RLG00000019789
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
56772971 .. 56779240
6270 bp
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UTR
Exon/CDS
Intron
RLM00000019789

Sequence Viewer

Length: 1518 bp
ATGTCTGCTGGAAAGTTCTCTGCCTCGAGTTTTGGACAAGGTTTCTATAAGTTTGCTATGCGGGGTCGTCATATTGATGCCTACTCGGCGTACAAGCGTGTCACGTCGAGGGATGCTGAGGCTTATGATAGAGAAGAAGACTCAGAGCAACTATTGAGTGGCAAAGATCTTGGAAACCCTTCATGGAGACGTTCTTTTCCCCATATGCTTGTAGCGGCTCTTTCTTCATTCTTATTTGGCTACCATCTCGGAGTGGTTAATGAAACACTAGATAGCATTTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTGAGCACGTGTTTAGGGGCTGCTTTTGTTGGATCTCTATTTAGTGGCTGGATTCTAGATGGAGTTGGGCATCGAAGGGCATTCCAACTGTGTGCGCTTCCGATGATAATCGGTGCATCGATGAGTGCAACGACTCACAGCCTATGGGGCATGATTCTAGGGCGGATATTTGTTGGAACTGGGATGGGCATTGGTCCTCCTGTTGCTGCTCTCTATGTATCAGAGATTTCACCAGCTTTTGTAAGGGGTACATTTGGTAGCGTCACGCAAATTGCTACATGTCTTGGATTGATGGGGGCCCTATTCATTGGACTTCCTTCCAAGGATATAGTTAGTTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCACTGGCTTTTCAAGAGAGGAAGAGGCACTGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGGAGCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAAAGAGGGGATGAATTGGAGATAGTAAAATTCTCAGAGCTACTGTATGGTCGCCATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACTGTCTTTAAAAGCTTCGGTGTGCCTTCAGATATTGCAAATGTATGTGTCGGAGTTGCAAATCTATCAGGGTCAATTGTTGCAATGATGTTGATGGATAAGCTTGGAAGGAGGGTGCTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCAATGAGTCTTCAAGTAAGTGGAGCAAGTTCTTACACATCAGGATCTGGAGCACTGAGTCTATCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTTGGAGCTGGTCCAGTGCCTAGTCTCCTACTATCAGAAATTCTTCCCAGCCGTATTAGAGCAAAGGCCATGGCAGTTTGTATGGCTGTGCATTGGGTGGTAAACTTCTTTGTTGGTCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTTCTGTATACAATCTTTGGTATTTTTTGTGTATTGGCTGTGATATTTGTGAAGAGAAATGTAGTGGAAACAAAAGGAAAGTCACTCCAAGAAATTGAAATTGCACTTATTCCACCACAGTAA

Protein Analysis

506

Amino Acids

54.39

Weight (kDa)

8.78

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 69 - 499 1.4e-92 Sugar (and other) transporter
MFS_1 PF07690 73 - 414 3.2e-18 Major Facilitator Superfamily
MFS_1 PF07690 344 - 489 2.9e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 929, 1403
AciI CCGC 4 cut(s) 61, 215, 490, 670
AclWI GGATC 2 cut(s) 367, 1189
AcsI RAATTY 4 cut(s) 788, 821, 878, 1278
AcuI CTGAAG 3 cut(s) 795, 801, 999
AcvI CACGTG 1 cut(s) 336
AfaI GTAC 2 cut(s) 92, 577
AflIII ACRYGT 3 cut(s) 335, 605, 814
AgsI TTSAA 4 cut(s) 757, 910, 1151, 1493
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 8 cut(s) 563, 779, 785, 889, 952, 1002, 1090, 1247
AluI AGCT 8 cut(s) 563, 779, 785, 889, 952, 1002, 1090, 1247
Alw21I GWGCWC 3 cut(s) 335, 814, 1192
Alw26I GTCTC 2 cut(s) 181, 1268
AlwI GGATC 2 cut(s) 367, 1189
AlwNI CAGNNNCTG 1 cut(s) 1184
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 3 cut(s) 624, 1305, 1388
ApaI GGGCCC 1 cut(s) 628
ApeKI GCWGC 4 cut(s) 347, 533, 701, 1216
ApoI RAATTY 4 cut(s) 788, 821, 878, 1278
ArsI GACNNNNNNTTYG 2 cut(s) 1460, 1492
Asp700I GAANNNNTTC 3 cut(s) 178, 308, 1281
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 5 cut(s) 521, 624, 625, 1250, 1388
AsuHPI GGTGA 1 cut(s) 549
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 521, 1250
BaeGI GKGCMC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 628
BbrPI CACGTG 1 cut(s) 336
BbsI GAAGAC 2 cut(s) 144, 1139
Bbv12I GWGCWC 3 cut(s) 335, 814, 1192
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 334, 520, 688, 1203
BccI CCATC 5 cut(s) 252, 380, 505, 613, 1075
BceAI ACGGC 1 cut(s) 1275
BcoDI GTCTC 2 cut(s) 181, 1268
BfaI CTAG 4 cut(s) 269, 383, 485, 1260
BfmI CTRYAG 1 cut(s) 702
BglI GCCNNNNNGGC 2 cut(s) 86, 474
BglII AGATCT 1 cut(s) 166
BisI GCNGC 5 cut(s) 216, 348, 534, 702, 1217
BlsI GCNGC 5 cut(s) 217, 349, 535, 703, 1218
Bme18I GGWCC 2 cut(s) 521, 1250
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 5 cut(s) 521, 624, 625, 1250, 1388
BmiI GGNNCC 2 cut(s) 625, 626
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 4 cut(s) 67, 103, 406, 452
BmuI ACTGGG 1 cut(s) 516
BpiI GAAGAC 2 cut(s) 144, 1139
BpmI CTGGAG 2 cut(s) 1206, 1397
Bpu10I CCTNAGC 2 cut(s) 117, 315
Bsa29I ATCGAT 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 289, 648, 1308
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bse1I ACTGG 4 cut(s) 511, 752, 1129, 1253
Bse3DI GCAATG 2 cut(s) 834, 1077
Bse8I GATNNNNATC 1 cut(s) 434
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 289, 648, 1308
BseGI GGATG 3 cut(s) 118, 516, 865
BseJI GATNNNNATC 1 cut(s) 434
BseMI GCAATG 2 cut(s) 834, 1077
BseMII CTCAG 4 cut(s) 108, 156, 897, 1184
BseNI ACTGG 4 cut(s) 511, 752, 1129, 1253
BseRI GAGGAG 2 cut(s) 822, 973
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 4 cut(s) 334, 520, 688, 1203
BseYI CCCAGC 1 cut(s) 1286
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 3 cut(s) 626, 1307, 1390
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 3 cut(s) 335, 814, 1192
BsiHKCI CYCGRG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 181, 1268
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 626, 1307, 1390
BsoBI CYCGRG 1 cut(s) 25
Bsp120I GGGCCC 1 cut(s) 624
Bsp1286I GDGCHC 4 cut(s) 335, 628, 814, 1192
Bsp143I GATC 3 cut(s) 166, 359, 1181
Bsp19I CCATGG 1 cut(s) 1308
BspACI CCGC 4 cut(s) 61, 215, 490, 670
BspANI GGCC 3 cut(s) 626, 1307, 1390
BspCNI CTCAG 4 cut(s) 109, 155, 896, 1185
BspDI ATCGAT 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 625, 626
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 2 cut(s) 367, 1189
BsrDI GCAATG 2 cut(s) 834, 1077
BsrI ACTGG 4 cut(s) 511, 752, 1129, 1253
BssECI CCNNGG 3 cut(s) 289, 648, 1308
BssMI GATC 3 cut(s) 166, 359, 1181
BssNAI GTATAC 1 cut(s) 1404
BssT1I CCWWGG 3 cut(s) 289, 648, 1308
Bst1107I GTATAC 1 cut(s) 1404
Bst4CI ACNGT 5 cut(s) 417, 694, 894, 991, 1515
Bst6I CTCTTC 2 cut(s) 760, 1442
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 711, 1214
BstDEI CTNAG 5 cut(s) 117, 142, 315, 883, 1193
BstDSI CCRYGG 1 cut(s) 1308
BstF5I GGATG 3 cut(s) 118, 516, 865
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 3 cut(s) 169, 362, 1184
BstMAI GTCTC 2 cut(s) 181, 1268
BstMBI GATC 3 cut(s) 166, 359, 1181
BstMWI GCNNNNNNNGC 3 cut(s) 86, 474, 710
BstNSI RCATGY 3 cut(s) 609, 818, 1216
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 628
BstV1I GCAGC 4 cut(s) 334, 520, 688, 1203
BstV2I GAAGAC 2 cut(s) 144, 1139
BstX2I RGATCY 3 cut(s) 166, 359, 1181
BstYI RGATCY 3 cut(s) 166, 359, 1181
BstZ17I GTATAC 1 cut(s) 1404
Bsu15I ATCGAT 1 cut(s) 446
BsuRI GGCC 3 cut(s) 626, 1307, 1390
BsuTUI ATCGAT 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 1308
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 118, 516, 865
BtsI GCAGTG 2 cut(s) 711, 1140
BtsIMutI CAGTG 6 cut(s) 711, 745, 771, 1140, 1190, 1260
Cac8I GCNNGC 2 cut(s) 711, 1214
CaiI CAGNNNCTG 1 cut(s) 1184
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 5 cut(s) 521, 624, 625, 1250, 1388
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 91, 576
CviAII CATG 8 cut(s) 183, 478, 606, 721, 815, 1129, 1213, 1309
CviQI GTAC 2 cut(s) 91, 576
DdeI CTNAG 5 cut(s) 117, 142, 315, 883, 1193
DpnI GATC 3 cut(s) 168, 361, 1183
DpnII GATC 3 cut(s) 166, 359, 1181
DraI TTTAAA 1 cut(s) 997
Eam1104I CTCTTC 2 cut(s) 760, 1442
EarI CTCTTC 2 cut(s) 760, 1442
EciI GGCGGA 1 cut(s) 505
Eco130I CCWWGG 3 cut(s) 289, 648, 1308
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 521, 1250
Eco57I CTGAAG 3 cut(s) 795, 801, 999
Eco72I CACGTG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 624, 625
EcoT14I CCWWGG 3 cut(s) 289, 648, 1308
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 3 cut(s) 289, 648, 1308
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 8 cut(s) 186, 481, 609, 724, 818, 1132, 1216, 1312
FatI CATG 8 cut(s) 182, 477, 605, 720, 814, 1128, 1212, 1308
FauI CCCGC 2 cut(s) 54, 663
FauNDI CATATG 1 cut(s) 204
FblI GTMKAC 2 cut(s) 929, 1403
Fnu4HI GCNGC 5 cut(s) 216, 348, 534, 702, 1217
FokI GGATG 3 cut(s) 125, 523, 872
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 5 cut(s) 216, 348, 534, 702, 1217
FspBI CTAG 4 cut(s) 269, 383, 485, 1260
GlaI GCGC 1 cut(s) 423
GluI GCNGC 5 cut(s) 216, 348, 534, 702, 1217
GsaI CCCAGC 1 cut(s) 1290
GsuI CTGGAG 2 cut(s) 1206, 1397
HaeIII GGCC 3 cut(s) 626, 1307, 1390
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 424
Hin1II CATG 8 cut(s) 186, 481, 609, 724, 818, 1132, 1216, 1312
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 2 cut(s) 1000, 1088
HinfI GANTC 8 cut(s) 140, 304, 379, 460, 481, 739, 1144, 1195
HphI GGTGA 1 cut(s) 549
Hpy166II GTNNAC 3 cut(s) 930, 1342, 1404
Hpy188I TCNGA 9 cut(s) 145, 251, 429, 550, 850, 886, 1018, 1040, 1276
Hpy188III TCNNGA 5 cut(s) 284, 383, 757, 1179, 1185
Hpy8I GTNNAC 3 cut(s) 930, 1342, 1404
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 6 cut(s) 189, 319, 396, 654, 1023, 1089
HpyCH4III ACNGT 5 cut(s) 417, 694, 894, 991, 1515
HpyCH4IV ACGT 3 cut(s) 104, 190, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 474, 710
HpyF3I CTNAG 5 cut(s) 117, 142, 315, 883, 1193
HpySE526I ACGT 3 cut(s) 104, 190, 335
Hsp92II CATG 8 cut(s) 186, 481, 609, 724, 818, 1132, 1216, 1312
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 3 cut(s) 166, 359, 1181
LmnI GCTCC 4 cut(s) 809, 1160, 1187, 1244
Lsp1109I GCAGC 4 cut(s) 334, 520, 688, 1203
LweI GCATC 4 cut(s) 67, 103, 406, 452
MaeI CTAG 4 cut(s) 269, 383, 485, 1260
MaeII ACGT 3 cut(s) 104, 190, 335
MaeIII GTNAC 3 cut(s) 100, 589, 1476
MalI GATC 3 cut(s) 168, 361, 1183
MboI GATC 3 cut(s) 166, 359, 1181
MboII GAAGA 8 cut(s) 146, 149, 216, 777, 1100, 1139, 1274, 1459
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 3 cut(s) 166, 359, 1181
MhlI GDGCHC 4 cut(s) 335, 628, 814, 1192
MlyI GAGTC 5 cut(s) 134, 454, 748, 1153, 1204
MmeI TCCRAC 4 cut(s) 337, 436, 481, 1018
MroXI GAANNNNTTC 3 cut(s) 178, 308, 1281
MseI TTAA 3 cut(s) 258, 819, 996
MslI CAYNNNNRTG 2 cut(s) 75, 1133
MspA1I CMGCKG 1 cut(s) 952
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 86, 474, 710
NcoI CCATGG 1 cut(s) 1308
NdeI CATATG 1 cut(s) 204
NdeII GATC 3 cut(s) 166, 359, 1181
NlaIII CATG 8 cut(s) 186, 481, 609, 724, 818, 1132, 1216, 1312
NlaIV GGNNCC 2 cut(s) 625, 626
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 3 cut(s) 100, 589, 1476
NspI RCATGY 3 cut(s) 609, 818, 1216
PaeI GCATGC 1 cut(s) 1216
PaeR7I CTCGAG 1 cut(s) 25
PciI ACATGT 2 cut(s) 605, 814
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 3 cut(s) 178, 308, 1281
PfeI GAWTC 3 cut(s) 304, 379, 481
PkrI GCNGC 5 cut(s) 217, 349, 535, 703, 1218
PleI GAGTC 5 cut(s) 134, 454, 747, 1152, 1203
PmaCI CACGTG 1 cut(s) 336
PmlI CACGTG 1 cut(s) 336
PpsI GAGTC 5 cut(s) 134, 454, 747, 1152, 1203
Ppu21I YACGTR 1 cut(s) 336
PscI ACATGT 2 cut(s) 605, 814
PspCI CACGTG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 1286
PspN4I GGNNCC 2 cut(s) 625, 626
PspOMI GGGCCC 1 cut(s) 624
PspPI GGNCC 5 cut(s) 521, 624, 625, 1250, 1388
PspXI VCTCGAGB 1 cut(s) 25
PsrI GAACNNNNNNTAC 2 cut(s) 678, 710
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 3 cut(s) 166, 359, 1181
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 2 cut(s) 92, 577
RsaNI GTAC 2 cut(s) 91, 576
RseI CAYNNNNRTG 2 cut(s) 75, 1133
SaqAI TTAA 3 cut(s) 258, 819, 996
SatI GCNGC 5 cut(s) 216, 348, 534, 702, 1217
Sau3AI GATC 3 cut(s) 166, 359, 1181
Sau96I GGNCC 5 cut(s) 521, 624, 625, 1250, 1388
SchI GAGTC 5 cut(s) 134, 454, 748, 1153, 1204
SduI GDGCHC 4 cut(s) 335, 628, 814, 1192
SfaNI GCATC 4 cut(s) 67, 103, 406, 452
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 521, 1250
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 75, 1133
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 1216
SsiI CCGC 4 cut(s) 61, 215, 490, 670
SspMI CTAG 4 cut(s) 269, 383, 485, 1260
StyI CCWWGG 3 cut(s) 289, 648, 1308
TaaI ACNGT 5 cut(s) 417, 694, 894, 991, 1515
TaiI ACGT 3 cut(s) 107, 193, 338
TaqI TCGA 4 cut(s) 26, 107, 400, 446
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 3 cut(s) 304, 379, 481
Tru1I TTAA 3 cut(s) 258, 819, 996
Tru9I TTAA 3 cut(s) 258, 819, 996
TscAI CASTG 6 cut(s) 711, 752, 778, 1140, 1197, 1260
TseFI GTSAC 3 cut(s) 100, 589, 1476
TseI GCWGC 4 cut(s) 347, 533, 701, 1216
Tsp45I GTSAC 3 cut(s) 100, 589, 1476
TspDTI ATGAA 6 cut(s) 171, 216, 276, 622, 876, 910
TspRI CASTG 6 cut(s) 711, 752, 778, 1140, 1197, 1260
VpaK11BI GGWCC 2 cut(s) 521, 1250
XapI RAATTY 4 cut(s) 788, 821, 878, 1278
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 609, 818, 1216
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 2 cut(s) 929, 1403
XmnI GAANNNNTTC 3 cut(s) 178, 308, 1281
XspI CTAG 4 cut(s) 269, 383, 485, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.