Rh1AG411900

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003306
Physical Location & Seq
Forward (+)
64513650 .. 64513961
312 bp
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UTR
Exon/CDS
Intron
Rh1AG411900.1

Sequence Viewer

Length: 312 bp
ATGTGTACAGCTATGGGGTTGGAGATGGTGACTGGAAAGAACCCGATAAAACTGGATGTGGATGCCATTGATGGCGAGCAGGGAAGGCTGATCATGTGGGTGATCAGGGAGAAAGTACTGAATGGAACTTGTGCTAGTGAAATTGAAGCTCGGATAGGAGACGTCATAGAACCTTCGTTTGCAGGTGAATGTGATGTGACAAAGATGGGGATTCACAAAGACCAAGAGCATTGGCGGAAAATTAGGGACAGGCGGCTTTGCTGTGTCATGATCTATTTAAGAAACTATTGTACAGAGATAAAGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

103

Amino Acids

11.85

Weight (kDa)

6.1

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 2 cut(s) 235, 253
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 3 cut(s) 7, 117, 292
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 11, 149
AluI AGCT 2 cut(s) 11, 149
Alw26I GTCTC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 40, 112, 197
BccI CCATC 3 cut(s) 19, 65, 199
BclI TGATCA 2 cut(s) 90, 102
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmcAI AGTACT 1 cut(s) 117
BmsI GCATC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 37, 57
BseGI GGATG 2 cut(s) 61, 67
BseNI ACTGG 2 cut(s) 37, 57
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 260
Bsp1407I TGTACA 2 cut(s) 5, 290
Bsp143I GATC 3 cut(s) 90, 102, 270
BspACI CCGC 2 cut(s) 235, 253
BspHI TCATGA 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 173
BsrGI TGTACA 2 cut(s) 5, 290
BsrI ACTGG 2 cut(s) 37, 57
BssMI GATC 3 cut(s) 90, 102, 270
BssNI GRCGYC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 2 cut(s) 5, 290
BstC8I GCNNGC 1 cut(s) 77
BstF5I GGATG 2 cut(s) 61, 67
BstKTI GATC 3 cut(s) 93, 105, 273
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 90, 102, 270
BstMWI GCNNNNNNNGC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 61, 67
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 77
CciI TCATGA 1 cut(s) 267
Csp6I GTAC 3 cut(s) 6, 116, 291
CviAII CATG 2 cut(s) 94, 268
CviJI RGCY 4 cut(s) 11, 88, 149, 256
CviKI_1 RGCY 4 cut(s) 11, 88, 149, 256
CviQI GTAC 3 cut(s) 6, 116, 291
DpnI GATC 3 cut(s) 92, 104, 272
DpnII GATC 3 cut(s) 90, 102, 270
EciI GGCGGA 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 2 cut(s) 97, 271
FaiI YATR 4 cut(s) 14, 95, 167, 269
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 93, 267
FbaI TGATCA 2 cut(s) 90, 102
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 2 cut(s) 68, 74
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 97, 271
HinfI GANTC 1 cut(s) 211
HphI GGTGA 3 cut(s) 40, 112, 197
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 78, 183
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 97, 271
Ksp22I TGATCA 2 cut(s) 90, 102
Kzo9I GATC 3 cut(s) 90, 102, 270
LpnPI CCDG 6 cut(s) 18, 38, 65, 91, 168, 235
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 28, 196
MalI GATC 3 cut(s) 92, 104, 272
MboI GATC 3 cut(s) 90, 102, 270
MluCI AATT 2 cut(s) 141, 240
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 3 cut(s) 90, 102, 270
NlaIII CATG 2 cut(s) 97, 271
NmuCI GTSAC 2 cut(s) 28, 196
PagI TCATGA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 255
RsaI GTAC 3 cut(s) 7, 117, 292
RsaNI GTAC 3 cut(s) 6, 116, 291
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 3 cut(s) 90, 102, 270
ScaI AGTACT 1 cut(s) 117
SetI ASST 5 cut(s) 13, 151, 165, 175, 187
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 141, 240
SsiI CCGC 2 cut(s) 235, 253
SspMI CTAG 1 cut(s) 135
TaiI ACGT 1 cut(s) 165
TasI AATT 2 cut(s) 141, 240
TatI WGTACW 3 cut(s) 5, 115, 290
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseFI GTSAC 2 cut(s) 28, 196
Tsp45I GTSAC 2 cut(s) 28, 196
XspI CTAG 1 cut(s) 135
ZraI GACGTC 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.