Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003306

Physical Location & Seq

Genomic Coordinates Forward (+)

61506316 .. 61512302

Gene Structure 5987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG424400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGCGGGGTCGTCATGTTGATGCCTACTCGGCGTACAAGCGTGTCACGTCGAGGGATGCTGAGGCTTATGATAGAGAAGAAGACTCAGCTGAACAACTATTGAGTGGCAAAGATCTTGGAAACCCTTCATGGAGACGTTCTTTTCCCCATATGCTTGTAGCGGCTCTTTCTTCATTCTTATTTGGCTACCATCTCGGAGTGGTTAATGAAACACTAGATAGCATCTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTCAGTACGTGTTTAGGGGCTGCTTTTGTTGGATCTCTATTTAGTGGCTGGATTCTAGATGGAGTTGGGCATCGAAGGGCATTCCAACTGTGTGCGCTTCCGATGATAATCGGTGCATCGATGAGTGCAACTACTCGCAGCCTATGGGGCATGATTCTAGGGCGGATGTTTGTTGGAACTGGGATGGGCATTGGTCCTCCTGTTGCTGCTCTCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGTACATTTGGTAGCGTCACGCAAATTGCTACATGTCTTGGATTGATGGGGGCTCTATTCATTGGACTTCCTTCCAAGGATATAGTGGGTTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCACTGGCTTTTCAAGAGAGGAAGAGGCACTGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGGAGCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAAAGAGGGGATGAATTGGAGACAGTAATGTTCTCAGAGCTACTGTATGGCCGCCATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACGGTCTTTAAAAGCTTCGGTGTGCCTTCAGATATTGCAAATGTATGTGTCGGAGTTGCAAATCTATCAGGGTCAATTGTTGCAATGATATTGATGGATAAGCTTGGAAGAAGGGTGCTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCAATGAGTCTTCAAGTAAGTGGAGCAAGTTCTTATACATCAGGATCTGGAGCACTGAGTCTATCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTTGGAGCTGGTCCAGTGCCTAGTCTCCTACTATCAGAAATTCTTCCCAGCCGTATTAGAGCGAAGGCCATGGCAGTTTGCATGGCTGTGCATTGGGTGGTAAACTTCTTTGTTGGTCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTGCTGTATACAATCTTTGGTATTTTTTGTGTATTGGCTGTGATCTTTGTGAAGAGAAATGTAGTGGAAACAAAAGGAAAGTCACTTCAAGAAATTGAAATTGCACTTATTCCACCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

487

Amino Acids

52.43

Weight (kDa)

8.52

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	51 - 481	4.2e-92	Sugar (and other) transporter
MFS_1	PF07690	55 - 396	2.6e-17	Major Facilitator Superfamily
MFS_1	PF07690	327 - 472	6.6e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79820 AT1G79820 AT1G79820 AT1G79820 AT1G79820
fragaria_vesca	FvH4_6g31830
malus_domestica	MD09G1209000.v1.1 MD17G1190600.v1.1
prunus_persica	Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066300_v2.0.a1 Prupe.3G066900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139081
rosa_laevigata	RLG00000019789
rosa_roxburghii	Rroxscaffold_2G00105690 Rroxscaffold_3G00260160 Rroxscaffold_3G00260170
rosa_samantha	Rh1AG411900 Rh2AG404700 Rh2BG414700 Rh2CG391000 Rh2DG424400
rosa_wichuraiana	Rw2G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	875, 1349
AciI	CCGC	5 cut(s)	4, 161, 436, 616, 847
AclWI	GGATC	2 cut(s)	313, 1135
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	3 cut(s)	734, 767, 1224
AcuI	CTGAAG	3 cut(s)	741, 747, 945
AfaI	GTAC	3 cut(s)	35, 280, 523
AflIII	ACRYGT	3 cut(s)	281, 551, 760
AgsI	TTSAA	5 cut(s)	703, 856, 1097, 1430, 1439
AjiI	CACGTC	1 cut(s)	48
AluBI	AGCT	9 cut(s)	89, 509, 725, 731, 835, 898, 948, 1036, 1193
AluI	AGCT	9 cut(s)	89, 509, 725, 731, 835, 898, 948, 1036, 1193
Alw21I	GWGCWC	2 cut(s)	760, 1138
Alw26I	GTCTC	3 cut(s)	127, 809, 1214
AlwI	GGATC	2 cut(s)	313, 1135
AlwNI	CAGNNNCTG	1 cut(s)	1130
AoxI	GGCC	3 cut(s)	844, 1251, 1334
ApeKI	GCWGC	5 cut(s)	293, 411, 479, 647, 1162
ApoI	RAATTY	3 cut(s)	734, 767, 1224
ArsI	GACNNNNNNTTYG	2 cut(s)	1406, 1438
Asp700I	GAANNNNTTC	3 cut(s)	124, 254, 1227
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	467, 1196, 1334
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	467, 1196
BanII	GRGCYC	1 cut(s)	574
BbsI	GAAGAC	2 cut(s)	87, 1085
Bbv12I	GWGCWC	2 cut(s)	760, 1138
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	280, 423, 466, 634, 1149
BccI	CCATC	5 cut(s)	198, 326, 451, 559, 1021
BceAI	ACGGC	1 cut(s)	1221
BcoDI	GTCTC	3 cut(s)	127, 809, 1214
BfaI	CTAG	4 cut(s)	215, 329, 431, 1206
BfmI	CTRYAG	1 cut(s)	648
BglI	GCCNNNNNGGC	2 cut(s)	29, 420
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	7 cut(s)	162, 294, 412, 480, 648, 847, 1163
BlsI	GCNGC	7 cut(s)	163, 295, 413, 481, 649, 848, 1164
Bme18I	GGWCC	2 cut(s)	467, 1196
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	467, 1196, 1334
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	5 cut(s)	10, 46, 231, 352, 398
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	87, 1085
BpmI	CTGGAG	2 cut(s)	1152, 1343
Bpu10I	CCTNAGC	2 cut(s)	60, 261
Bsa29I	ATCGAT	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	235, 594, 1254
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bse1I	ACTGG	4 cut(s)	457, 698, 1075, 1199
Bse3DI	GCAATG	2 cut(s)	780, 1023
Bse8I	GATNNNNATC	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	235, 594, 1254
BseGI	GGATG	4 cut(s)	61, 444, 462, 811
BseJI	GATNNNNATC	1 cut(s)	380
BseMI	GCAATG	2 cut(s)	780, 1023
BseMII	CTCAG	4 cut(s)	51, 99, 843, 1130
BseNI	ACTGG	4 cut(s)	457, 698, 1075, 1199
BseRI	GAGGAG	2 cut(s)	768, 919
BseXI	GCAGC	5 cut(s)	280, 423, 466, 634, 1149
BseYI	CCCAGC	1 cut(s)	1232
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	846, 1253, 1336
BshVI	ATCGAT	1 cut(s)	392
BsiHKAI	GWGCWC	2 cut(s)	760, 1138
BsmAI	GTCTC	3 cut(s)	127, 809, 1214
BsmBI	CGTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	846, 1253, 1336
Bsp1286I	GDGCHC	3 cut(s)	574, 760, 1138
Bsp143I	GATC	4 cut(s)	112, 305, 1127, 1383
Bsp19I	CCATGG	1 cut(s)	1254
BspACI	CCGC	5 cut(s)	4, 161, 436, 616, 847
BspANI	GGCC	3 cut(s)	846, 1253, 1336
BspCNI	CTCAG	4 cut(s)	52, 98, 842, 1131
BspDI	ATCGAT	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	2 cut(s)	313, 1135
BsrDI	GCAATG	2 cut(s)	780, 1023
BsrI	ACTGG	4 cut(s)	457, 698, 1075, 1199
BssECI	CCNNGG	3 cut(s)	235, 594, 1254
BssMI	GATC	4 cut(s)	112, 305, 1127, 1383
BssNAI	GTATAC	1 cut(s)	1350
BssT1I	CCWWGG	3 cut(s)	235, 594, 1254
Bst1107I	GTATAC	1 cut(s)	1350
Bst4CI	ACNGT	6 cut(s)	363, 640, 820, 840, 937, 1461
Bst6I	CTCTTC	2 cut(s)	706, 1388
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	657, 1160
BstDEI	CTNAG	5 cut(s)	60, 85, 261, 829, 1139
BstDSI	CCRYGG	1 cut(s)	1254
BstF5I	GGATG	4 cut(s)	61, 444, 462, 811
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	115, 308, 1130, 1386
BstMAI	GTCTC	3 cut(s)	127, 809, 1214
BstMBI	GATC	4 cut(s)	112, 305, 1127, 1383
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 420, 656, 1342
BstNSI	RCATGY	3 cut(s)	555, 764, 1162
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	5 cut(s)	280, 423, 466, 634, 1149
BstV2I	GAAGAC	2 cut(s)	87, 1085
BstX2I	RGATCY	3 cut(s)	112, 305, 1127
BstYI	RGATCY	3 cut(s)	112, 305, 1127
BstZ17I	GTATAC	1 cut(s)	1350
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	846, 1253, 1336
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	1254
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	61, 444, 462, 811
BtsI	GCAGTG	2 cut(s)	657, 1086
BtsIMutI	CAGTG	6 cut(s)	657, 691, 717, 1086, 1136, 1206
Cac8I	GCNNGC	2 cut(s)	657, 1160
CaiI	CAGNNNCTG	1 cut(s)	1130
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	467, 1196, 1334
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	34, 279, 522
CviQI	GTAC	3 cut(s)	34, 279, 522
DdeI	CTNAG	5 cut(s)	60, 85, 261, 829, 1139
DpnI	GATC	4 cut(s)	114, 307, 1129, 1385
DpnII	GATC	4 cut(s)	112, 305, 1127, 1383
DraI	TTTAAA	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	2 cut(s)	706, 1388
EarI	CTCTTC	2 cut(s)	706, 1388
EciI	GGCGGA	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	235, 594, 1254
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	467, 1196
Eco57I	CTGAAG	3 cut(s)	741, 747, 945
EcoT14I	CCWWGG	3 cut(s)	235, 594, 1254
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	3 cut(s)	235, 594, 1254
Esp3I	CGTCTC	1 cut(s)	127
FauI	CCCGC	1 cut(s)	609
FauNDI	CATATG	1 cut(s)	150
FblI	GTMKAC	2 cut(s)	875, 1349
Fnu4HI	GCNGC	7 cut(s)	162, 294, 412, 480, 648, 847, 1163
FokI	GGATG	4 cut(s)	68, 451, 469, 818
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	7 cut(s)	162, 294, 412, 480, 648, 847, 1163
FspBI	CTAG	4 cut(s)	215, 329, 431, 1206
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	7 cut(s)	162, 294, 412, 480, 648, 847, 1163
GsaI	CCCAGC	1 cut(s)	1236
GsuI	CTGGAG	2 cut(s)	1152, 1343
HaeIII	GGCC	3 cut(s)	846, 1253, 1336
HgaI	GACGC	1 cut(s)	523
HhaI	GCGC	1 cut(s)	370
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	2 cut(s)	946, 1034
HinfI	GANTC	7 cut(s)	83, 250, 325, 427, 685, 1090, 1141
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	3 cut(s)	876, 1288, 1350
Hpy188I	TCNGA	8 cut(s)	197, 375, 496, 796, 832, 964, 986, 1222
Hpy188III	TCNNGA	6 cut(s)	230, 329, 703, 1125, 1131, 1430
Hpy8I	GTNNAC	3 cut(s)	876, 1288, 1350
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	7 cut(s)	135, 265, 342, 600, 969, 1038, 1243
HpyCH4III	ACNGT	6 cut(s)	363, 640, 820, 840, 937, 1461
HpyCH4IV	ACGT	3 cut(s)	47, 136, 281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 420, 656, 1342
HpyF3I	CTNAG	5 cut(s)	60, 85, 261, 829, 1139
HpySE526I	ACGT	3 cut(s)	47, 136, 281
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	112, 305, 1127, 1383
LmnI	GCTCC	4 cut(s)	755, 1106, 1133, 1190
Lsp1109I	GCAGC	5 cut(s)	280, 423, 466, 634, 1149
LweI	GCATC	5 cut(s)	10, 46, 231, 352, 398
MaeI	CTAG	4 cut(s)	215, 329, 431, 1206
MaeII	ACGT	3 cut(s)	47, 136, 281
MaeIII	GTNAC	3 cut(s)	43, 535, 1422
MalI	GATC	4 cut(s)	114, 307, 1129, 1385
MboI	GATC	4 cut(s)	112, 305, 1127, 1383
MboII	GAAGA	9 cut(s)	89, 92, 162, 723, 1046, 1053, 1085, 1220, 1405
MfeI	CAATTG	1 cut(s)	1008
MflI	RGATCY	3 cut(s)	112, 305, 1127
MhlI	GDGCHC	3 cut(s)	574, 760, 1138
MluCI	AATT	9 cut(s)	543, 734, 767, 782, 809, 1008, 1224, 1434, 1440
MlyI	GAGTC	4 cut(s)	77, 694, 1099, 1150
MmeI	TCCRAC	4 cut(s)	283, 382, 427, 964
MnlI	CCTC	9 cut(s)	45, 55, 480, 699, 701, 707, 746, 794, 940
MroXI	GAANNNNTTC	3 cut(s)	124, 254, 1227
MseI	TTAA	3 cut(s)	204, 765, 942
MslI	CAYNNNNRTG	3 cut(s)	18, 1079, 1271
MspA1I	CMGCKG	2 cut(s)	89, 898
MunI	CAATTG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	353
MwoI	GCNNNNNNNGC	4 cut(s)	29, 420, 656, 1342
NcoI	CCATGG	1 cut(s)	1254
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	4 cut(s)	112, 305, 1127, 1383
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	3 cut(s)	43, 535, 1422
NspI	RCATGY	3 cut(s)	555, 764, 1162
PaeI	GCATGC	1 cut(s)	1162
PciI	ACATGT	2 cut(s)	551, 760
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	3 cut(s)	124, 254, 1227
PfeI	GAWTC	3 cut(s)	250, 325, 427
PkrI	GCNGC	7 cut(s)	163, 295, 413, 481, 649, 848, 1164
PleI	GAGTC	4 cut(s)	77, 693, 1098, 1149
PpsI	GAGTC	4 cut(s)	77, 693, 1098, 1149
Ppu21I	YACGTR	1 cut(s)	282
PscI	ACATGT	2 cut(s)	551, 760
PspFI	CCCAGC	1 cut(s)	1232
PspPI	GGNCC	3 cut(s)	467, 1196, 1334
PsrI	GAACNNNNNNTAC	2 cut(s)	624, 656
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	1130
PsuI	RGATCY	3 cut(s)	112, 305, 1127
PvuII	CAGCTG	2 cut(s)	89, 898
RsaI	GTAC	3 cut(s)	35, 280, 523
RsaNI	GTAC	3 cut(s)	34, 279, 522
RseI	CAYNNNNRTG	3 cut(s)	18, 1079, 1271
SaqAI	TTAA	3 cut(s)	204, 765, 942
SatI	GCNGC	7 cut(s)	162, 294, 412, 480, 648, 847, 1163
Sau3AI	GATC	4 cut(s)	112, 305, 1127, 1383
Sau96I	GGNCC	3 cut(s)	467, 1196, 1334
SchI	GAGTC	4 cut(s)	77, 694, 1099, 1150
SduI	GDGCHC	3 cut(s)	574, 760, 1138
SfaNI	GCATC	5 cut(s)	10, 46, 231, 352, 398
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	2 cut(s)	467, 1196
SmiMI	CAYNNNNRTG	3 cut(s)	18, 1079, 1271
SphI	GCATGC	1 cut(s)	1162
Sse9I	AATT	9 cut(s)	543, 734, 767, 782, 809, 1008, 1224, 1434, 1440
SsiI	CCGC	5 cut(s)	4, 161, 436, 616, 847
SspMI	CTAG	4 cut(s)	215, 329, 431, 1206
StyI	CCWWGG	3 cut(s)	235, 594, 1254
TaaI	ACNGT	6 cut(s)	363, 640, 820, 840, 937, 1461
TaiI	ACGT	3 cut(s)	50, 139, 284
TaqI	TCGA	3 cut(s)	50, 346, 392
TasI	AATT	9 cut(s)	543, 734, 767, 782, 809, 1008, 1224, 1434, 1440
TauI	GCSGC	2 cut(s)	164, 849
TfiI	GAWTC	3 cut(s)	250, 325, 427
Tru1I	TTAA	3 cut(s)	204, 765, 942
Tru9I	TTAA	3 cut(s)	204, 765, 942
TscAI	CASTG	6 cut(s)	657, 698, 724, 1086, 1143, 1206
TseFI	GTSAC	3 cut(s)	43, 535, 1422
TseI	GCWGC	5 cut(s)	293, 411, 479, 647, 1162
Tsp45I	GTSAC	3 cut(s)	43, 535, 1422
TspDTI	ATGAA	6 cut(s)	117, 162, 222, 568, 822, 856
TspRI	CASTG	6 cut(s)	657, 698, 724, 1086, 1143, 1206
VpaK11BI	GGWCC	2 cut(s)	467, 1196
XapI	RAATTY	3 cut(s)	734, 767, 1224
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	3 cut(s)	555, 764, 1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	2 cut(s)	875, 1349
XmnI	GAANNNNTTC	3 cut(s)	124, 254, 1227
XspI	CTAG	4 cut(s)	215, 329, 431, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.