FvH4_6g31860

Malonate--CoA

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24938898 .. 24945209
6312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31860.t1

Sequence Viewer

Length: 1617 bp
ATGAGCTCCACCACCCCTCCTTTATTTAAAGTTATCAACTACTTCTCCAGGTCCCTCTTCTCCTATTCTTCTCATTCATCTCCTTCCCGTTTCATCTATCTCGCTAGAACCAACCCTTTGCTCTGCTTATCTCACTCTCGCCTCCTCTCTTCCTTGCAATCTGGTTCATCTATGGAGGTGGTAGAAGTACCTAGTCACGGTTCTGGAACTCAGGATAGTATTGCTGTTAGATCAGATAACAGAAGTTACAGTTACAATCAACTAATATCTTCTGCACGGAGTATATCTGGCTTATTATGCAATGGTGACTTAAACACTTCCAAAGCAAAACCTGATGGTGCACGAGGACTTGGGCATCTTAGAGGGGCTCGAATAGGTATTGTGGCCAAGCCCTCTGCTGAATTTGTCGCTGGTATACTAGGGACCTGGCTTAGTGGAGGTGTTGCAGTTCCACTTGCTCTGAGCTACCCTGAGGCTGAGCTCTTGCATGTGATGAATGATTCAGACATCTCCATGGTATTGAGTACTGAAGACCACCATCAACTTATGGAAAACATTGCTGCTAAATGTGCTGCTCAGTTGTCTCTTATTCCACCAGTTCCCAGTAGTAGTACTTCACATGCAAGTGCAGATAGTCATTTACAGGCAGGAGAAGTAGATGCAGATACAATTTTTCACAGGAATGGAAAGCAATCAAGTGAGGATCCAGCATTAATAATATACACCAGTGGTACAACGGGTAAACCTAAAGGAGTTGTTCACACTCACAGCAGCATCAGTGCACAGGTCCAAACCTTGGCAGACTCGTGGGAGTATTCATCTGCTGATCAGTTTTTGCATTGTCTACCACTACATCACGTCCATGGGCTTTTCAATGCTCTACTTGCCCCTCTGTATGCAGGTTCCACGGTTGAGTTTATGCCAAAATTTAGTGTGAGGGGTATTTGGCAAAGATGGCGTGAAGCATATCCAAAAAATGGAATAAAGGCAGATGATGGCATAACTGTCTTTACTGGAGTTCCGACCATGTATACTCGATTGATACAAGCTCATGAAGCCATGGATGCAGAGCTAAAAGCTGCATCTGCCTATGCTGCAAAACAGTTGCGTCTTATGATGTGTGGTTCCTCTGCACTCCCTGTTCCTGTGATGCAGCAGTGGGAAACTATCACAGGGCATCGTCTTTTGGAACGATATGGCATGACAGAGTTTGTGATGGCAATATCAAATCCCTTCAGAGGTGAACGAAAGGCAGGCACGGTTGGAAAACCATTCCCTGGTGTGGAGGTAAAGATCATTGCAGAAGATGATAGTAAAACAGATACGACAGGGGTGGGTGAGCTTTGTGTTAGAAGCCCTTCATTGTTCAAGGAATATTGGAAACTTCCTGAGGTAACAAGAGAATCATTTACAAATGATGGGTTCTTCAAGACTGGTGATGCTGGCACAGTGGATAATGATGGCTACTACATCATATTAGGACGTACAAGTGCTGATATAATGAAGGTTGGTGGATACAAGTTATCAGCGTTAGAAATTGAATCAATTCTTTTAGAGAACCACCGCTTTCGTGTAGCACCCATCTGTAGAGGAGTGTTGTGTATTGGGCTTACCTGA

Protein Analysis

539

Amino Acids

58.38

Weight (kDa)

6.68

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 116 - 460 6.2e-74 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccB7I CCANNNNNTGG 3 cut(s) 796, 977, 1277
AccI GTMKAC 3 cut(s) 415, 844, 1031
AciI CCGC 1 cut(s) 1564
AclWI GGATC 2 cut(s) 698, 711
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 401, 926
AcuI CTGAAG 2 cut(s) 549, 1219
AfaI GTAC 5 cut(s) 189, 526, 613, 733, 1486
AfiI CCNNNNNNNGG 6 cut(s) 197, 796, 977, 1238, 1277, 1282
AgsI TTSAA 4 cut(s) 874, 1369, 1429, 1541
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 3 cut(s) 47, 425, 1276
AluBI AGCT 7 cut(s) 6, 465, 481, 1049, 1072, 1079, 1342
AluI AGCT 7 cut(s) 6, 465, 481, 1049, 1072, 1079, 1342
Alw21I GWGCWC 4 cut(s) 8, 343, 483, 784
Alw26I GTCTC 1 cut(s) 588
Alw44I GTGCAC 2 cut(s) 339, 780
AlwI GGATC 2 cut(s) 698, 711
AoxI GGCC 1 cut(s) 384
ApaLI GTGCAC 2 cut(s) 339, 780
ApeKI GCWGC 6 cut(s) 560, 572, 771, 1079, 1094, 1153
ApoI RAATTY 2 cut(s) 401, 926
AseI ATTAAT 1 cut(s) 713
Asp700I GAANNNNTTC 2 cut(s) 1357, 1545
AspS9I GGNCC 3 cut(s) 51, 423, 787
AsuHPI GGTGA 4 cut(s) 317, 1253, 1349, 1448
AvaII GGWCC 3 cut(s) 51, 423, 787
AxyI CCTNAGG 2 cut(s) 471, 1389
BaeGI GKGCMC 2 cut(s) 343, 784
BalI TGGCCA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 703
BanII GRGCYC 3 cut(s) 8, 370, 483
BarI GAAGNNNNNNTAC 2 cut(s) 598, 630
BauI CACGAG 2 cut(s) 342, 805
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 4 cut(s) 8, 343, 483, 784
BbvI GCAGC 6 cut(s) 547, 559, 783, 1066, 1081, 1165
BccI CCATC 8 cut(s) 329, 546, 948, 989, 1210, 1412, 1454, 1589
BciT130I CCWGG 3 cut(s) 49, 427, 1278
BciVI GTATCC 1 cut(s) 1508
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 3 cut(s) 105, 192, 419
BfmI CTRYAG 1 cut(s) 1585
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 1 cut(s) 1508
BisI GCNGC 6 cut(s) 561, 573, 772, 1080, 1095, 1154
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 6 cut(s) 562, 574, 773, 1081, 1096, 1155
BmcAI AGTACT 2 cut(s) 526, 613
Bme1390I CCNGG 3 cut(s) 49, 427, 1278
Bme18I GGWCC 3 cut(s) 51, 423, 787
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 3 cut(s) 51, 423, 787
BmiI GGNNCC 5 cut(s) 53, 424, 705, 904, 1126
BmrFI CCNGG 3 cut(s) 49, 427, 1278
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 8 cut(s) 364, 649, 783, 1054, 1091, 1140, 1186, 1429
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 2 cut(s) 31, 1035
Bpu1102I GCTNAGC 1 cut(s) 477
BsaJI CCNNGG 6 cut(s) 513, 795, 862, 906, 1059, 1276
BsaXI ACNNNNNCTCC 3 cut(s) 29, 31, 59
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 796, 977, 1238, 1277, 1282
Bse1I ACTGG 5 cut(s) 596, 603, 726, 1018, 1438
Bse21I CCTNAGG 2 cut(s) 471, 1389
Bse3DI GCAATG 3 cut(s) 307, 555, 1296
BseBI CCWGG 3 cut(s) 49, 427, 1278
BseDI CCNNGG 6 cut(s) 513, 795, 862, 906, 1059, 1276
BseGI GGATG 1 cut(s) 1069
BseLI CCNNNNNNNGG 6 cut(s) 197, 796, 977, 1238, 1277, 1282
BseMI GCAATG 3 cut(s) 307, 555, 1296
BseMII CTCAG 6 cut(s) 224, 452, 462, 468, 590, 1380
BseNI ACTGG 5 cut(s) 596, 603, 726, 1018, 1438
BseRI GAGGAG 2 cut(s) 134, 1605
BseSI GKGCMC 2 cut(s) 343, 784
BseXI GCAGC 6 cut(s) 547, 559, 783, 1066, 1081, 1165
BsgI GTGCAG 3 cut(s) 258, 648, 1116
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 4 cut(s) 8, 343, 483, 784
BslFI GGGAC 2 cut(s) 37, 436
BslI CCNNNNNNNGG 6 cut(s) 197, 796, 977, 1238, 1277, 1282
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 37, 436
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 5 cut(s) 8, 343, 370, 483, 784
Bsp143I GATC 4 cut(s) 230, 703, 826, 1293
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp19I CCATGG 3 cut(s) 513, 862, 1059
BspACI CCGC 1 cut(s) 1564
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 6 cut(s) 223, 453, 463, 469, 589, 1381
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 5 cut(s) 53, 424, 705, 904, 1126
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 2 cut(s) 698, 711
BsrDI GCAATG 3 cut(s) 307, 555, 1296
BsrI ACTGG 5 cut(s) 596, 603, 726, 1018, 1438
BssECI CCNNGG 6 cut(s) 513, 795, 862, 906, 1059, 1276
BssMI GATC 4 cut(s) 230, 703, 826, 1293
BssNAI GTATAC 2 cut(s) 416, 1032
BssSI CACGAG 2 cut(s) 342, 805
BssT1I CCWWGG 4 cut(s) 513, 795, 862, 1059
Bst1107I GTATAC 2 cut(s) 416, 1032
Bst2BI CACGAG 2 cut(s) 342, 805
Bst2UI CCWGG 3 cut(s) 49, 427, 1278
Bst4CI ACNGT 7 cut(s) 200, 251, 910, 1006, 1104, 1261, 1450
Bst6I CTCTTC 2 cut(s) 62, 154
BstC8I GCNNGC 2 cut(s) 1255, 1444
BstDEI CTNAG 8 cut(s) 210, 359, 431, 461, 471, 477, 576, 1389
BstDSI CCRYGG 4 cut(s) 513, 862, 906, 1059
BstF5I GGATG 1 cut(s) 1069
BstKTI GATC 4 cut(s) 233, 706, 829, 1296
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 4 cut(s) 230, 703, 826, 1293
BstMWI GCNNNNNNNGC 8 cut(s) 297, 569, 884, 955, 1055, 1064, 1085, 1094
BstNI CCWGG 3 cut(s) 49, 427, 1278
BstNSI RCATGY 2 cut(s) 491, 623
BstSCI CCNGG 3 cut(s) 47, 425, 1276
BstSFI CTRYAG 1 cut(s) 1585
BstSLI GKGCMC 2 cut(s) 343, 784
BstV1I GCAGC 6 cut(s) 547, 559, 783, 1066, 1081, 1165
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BstZ17I GTATAC 2 cut(s) 416, 1032
Bsu36I CCTNAGG 2 cut(s) 471, 1389
BsuI GTATCC 1 cut(s) 1508
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 4 cut(s) 513, 862, 906, 1059
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 1 cut(s) 1069
BtsI GCAGTG 1 cut(s) 1163
BtsIMutI CAGTG 4 cut(s) 733, 784, 1163, 1455
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 2 cut(s) 1255, 1444
CciI TCATGA 1 cut(s) 1051
Cfr13I GGNCC 3 cut(s) 51, 423, 787
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 5 cut(s) 188, 525, 612, 732, 1485
CviAII CATG 8 cut(s) 488, 514, 620, 863, 1027, 1052, 1060, 1201
CviQI GTAC 5 cut(s) 188, 525, 612, 732, 1485
DdeI CTNAG 8 cut(s) 210, 359, 431, 461, 471, 477, 576, 1389
DpnI GATC 4 cut(s) 232, 705, 828, 1295
DpnII GATC 4 cut(s) 230, 703, 826, 1293
DraI TTTAAA 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 62, 154
EarI CTCTTC 2 cut(s) 62, 154
Ecl136II GAGCTC 2 cut(s) 6, 481
Eco130I CCWWGG 4 cut(s) 513, 795, 862, 1059
Eco24I GRGCYC 3 cut(s) 8, 370, 483
Eco47I GGWCC 3 cut(s) 51, 423, 787
Eco53kI GAGCTC 2 cut(s) 6, 481
Eco57I CTGAAG 2 cut(s) 549, 1219
Eco81I CCTNAGG 2 cut(s) 471, 1389
EcoICRI GAGCTC 2 cut(s) 6, 481
EcoO109I RGGNCCY 2 cut(s) 51, 423
EcoRII CCWGG 3 cut(s) 47, 425, 1276
EcoT14I CCWWGG 4 cut(s) 513, 795, 862, 1059
EcoT38I GRGCYC 3 cut(s) 8, 370, 483
ErhI CCWWGG 4 cut(s) 513, 795, 862, 1059
FaeI CATG 8 cut(s) 491, 517, 623, 866, 1030, 1055, 1063, 1204
FaqI GGGAC 2 cut(s) 37, 436
FatI CATG 8 cut(s) 487, 513, 619, 862, 1026, 1051, 1059, 1200
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 3 cut(s) 415, 844, 1031
Fnu4HI GCNGC 6 cut(s) 561, 573, 772, 1080, 1095, 1154
FokI GGATG 1 cut(s) 1076
FriOI GRGCYC 3 cut(s) 8, 370, 483
Fsp4HI GCNGC 6 cut(s) 561, 573, 772, 1080, 1095, 1154
FspBI CTAG 3 cut(s) 105, 192, 419
GluI GCNGC 6 cut(s) 561, 573, 772, 1080, 1095, 1154
GsuI CTGGAG 2 cut(s) 31, 1035
HaeIII GGCC 1 cut(s) 386
HgaI GACGC 1 cut(s) 1097
Hin1II CATG 8 cut(s) 491, 517, 623, 866, 1030, 1055, 1063, 1204
HinfI GANTC 4 cut(s) 500, 803, 1403, 1541
HphI GGTGA 4 cut(s) 317, 1253, 1349, 1448
Hpy166II GTNNAC 8 cut(s) 341, 416, 743, 760, 782, 845, 1032, 1244
Hpy188I TCNGA 5 cut(s) 235, 462, 505, 1023, 1238
Hpy188III TCNNGA 5 cut(s) 204, 212, 1052, 1388, 1429
Hpy8I GTNNAC 8 cut(s) 341, 416, 743, 760, 782, 845, 1032, 1244
HpyAV CCTTC 4 cut(s) 93, 1243, 1368, 1498
HpyCH4III ACNGT 7 cut(s) 200, 251, 910, 1006, 1104, 1261, 1450
HpyCH4IV ACGT 2 cut(s) 858, 1483
HpyF10VI GCNNNNNNNGC 8 cut(s) 297, 569, 884, 955, 1055, 1064, 1085, 1094
HpyF3I CTNAG 8 cut(s) 210, 359, 431, 461, 471, 477, 576, 1389
HpySE526I ACGT 2 cut(s) 858, 1483
Hsp92II CATG 8 cut(s) 491, 517, 623, 866, 1030, 1055, 1063, 1204
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 230, 703, 826, 1293
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 6 cut(s) 547, 559, 783, 1066, 1081, 1165
LweI GCATC 8 cut(s) 364, 649, 783, 1054, 1091, 1140, 1186, 1429
MaeI CTAG 3 cut(s) 105, 192, 419
MaeII ACGT 2 cut(s) 858, 1483
MaeIII GTNAC 5 cut(s) 194, 245, 251, 305, 1393
MalI GATC 4 cut(s) 232, 705, 828, 1295
MboI GATC 4 cut(s) 230, 703, 826, 1293
MboII GAAGA 7 cut(s) 49, 60, 141, 261, 542, 1316, 1417
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 5 cut(s) 8, 343, 370, 483, 784
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 5 cut(s) 401, 669, 926, 1536, 1545
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 1046, 1243
Mox20I TGGCCA 1 cut(s) 386
MroXI GAANNNNTTC 2 cut(s) 1357, 1545
MscI TGGCCA 1 cut(s) 386
MseI TTAA 3 cut(s) 27, 311, 713
MslI CAYNNNNRTG 4 cut(s) 512, 624, 681, 861
Msp20I TGGCCA 1 cut(s) 386
MspR9I CCNGG 3 cut(s) 49, 427, 1278
MvaI CCWGG 3 cut(s) 49, 427, 1278
MwoI GCNNNNNNNGC 8 cut(s) 297, 569, 884, 955, 1055, 1064, 1085, 1094
NcoI CCATGG 3 cut(s) 513, 862, 1059
NdeII GATC 4 cut(s) 230, 703, 826, 1293
NlaIII CATG 8 cut(s) 491, 517, 623, 866, 1030, 1055, 1063, 1204
NlaIV GGNNCC 5 cut(s) 53, 424, 705, 904, 1126
NmuCI GTSAC 2 cut(s) 194, 305
NspI RCATGY 2 cut(s) 491, 623
PagI TCATGA 1 cut(s) 1051
PdmI GAANNNNTTC 2 cut(s) 1357, 1545
PfeI GAWTC 3 cut(s) 500, 1403, 1541
PflMI CCANNNNNTGG 3 cut(s) 796, 977, 1277
PkrI GCNGC 6 cut(s) 562, 574, 773, 1081, 1096, 1155
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PpuMI RGGWCCY 2 cut(s) 51, 423
PshBI ATTAAT 1 cut(s) 713
Psp124BI GAGCTC 2 cut(s) 8, 483
Psp5II RGGWCCY 2 cut(s) 51, 423
Psp6I CCWGG 3 cut(s) 47, 425, 1276
PspGI CCWGG 3 cut(s) 47, 425, 1276
PspN4I GGNNCC 5 cut(s) 53, 424, 705, 904, 1126
PspPI GGNCC 3 cut(s) 51, 423, 787
PspPPI RGGWCCY 2 cut(s) 51, 423
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 5 cut(s) 189, 526, 613, 733, 1486
RsaNI GTAC 5 cut(s) 188, 525, 612, 732, 1485
RseI CAYNNNNRTG 4 cut(s) 512, 624, 681, 861
SacI GAGCTC 2 cut(s) 8, 483
SaqAI TTAA 3 cut(s) 27, 311, 713
SatI GCNGC 6 cut(s) 561, 573, 772, 1080, 1095, 1154
Sau3AI GATC 4 cut(s) 230, 703, 826, 1293
Sau96I GGNCC 3 cut(s) 51, 423, 787
ScaI AGTACT 2 cut(s) 526, 613
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 49, 427, 1278
SduI GDGCHC 5 cut(s) 8, 343, 370, 483, 784
SfaNI GCATC 8 cut(s) 364, 649, 783, 1054, 1091, 1140, 1186, 1429
SfcI CTRYAG 1 cut(s) 1585
SinI GGWCC 3 cut(s) 51, 423, 787
SmiMI CAYNNNNRTG 4 cut(s) 512, 624, 681, 861
Sse9I AATT 5 cut(s) 401, 669, 926, 1536, 1545
SsiI CCGC 1 cut(s) 1564
SspI AATATT 1 cut(s) 1376
SspMI CTAG 3 cut(s) 105, 192, 419
SstI GAGCTC 2 cut(s) 8, 483
StyD4I CCNGG 3 cut(s) 47, 425, 1276
StyI CCWWGG 4 cut(s) 513, 795, 862, 1059
TaaI ACNGT 7 cut(s) 200, 251, 910, 1006, 1104, 1261, 1450
TaiI ACGT 2 cut(s) 861, 1486
TaqI TCGA 2 cut(s) 370, 1036
TasI AATT 5 cut(s) 401, 669, 926, 1536, 1545
TatI WGTACW 2 cut(s) 524, 611
TfiI GAWTC 3 cut(s) 500, 1403, 1541
Tru1I TTAA 3 cut(s) 27, 311, 713
Tru9I TTAA 3 cut(s) 27, 311, 713
TscAI CASTG 4 cut(s) 733, 784, 1163, 1455
TseFI GTSAC 2 cut(s) 194, 305
TseI GCWGC 6 cut(s) 560, 572, 771, 1079, 1094, 1153
Tsp45I GTSAC 2 cut(s) 194, 305
TspDTI ATGAA 8 cut(s) 66, 82, 156, 509, 807, 1068, 1350, 1517
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 4 cut(s) 733, 784, 1163, 1455
Van91I CCANNNNNTGG 3 cut(s) 796, 977, 1277
VneI GTGCAC 2 cut(s) 339, 780
VpaK11BI GGWCC 3 cut(s) 51, 423, 787
VspI ATTAAT 1 cut(s) 713
XapI RAATTY 2 cut(s) 401, 926
XceI RCATGY 2 cut(s) 491, 623
XmiI GTMKAC 3 cut(s) 415, 844, 1031
XmnI GAANNNNTTC 2 cut(s) 1357, 1545
XspI CTAG 3 cut(s) 105, 192, 419
ZrmI AGTACT 2 cut(s) 526, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.