC 3 cut(s) 181, 863, 1268
BstMBI GATC 4 cut(s) 166, 359, 926, 1181
BstMWI GCNNNNNNNGC 3 cut(s) 86, 474, 710
BstNSI RCATGY 3 cut(s) 609, 818, 1216
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 5 cut(s) 334, 477, 520, 688, 1203
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 4 cut(s) 166, 359, 926, 1181
BstYI RGATCY 4 cut(s) 166, 359, 926, 1181
BstZ17I GTATAC 1 cut(s) 1404
Bsu15I ATCGAT 1 cut(s) 446
BsuRI GGCC 3 cut(s) 900, 1307, 1390
BsuTUI ATCGAT 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 1308
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 118, 516, 865
BtsI GCAGTG 2 cut(s) 711, 1140
BtsIMutI CAGTG 5 cut(s) 711, 745, 1140, 1190, 1260
Cac8I GCNNGC 2 cut(s) 711, 1214
CaiI CAGNNNCTG 1 cut(s) 1184
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 521, 1250, 1388
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 2 cut(s) 12, 577
Csp6I GTAC 2 cut(s) 333, 576
CspCI CAANNNNNGTGG 2 cut(s) 1380, 1415
CviQI GTAC 2 cut(s) 333, 576
DdeI CTNAG 5 cut(s) 117, 142, 315, 883, 1193
DpnI GATC 4 cut(s) 168, 361, 928, 1183
DpnII GATC 4 cut(s) 166, 359, 926, 1181
DraI TTTAAA 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 2 cut(s) 760, 1442
EarI CTCTTC 2 cut(s) 760, 1442
EciI GGCGGA 1 cut(s) 505
Eco130I CCWWGG 3 cut(s) 289, 648, 1308
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 521, 1250
Eco57I CTGAAG 2 cut(s) 801, 999
EcoT14I CCWWGG 3 cut(s) 289, 648, 1308
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 3 cut(s) 289, 648, 1308
Esp3I CGTCTC 1 cut(s) 181
FauI CCCGC 2 cut(s) 54, 663
FauNDI CATATG 1 cut(s) 204
FblI GTMKAC 1 cut(s) 1403
Fnu4HI GCNGC 7 cut(s) 216, 348, 466, 534, 702, 901, 1217
FokI GGATG 3 cut(s) 125, 523, 872
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 7 cut(s) 216, 348, 466, 534, 702, 901, 1217
FspBI CTAG 4 cut(s) 269, 383, 485, 1260
GlaI GCGC 1 cut(s) 423
GluI GCNGC 7 cut(s) 216, 348, 466, 534, 702, 901, 1217
GsaI CCCAGC 1 cut(s) 1290
GsuI CTGGAG 2 cut(s) 1206, 1397
HaeIII GGCC 3 cut(s) 900, 1307, 1390
HgaI GACGC 2 cut(s) 12, 577
HhaI GCGC 1 cut(s) 424
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 8 cut(s) 140, 304, 379, 460, 481, 739, 1144, 1195
HphI GGTGA 1 cut(s) 549
Hpy166II GTNNAC 2 cut(s) 1342, 1404
Hpy188I TCNGA 9 cut(s) 145, 251, 429, 550, 850, 886, 1018, 1040, 1276
Hpy188III TCNNGA 5 cut(s) 284, 383, 757, 1179, 1185
Hpy8I GTNNAC 2 cut(s) 1342, 1404
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 6 cut(s) 189, 319, 396, 654, 1023, 1092
HpyCH4III ACNGT 5 cut(s) 417, 694, 874, 991, 1515
HpyCH4IV ACGT 3 cut(s) 104, 190, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 474, 710
HpyF3I CTNAG 5 cut(s) 117, 142, 315, 883, 1193
HpySE526I ACGT 3 cut(s) 104, 190, 335
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 4 cut(s) 166, 359, 926, 1181
LmnI GCTCC 4 cut(s) 809, 1160, 1187, 1244
Lsp1109I GCAGC 5 cut(s) 334, 477, 520, 688, 1203
LweI GCATC 4 cut(s) 67, 103, 406, 452
MaeI CTAG 4 cut(s) 269, 383, 485, 1260
MaeII ACGT 3 cut(s) 104, 190, 335
MaeIII GTNAC 3 cut(s) 100, 589, 1476
MalI GATC 4 cut(s) 168, 361, 928, 1183
MboI GATC 4 cut(s) 166, 359, 926, 1181
MboII GAAGA 7 cut(s) 216, 777, 1100, 1107, 1139, 1274, 1459
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 4 cut(s) 166, 359, 926, 1181
MhlI GDGCHC 3 cut(s) 628, 814, 1192
MluCI AATT 9 cut(s) 597, 788, 821, 836, 863, 1062, 1278, 1488, 1494
MlyI GAGTC 5 cut(s) 134, 454, 748, 1153, 1204
MmeI TCCRAC 4 cut(s) 337, 436, 481, 1018
MnlI CCTC 9 cut(s) 102, 112, 534, 753, 755, 761, 800, 848, 994
MroXI GAANNNNTTC 3 cut(s) 178, 308, 1281
MseI TTAA 3 cut(s) 258, 819, 996
MslI CAYNNNNRTG 3 cut(s) 75, 1133, 1325
MspA1I CMGCKG 1 cut(s) 952
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 86, 474, 710
NcoI CCATGG 1 cut(s) 1308
NdeI CATATG 1 cut(s) 204
NdeII GATC 4 cut(s) 166, 359, 926, 1181
NlaIV GGNNCC 1 cut(s) 772
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 3 cut(s) 100, 589, 1476
NspI RCATGY 3 cut(s) 609, 818, 1216
PaeI GCATGC 1 cut(s) 1216
PciI ACATGT 2 cut(s) 605, 814
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 3 cut(s) 178, 308, 1281
PfeI GAWTC 3 cut(s) 304, 379, 481
PkrI GCNGC 7 cut(s) 217, 349, 467, 535, 703, 902, 1218
PleI GAGTC 5 cut(s) 134, 454, 747, 1152, 1203
PpsI GAGTC 5 cut(s) 134, 454, 747, 1152, 1203
Ppu21I YACGTR 1 cut(s) 336
PscI ACATGT 2 cut(s) 605, 814
PspFI CCCAGC 1 cut(s) 1286
PspN4I GGNNCC 1 cut(s) 772
PspPI GGNCC 3 cut(s) 521, 1250, 1388
PsrI GAACNNNNNNTAC 2 cut(s) 678, 710
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 4 cut(s) 166, 359, 926, 1181
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 2 cut(s) 334, 577
RsaNI GTAC 2 cut(s) 333, 576
RseI CAYNNNNRTG 3 cut(s) 75, 1133, 1325
SaqAI TTAA 3 cut(s) 258, 819, 996
SatI GCNGC 7 cut(s) 216, 348, 466, 534, 702, 901, 1217
Sau3AI GATC 4 cut(s) 166, 359, 926, 1181
Sau96I GGNCC 3 cut(s) 521, 1250, 1388
SchI GAGTC 5 cut(s) 134, 454, 748, 1153, 1204
SduI GDGCHC 3 cut(s) 628, 814, 1192
SfaNI GCATC 4 cut(s) 67, 103, 406, 452
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 2 cut(s) 521, 1250
SmiMI CAYNNNNRTG 3 cut(s) 75, 1133, 1325
SphI GCATGC 1 cut(s) 1216
Sse9I AATT 9 cut(s) 597, 788, 821, 836, 863, 1062, 1278, 1488, 1494
SsiI CCGC 5 cut(s) 61, 215, 490, 670, 901
SspMI CTAG 4 cut(s) 269, 383, 485, 1260
StyI CCWWGG 3 cut(s) 289, 648, 1308
TaaI ACNGT 5 cut(s) 417, 694, 874, 991, 1515
TaiI ACGT 3 cut(s) 107, 193, 338
TaqI TCGA 3 cut(s) 107, 400, 446
TasI AATT 9 cut(s) 597, 788, 821, 836, 863, 1062, 1278, 1488, 1494
TauI GCSGC 2 cut(s) 218, 903
TfiI GAWTC 3 cut(s) 304, 379, 481
Tru1I TTAA 3 cut(s) 258, 819, 996
Tru9I TTAA 3 cut(s) 258, 819, 996
TscAI CASTG 5 cut(s) 711, 752, 1140, 1197, 1260
TseFI GTSAC 3 cut(s) 100, 589, 1476
TseI GCWGC 5 cut(s) 347, 465, 533, 701, 1216
Tsp45I GTSAC 3 cut(s) 100, 589, 1476
TspDTI ATGAA 6 cut(s) 171, 216, 276, 622, 876, 910
TspRI CASTG 5 cut(s) 711, 752, 1140, 1197, 1260
VpaK11BI GGWCC 2 cut(s) 521, 1250
XapI RAATTY 3 cut(s) 788, 821, 1278
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 609, 818, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 1403
XmnI GAANNNNTTC 3 cut(s) 178, 308, 1281
XspI CTAG 4 cut(s) 269, 383, 485, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.