Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012067.1

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3235

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 982 bp

ccatgggcttttcaatgctgtacttgcccctctgtatgcaggttccacggttgagtttatgccgaagtttagtgtgaggggtatttggcaaagatggcgtgaagcatatccaaaaaatggaactaaggcagatgagggcataactgtctttactggagtaccgaccatgtatactcgattgatacaagctcatgaagccatggatgcggagctaaaagctgcgtctgcctatgctgcacaacagttgcgtcttatgatgtgtggttcctctgcactccctgttcctgtaatgcagcaatgggaaactatcacagggcatcgtcttcttgaacgatacggcatgacagagtttgtgatggcaatatcaaatcccttcagaggtgaacggaaggcaggcacggttggaaaaccatttcctggtgtggaggtaaagatcgttacagaagatgatagcaaaagtgatatgatggtggtgggtgagctttgcattagaagcccttcattgttcaaggaatattggaaacttcctgaggtaactagagaatcatttacaaatgatgggttcttcaagacaggagatgctggtacagtggataaagatggctactacatcatattgggacgtacaagtgctgatataatgaaggttggtggatacaagttatcagcgttagaaattgaatcaattcttttagagcacccatctgtagaggagtgttgtgtattgggcttacctgacaaagattatggagaaattgtctgtgcaatagtagtgccagatgtggaagcaaagaggaaacaagaggaagaaaagagacctgccataagcttggaagagctatgctctggggctaaacacaaacttgcaccatacaagctaccaacacgactttttgtgtgggattcactgcctcgtaatgctatggggaaggtgaataagaaggagttgaagaaagttctggcttctgatcaacagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

326

Amino Acids

36.35

Weight (kDa)

6.62

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	30, 827
AccB7I	CCANNNNNTGG	2 cut(s)	117, 417
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	22, 160, 587, 626
AfiI	CCNNNNNNNGG	3 cut(s)	117, 378, 417
AgsI	TTSAA	6 cut(s)	14, 330, 509, 569, 681, 950
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	7 cut(s)	189, 212, 219, 482, 829, 839, 878
AluI	AGCT	7 cut(s)	189, 212, 219, 482, 829, 839, 878
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	809
ApeKI	GCWGC	3 cut(s)	219, 234, 293
Asp700I	GAANNNNTTC	2 cut(s)	497, 685
AsuHPI	GGTGA	3 cut(s)	393, 489, 944
AxyI	CCTNAGG	1 cut(s)	529
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	3 cut(s)	206, 221, 305
BccI	CCATC	6 cut(s)	88, 350, 461, 552, 594, 710
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	968
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	1 cut(s)	538
BfmI	CTRYAG	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	30, 827
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	220, 235, 294
BlsI	GCNGC	3 cut(s)	221, 236, 295
Bme1390I	CCNGG	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	44, 266
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	3 cut(s)	194, 326, 569
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	828, 860
BpmI	CTGGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	809
BsaJI	CCNNGG	3 cut(s)	2, 46, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 378, 417
Bse1I	ACTGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	3 cut(s)	2, 46, 199
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	3 cut(s)	117, 378, 417
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	726
BseXI	GCAGC	3 cut(s)	206, 221, 305
BsgI	GTGCAG	2 cut(s)	220, 256
BsiHKAI	GWGCWC	1 cut(s)	700
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	3 cut(s)	117, 378, 417
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	634
Bso31I	GGTCTC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	433, 968
Bsp19I	CCATGG	2 cut(s)	2, 199
BspACI	CCGC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	521
BspHI	TCATGA	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	44, 266
BspMI	ACCTGC	2 cut(s)	30, 827
BspQI	GCTCTTC	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	2, 46, 199
BssMI	GATC	2 cut(s)	433, 968
BssNAI	GTATAC	1 cut(s)	172
BssT1I	CCWWGG	2 cut(s)	2, 199
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	5 cut(s)	50, 146, 244, 401, 590
Bst6I	CTCTTC	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	124, 529
BstDSI	CCRYGG	3 cut(s)	2, 46, 199
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	2 cut(s)	436, 971
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	2 cut(s)	433, 968
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 95, 195, 204, 225, 234, 493
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	3 cut(s)	206, 221, 305
BstV2I	GAAGAC	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstZ17I	GTATAC	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	648
BtgI	CCRYGG	3 cut(s)	2, 46, 199
BtsCI	GGATG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	595, 906
BveI	ACCTGC	2 cut(s)	30, 827
Cac8I	GCNNGC	1 cut(s)	395
CciI	TCATGA	1 cut(s)	191
CseI	GACGC	2 cut(s)	211, 237
Csp6I	GTAC	4 cut(s)	21, 159, 586, 625
CviAII	CATG	5 cut(s)	3, 167, 192, 200, 341
CviQI	GTAC	4 cut(s)	21, 159, 586, 625
DdeI	CTNAG	2 cut(s)	124, 529
DpnI	GATC	2 cut(s)	435, 970
DpnII	GATC	2 cut(s)	433, 968
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	2, 199
Eco31I	GGTCTC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	2, 199
ErhI	CCWWGG	2 cut(s)	2, 199
FaeI	CATG	5 cut(s)	6, 170, 195, 203, 344
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	5 cut(s)	2, 166, 191, 199, 340
FbaI	TGATCA	1 cut(s)	968
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	220, 235, 294
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	220, 235, 294
FspBI	CTAG	1 cut(s)	538
GluI	GCNGC	3 cut(s)	220, 235, 294
GsuI	CTGGAG	1 cut(s)	175
HgaI	GACGC	2 cut(s)	211, 237
Hin1II	CATG	5 cut(s)	6, 170, 195, 203, 344
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	3 cut(s)	543, 681, 903
HphI	GGTGA	3 cut(s)	393, 489, 944
Hpy166II	GTNNAC	2 cut(s)	172, 384
Hpy188I	TCNGA	2 cut(s)	378, 968
Hpy188III	TCNNGA	4 cut(s)	192, 327, 528, 569
Hpy8I	GTNNAC	2 cut(s)	172, 384
HpyAV	CCTTC	6 cut(s)	383, 383, 508, 638, 923, 935
HpyCH4III	ACNGT	5 cut(s)	50, 146, 244, 401, 590
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	7 cut(s)	39, 237, 273, 293, 487, 765, 867
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 95, 195, 204, 225, 234, 493
HpyF3I	CTNAG	2 cut(s)	124, 529
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	5 cut(s)	6, 170, 195, 203, 344
Ksp22I	TGATCA	1 cut(s)	968
Kzo9I	GATC	2 cut(s)	433, 968
LguI	GCTCTTC	1 cut(s)	829
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	3 cut(s)	206, 221, 305
LweI	GCATC	3 cut(s)	194, 326, 569
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	2 cut(s)	437, 533
MalI	GATC	2 cut(s)	435, 970
MboI	GATC	2 cut(s)	433, 968
MboII	GAAGA	6 cut(s)	315, 456, 557, 819, 846, 962
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	3 cut(s)	676, 685, 754
MmeI	TCCRAC	1 cut(s)	383
MroXI	GAANNNNTTC	2 cut(s)	497, 685
MspR9I	CCNGG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	7 cut(s)	24, 95, 195, 204, 225, 234, 493
NcoI	CCATGG	2 cut(s)	2, 199
NdeII	GATC	2 cut(s)	433, 968
NlaIII	CATG	5 cut(s)	6, 170, 195, 203, 344
NlaIV	GGNNCC	2 cut(s)	44, 266
PagI	TCATGA	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	497, 685
PfeI	GAWTC	3 cut(s)	543, 681, 903
PflMI	CCANNNNNTGG	2 cut(s)	117, 417
PkrI	GCNGC	3 cut(s)	221, 236, 295
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	44, 266
RsaI	GTAC	4 cut(s)	22, 160, 587, 626
RsaNI	GTAC	4 cut(s)	21, 159, 586, 625
SapI	GCTCTTC	1 cut(s)	829
SatI	GCNGC	3 cut(s)	220, 235, 294
Sau3AI	GATC	2 cut(s)	433, 968
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	3 cut(s)	194, 326, 569
SfcI	CTRYAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	676, 685, 754
SsiI	CCGC	1 cut(s)	207
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	2, 199
TaaI	ACNGT	5 cut(s)	50, 146, 244, 401, 590
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	676, 685, 754
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	543, 681, 903
TscAI	CASTG	2 cut(s)	595, 913
TseI	GCWGC	3 cut(s)	219, 234, 293
TspDTI	ATGAA	3 cut(s)	208, 490, 657
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	595, 913
Van91I	CCANNNNNTGG	2 cut(s)	117, 417
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	2 cut(s)	497, 685
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.