Malonate--CoA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16170 |
| fragaria_vesca | FvH4_6g31860 FvH4_6g31860 FvH4_6g31860 |
| malus_domestica | MD09G1208800.v1.1 MD17G1190300.v1.1 |
| prunus_persica | Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1 |
| pyrus_communis | pycom09g12490 pycom17g19780 |
| rosa_chinensis | RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181 |
| rosa_laevigata | RLG00000019793 |
| rosa_multiflora | Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00105570 |
| rosa_rugosa | Rorug02G0355400 |
| rosa_samantha | Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300 |
| rosa_wichuraiana | Rw2G033120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| Acc36I | ACCTGC | 2 cut(s) | 908, 1705 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 995 |
| AccBSI | CCGCTC | 1 cut(s) | 1264 |
| AccI | GTMKAC | 4 cut(s) | 436, 833, 862, 1049 |
| AccII | CGCG | 1 cut(s) | 311 |
| AciI | CCGC | 3 cut(s) | 173, 467, 1264 |
| AclWI | GGATC | 4 cut(s) | 716, 1076, 1089, 1722 |
| AcsI | RAATTY | 3 cut(s) | 422, 687, 944 |
| AcuI | CTGAAG | 8 cut(s) | 62, 79, 327, 513, 570, 618, 1362, 1429 |
| AfaI | GTAC | 6 cut(s) | 547, 751, 900, 1465, 1484, 1504 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 995, 1256, 1295, 1585 |
| AflII | CTTAAG | 1 cut(s) | 1252 |
| AgsI | TTSAA | 7 cut(s) | 307, 856, 892, 1387, 1664, 1785, 1828 |
| AhlI | ACTAGT | 2 cut(s) | 743, 1505 |
| AjnI | CCWGG | 2 cut(s) | 446, 1294 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 299, 331 |
| Alw21I | GWGCWC | 3 cut(s) | 504, 780, 802 |
| Alw26I | GTCTC | 3 cut(s) | 80, 535, 1687 |
| Alw44I | GTGCAC | 2 cut(s) | 776, 798 |
| AlwI | GGATC | 4 cut(s) | 716, 1076, 1089, 1722 |
| AoxI | GGCC | 1 cut(s) | 81 |
| ApaLI | GTGCAC | 2 cut(s) | 776, 798 |
| ApeKI | GCWGC | 6 cut(s) | 347, 581, 593, 1007, 1097, 1112 |
| ApoI | RAATTY | 3 cut(s) | 422, 687, 944 |
| AseI | ATTAAT | 1 cut(s) | 731 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1375, 1563 |
| AspLEI | GCGC | 1 cut(s) | 647 |
| AspS9I | GGNCC | 3 cut(s) | 102, 444, 805 |
| AsuC2I | CCSGG | 1 cut(s) | 1580 |
| AsuHPI | GGTGA | 5 cut(s) | 548, 686, 1271, 1367, 1822 |
| AvaII | GGWCC | 3 cut(s) | 102, 444, 805 |
| AxyI | CCTNAGG | 1 cut(s) | 1407 |
| BaeGI | GKGCMC | 2 cut(s) | 780, 802 |
| BamHI | GGATCC | 1 cut(s) | 1081 |
| BanII | GRGCYC | 1 cut(s) | 504 |
| BauI | CACGAG | 1 cut(s) | 204 |
| Bbv12I | GWGCWC | 3 cut(s) | 504, 780, 802 |
| BbvCI | CCTCAGC | 1 cut(s) | 415 |
| BbvI | GCAGC | 6 cut(s) | 359, 568, 580, 1019, 1084, 1099 |
| BccI | CCATC | 7 cut(s) | 644, 966, 1007, 1193, 1430, 1472, 1795 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 410, 444, 1750, 1784 |
| BciT130I | CCWGG | 2 cut(s) | 448, 1296 |
| BciVI | GTATCC | 1 cut(s) | 1526 |
| BclI | TGATCA | 2 cut(s) | 229, 844 |
| BcnI | CCSGG | 1 cut(s) | 1580 |
| BcoDI | GTCTC | 3 cut(s) | 80, 535, 1687 |
| BcuI | ACTAGT | 2 cut(s) | 743, 1505 |
| BfaI | CTAG | 6 cut(s) | 282, 294, 390, 624, 744, 1506 |
| BfrI | CTTAAG | 1 cut(s) | 1252 |
| BfuAI | ACCTGC | 2 cut(s) | 908, 1705 |
| BfuI | GTATCC | 1 cut(s) | 1526 |
| BisI | GCNGC | 6 cut(s) | 348, 582, 594, 1008, 1098, 1113 |
| BlpI | GCTNAGC | 2 cut(s) | 408, 498 |
| BlsI | GCNGC | 6 cut(s) | 349, 583, 595, 1009, 1099, 1114 |
| BmcAI | AGTACT | 1 cut(s) | 547 |
| Bme1390I | CCNGG | 3 cut(s) | 448, 1296, 1580 |
| Bme18I | GGWCC | 3 cut(s) | 102, 444, 805 |
| BmgT120I | GGNCC | 3 cut(s) | 102, 444, 805 |
| BmiI | GGNNCC | 5 cut(s) | 445, 471, 922, 1083, 1144 |
| BmrFI | CCNGG | 3 cut(s) | 448, 1296, 1580 |
| BmsI | GCATC | 4 cut(s) | 278, 385, 801, 1447 |
| BpmI | CTGGAG | 2 cut(s) | 687, 1473 |
| Bpu10I | CCTNAGC | 2 cut(s) | 415, 814 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 408, 498 |
| BpuEI | CTTGAG | 2 cut(s) | 62, 582 |
| BpuMI | CCSGG | 1 cut(s) | 1580 |
| BsaI | GGTCTC | 1 cut(s) | 1687 |
| BsaJI | CCNNGG | 3 cut(s) | 924, 1416, 1790 |
| BsaWI | WCCGGW | 1 cut(s) | 696 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1620, 1650 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 995, 1256, 1295, 1585 |
| Bse1I | ACTGG | 1 cut(s) | 1456 |
| Bse21I | CCTNAGG | 1 cut(s) | 1407 |
| Bse3DI | GCAATG | 2 cut(s) | 146, 1083 |
| BseBI | CCWGG | 2 cut(s) | 448, 1296 |
| BseDI | CCNNGG | 3 cut(s) | 924, 1416, 1790 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 995, 1256, 1295, 1585 |
| BseMI | GCAATG | 2 cut(s) | 146, 1083 |
| BseMII | CTCAG | 6 cut(s) | 429, 489, 496, 533, 1398, 1682 |
| BseNI | ACTGG | 1 cut(s) | 1456 |
| BseRI | GAGGAG | 1 cut(s) | 1604 |
| BseSI | GKGCMC | 2 cut(s) | 780, 802 |
| BseXI | GCAGC | 6 cut(s) | 359, 568, 580, 1019, 1084, 1099 |
| BsgI | GTGCAG | 1 cut(s) | 1134 |
| Bsh1236I | CGCG | 1 cut(s) | 311 |
| BshFI | GGCC | 1 cut(s) | 83 |
| BsiHKAI | GWGCWC | 3 cut(s) | 504, 780, 802 |
| BsiSI | CCGG | 2 cut(s) | 697, 1580 |
| BslFI | GGGAC | 3 cut(s) | 31, 457, 1512 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 995, 1256, 1295, 1585 |
| BsmAI | GTCTC | 3 cut(s) | 80, 535, 1687 |
| BsmBI | CGTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 3 cut(s) | 31, 457, 1512 |
| BsmI | GAATGC | 1 cut(s) | 1801 |
| BsnI | GGCC | 1 cut(s) | 83 |
| Bso31I | GGTCTC | 1 cut(s) | 1687 |
| Bsp1286I | GDGCHC | 3 cut(s) | 504, 780, 802 |
| Bsp143I | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 408, 498 |
| BspACI | CCGC | 3 cut(s) | 173, 467, 1264 |
| BspANI | GGCC | 1 cut(s) | 83 |
| BspCNI | CTCAG | 6 cut(s) | 428, 490, 495, 534, 1399, 1683 |
| BspFNI | CGCG | 1 cut(s) | 311 |
| BspHI | TCATGA | 1 cut(s) | 1069 |
| BspLI | GGNNCC | 5 cut(s) | 445, 471, 922, 1083, 1144 |
| BspMI | ACCTGC | 2 cut(s) | 908, 1705 |
| BspPI | GGATC | 4 cut(s) | 716, 1076, 1089, 1722 |
| BspTI | CTTAAG | 1 cut(s) | 1252 |
| BspTNI | GGTCTC | 1 cut(s) | 1687 |
| BsrBI | CCGCTC | 1 cut(s) | 1264 |
| BsrDI | GCAATG | 2 cut(s) | 146, 1083 |
| BsrI | ACTGG | 1 cut(s) | 1456 |
| BssECI | CCNNGG | 3 cut(s) | 924, 1416, 1790 |
| BssMI | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| BssNAI | GTATAC | 3 cut(s) | 437, 834, 1050 |
| BssSI | CACGAG | 1 cut(s) | 204 |
| BssT1I | CCWWGG | 1 cut(s) | 1416 |
| Bst1107I | GTATAC | 3 cut(s) | 437, 834, 1050 |
| Bst2BI | CACGAG | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 2 cut(s) | 448, 1296 |
| Bst4CI | ACNGT | 7 cut(s) | 245, 928, 1024, 1122, 1279, 1331, 1468 |
| Bst6I | CTCTTC | 4 cut(s) | 148, 230, 268, 358 |
| BstAFI | CTTAAG | 1 cut(s) | 1252 |
| BstC8I | GCNNGC | 2 cut(s) | 1273, 1610 |
| BstDSI | CCRYGG | 1 cut(s) | 924 |
| BstEII | GGTNACC | 1 cut(s) | 1411 |
| BstFNI | CGCG | 1 cut(s) | 311 |
| BstHHI | GCGC | 1 cut(s) | 647 |
| BstKTI | GATC | 7 cut(s) | 8, 232, 556, 724, 847, 1084, 1717 |
| BstMAI | GTCTC | 3 cut(s) | 80, 535, 1687 |
| BstMBI | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 590, 902, 973, 1073, 1103, 1112 |
| BstNI | CCWGG | 2 cut(s) | 448, 1296 |
| BstNSI | RCATGY | 2 cut(s) | 327, 512 |
| BstPI | GGTNACC | 1 cut(s) | 1411 |
| BstSCI | CCNGG | 3 cut(s) | 446, 1294, 1578 |
| BstSLI | GKGCMC | 2 cut(s) | 780, 802 |
| BstUI | CGCG | 1 cut(s) | 311 |
| BstV1I | GCAGC | 6 cut(s) | 359, 568, 580, 1019, 1084, 1099 |
| BstX2I | RGATCY | 3 cut(s) | 5, 1081, 1714 |
| BstYI | RGATCY | 3 cut(s) | 5, 1081, 1714 |
| BstZ17I | GTATAC | 3 cut(s) | 437, 834, 1050 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1407 |
| BsuI | GTATCC | 1 cut(s) | 1526 |
| BsuRI | GGCC | 1 cut(s) | 83 |
| BtgI | CCRYGG | 1 cut(s) | 924 |
| BtgZI | GCGATG | 1 cut(s) | 1814 |
| BtsIMutI | CAGTG | 3 cut(s) | 802, 1336, 1473 |
| BveI | ACCTGC | 2 cut(s) | 908, 1705 |
| Cac8I | GCNNGC | 2 cut(s) | 1273, 1610 |
| CciI | TCATGA | 1 cut(s) | 1069 |
| CfoI | GCGC | 1 cut(s) | 647 |
| Cfr13I | GGNCC | 3 cut(s) | 102, 444, 805 |
| CseI | GACGC | 3 cut(s) | 62, 686, 1115 |
| Csp6I | GTAC | 6 cut(s) | 546, 750, 899, 1464, 1483, 1503 |
| CviQI | GTAC | 6 cut(s) | 546, 750, 899, 1464, 1483, 1503 |
| DpnI | GATC | 7 cut(s) | 7, 231, 555, 723, 846, 1083, 1716 |
| DpnII | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| DraI | TTTAAA | 1 cut(s) | 22 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| Eam1104I | CTCTTC | 4 cut(s) | 148, 230, 268, 358 |
| EarI | CTCTTC | 4 cut(s) | 148, 230, 268, 358 |
| Ecl136II | GAGCTC | 1 cut(s) | 502 |
| Eco130I | CCWWGG | 1 cut(s) | 1416 |
| Eco147I | AGGCCT | 1 cut(s) | 83 |
| Eco24I | GRGCYC | 1 cut(s) | 504 |
| Eco31I | GGTCTC | 1 cut(s) | 1687 |
| Eco47I | GGWCC | 3 cut(s) | 102, 444, 805 |
| Eco53kI | GAGCTC | 1 cut(s) | 502 |
| Eco57I | CTGAAG | 8 cut(s) | 62, 79, 327, 513, 570, 618, 1362, 1429 |
| Eco81I | CCTNAGG | 1 cut(s) | 1407 |
| Eco91I | GGTNACC | 1 cut(s) | 1411 |
| EcoICRI | GAGCTC | 1 cut(s) | 502 |
| EcoO109I | RGGNCCY | 1 cut(s) | 444 |
| EcoO65I | GGTNACC | 1 cut(s) | 1411 |
| EcoRII | CCWGG | 2 cut(s) | 446, 1294 |
| EcoT14I | CCWWGG | 1 cut(s) | 1416 |
| EcoT22I | ATGCAT | 1 cut(s) | 1173 |
| EcoT38I | GRGCYC | 1 cut(s) | 504 |
| ErhI | CCWWGG | 1 cut(s) | 1416 |
| Esp3I | CGTCTC | 1 cut(s) | 80 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 363, 395, 591, 623, 1725, 1757 |
| FaqI | GGGAC | 3 cut(s) | 31, 457, 1512 |
| FauNDI | CATATG | 1 cut(s) | 838 |
| FbaI | TGATCA | 2 cut(s) | 229, 844 |
| FblI | GTMKAC | 4 cut(s) | 436, 833, 862, 1049 |
| Fnu4HI | GCNGC | 6 cut(s) | 348, 582, 594, 1008, 1098, 1113 |
| FriOI | GRGCYC | 1 cut(s) | 504 |
| Fsp4HI | GCNGC | 6 cut(s) | 348, 582, 594, 1008, 1098, 1113 |
| FspBI | CTAG | 6 cut(s) | 282, 294, 390, 624, 744, 1506 |
| GlaI | GCGC | 1 cut(s) | 646 |
| GluI | GCNGC | 6 cut(s) | 348, 582, 594, 1008, 1098, 1113 |
| GsuI | CTGGAG | 2 cut(s) | 687, 1473 |
| HaeIII | GGCC | 1 cut(s) | 83 |
| HapII | CCGG | 2 cut(s) | 697, 1580 |
| HgaI | GACGC | 3 cut(s) | 62, 686, 1115 |
| HhaI | GCGC | 1 cut(s) | 647 |
| Hin6I | GCGC | 1 cut(s) | 645 |
| HinP1I | GCGC | 1 cut(s) | 645 |
| HindIII | AAGCTT | 2 cut(s) | 822, 1705 |
| HpaII | CCGG | 2 cut(s) | 697, 1580 |
| HphI | GGTGA | 5 cut(s) | 548, 686, 1271, 1367, 1822 |
| Hpy166II | GTNNAC | 7 cut(s) | 437, 778, 800, 834, 863, 1050, 1471 |
| Hpy188III | TCNNGA | 6 cut(s) | 206, 491, 853, 1070, 1085, 1406 |
| Hpy8I | GTNNAC | 7 cut(s) | 437, 778, 800, 834, 863, 1050, 1471 |
| HpyAV | CCTTC | 4 cut(s) | 93, 1261, 1386, 1516 |
| HpyCH4III | ACNGT | 7 cut(s) | 245, 928, 1024, 1122, 1279, 1331, 1468 |
| HpyCH4IV | ACGT | 1 cut(s) | 1501 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 590, 902, 973, 1073, 1103, 1112 |
| HpySE526I | ACGT | 1 cut(s) | 1501 |
| HspAI | GCGC | 1 cut(s) | 645 |
| Ksp22I | TGATCA | 2 cut(s) | 229, 844 |
| Kzo9I | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| Lsp1109I | GCAGC | 6 cut(s) | 359, 568, 580, 1019, 1084, 1099 |
| LweI | GCATC | 4 cut(s) | 278, 385, 801, 1447 |
| MaeI | CTAG | 6 cut(s) | 282, 294, 390, 624, 744, 1506 |
| MaeII | ACGT | 1 cut(s) | 1501 |
| MaeIII | GTNAC | 7 cut(s) | 181, 206, 239, 245, 299, 716, 1411 |
| MalI | GATC | 7 cut(s) | 7, 231, 555, 723, 846, 1083, 1716 |
| MbiI | CCGCTC | 1 cut(s) | 1264 |
| MboI | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| MfeI | CAATTG | 1 cut(s) | 351 |
| MflI | RGATCY | 3 cut(s) | 5, 1081, 1714 |
| MhlI | GDGCHC | 3 cut(s) | 504, 780, 802 |
| MluCI | AATT | 9 cut(s) | 351, 399, 422, 655, 687, 732, 856, 944, 1632 |
| MmeI | TCCRAC | 2 cut(s) | 1064, 1261 |
| Mph1103I | ATGCAT | 1 cut(s) | 1173 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1375, 1563 |
| MseI | TTAA | 3 cut(s) | 21, 731, 1253 |
| MslI | CAYNNNNRTG | 1 cut(s) | 879 |
| MspA1I | CMGCKG | 2 cut(s) | 40, 1010 |
| MspCI | CTTAAG | 1 cut(s) | 1252 |
| MspI | CCGG | 2 cut(s) | 697, 1580 |
| MspR9I | CCNGG | 3 cut(s) | 448, 1296, 1580 |
| MunI | CAATTG | 1 cut(s) | 351 |
| Mva1269I | GAATGC | 1 cut(s) | 1801 |
| MvaI | CCWGG | 2 cut(s) | 448, 1296 |
| MvnI | CGCG | 1 cut(s) | 311 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 590, 902, 973, 1073, 1103, 1112 |
| NciI | CCSGG | 1 cut(s) | 1580 |
| NdeI | CATATG | 1 cut(s) | 838 |
| NdeII | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| NlaIV | GGNNCC | 5 cut(s) | 445, 471, 922, 1083, 1144 |
| NmuCI | GTSAC | 3 cut(s) | 206, 299, 716 |
| NsiI | ATGCAT | 1 cut(s) | 1173 |
| NspI | RCATGY | 2 cut(s) | 327, 512 |
| PagI | TCATGA | 1 cut(s) | 1069 |
| PceI | AGGCCT | 1 cut(s) | 83 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 315 |
| PctI | GAATGC | 1 cut(s) | 1801 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1375, 1563 |
| PflFI | GACNNNGTC | 1 cut(s) | 1197 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 995 |
| PkrI | GCNGC | 6 cut(s) | 349, 583, 595, 1009, 1099, 1114 |
| PpuMI | RGGWCCY | 1 cut(s) | 444 |
| PshBI | ATTAAT | 1 cut(s) | 731 |
| Psp124BI | GAGCTC | 1 cut(s) | 504 |
| Psp5II | RGGWCCY | 1 cut(s) | 444 |
| Psp6I | CCWGG | 2 cut(s) | 446, 1294 |
| PspEI | GGTNACC | 1 cut(s) | 1411 |
| PspGI | CCWGG | 2 cut(s) | 446, 1294 |
| PspN4I | GGNNCC | 5 cut(s) | 445, 471, 922, 1083, 1144 |
| PspPI | GGNCC | 3 cut(s) | 102, 444, 805 |
| PspPPI | RGGWCCY | 1 cut(s) | 444 |
| PsuI | RGATCY | 3 cut(s) | 5, 1081, 1714 |
| PsyI | GACNNNGTC | 1 cut(s) | 1197 |
| PvuII | CAGCTG | 2 cut(s) | 40, 1010 |
| RsaI | GTAC | 6 cut(s) | 547, 751, 900, 1465, 1484, 1504 |
| RsaNI | GTAC | 6 cut(s) | 546, 750, 899, 1464, 1483, 1503 |
| RseI | CAYNNNNRTG | 1 cut(s) | 879 |
| SacI | GAGCTC | 1 cut(s) | 504 |
| SaqAI | TTAA | 3 cut(s) | 21, 731, 1253 |
| SatI | GCNGC | 6 cut(s) | 348, 582, 594, 1008, 1098, 1113 |
| Sau3AI | GATC | 7 cut(s) | 5, 229, 553, 721, 844, 1081, 1714 |
| Sau96I | GGNCC | 3 cut(s) | 102, 444, 805 |
| ScaI | AGTACT | 1 cut(s) | 547 |
| ScrFI | CCNGG | 3 cut(s) | 448, 1296, 1580 |
| SduI | GDGCHC | 3 cut(s) | 504, 780, 802 |
| SfaNI | GCATC | 4 cut(s) | 278, 385, 801, 1447 |
| SinI | GGWCC | 3 cut(s) | 102, 444, 805 |
| SmiI | ATTTAAAT | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 879 |
| SmlI | CTYRAG | 3 cut(s) | 77, 597, 1252 |
| SmoI | CTYRAG | 3 cut(s) | 77, 597, 1252 |
| SpeI | ACTAGT | 2 cut(s) | 743, 1505 |
| Sse9I | AATT | 9 cut(s) | 351, 399, 422, 655, 687, 732, 856, 944, 1632 |
| SseBI | AGGCCT | 1 cut(s) | 83 |
| SsiI | CCGC | 3 cut(s) | 173, 467, 1264 |
| SspI | AATATT | 1 cut(s) | 1394 |
| SspMI | CTAG | 6 cut(s) | 282, 294, 390, 624, 744, 1506 |
| SstI | GAGCTC | 1 cut(s) | 504 |
| StuI | AGGCCT | 1 cut(s) | 83 |
| StyD4I | CCNGG | 3 cut(s) | 446, 1294, 1578 |
| StyI | CCWWGG | 1 cut(s) | 1416 |
| SwaI | ATTTAAAT | 1 cut(s) | 22 |
| TaaI | ACNGT | 7 cut(s) | 245, 928, 1024, 1122, 1279, 1331, 1468 |
| TaiI | ACGT | 1 cut(s) | 1504 |
| TaqI | TCGA | 2 cut(s) | 1054, 1557 |
| TasI | AATT | 9 cut(s) | 351, 399, 422, 655, 687, 732, 856, 944, 1632 |
| TatI | WGTACW | 2 cut(s) | 545, 898 |
| Tru1I | TTAA | 3 cut(s) | 21, 731, 1253 |
| Tru9I | TTAA | 3 cut(s) | 21, 731, 1253 |
| TscAI | CASTG | 3 cut(s) | 802, 1336, 1473 |
| TseFI | GTSAC | 3 cut(s) | 206, 299, 716 |
| TseI | GCWGC | 6 cut(s) | 347, 581, 593, 1007, 1097, 1112 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 299, 716 |
| TspDTI | ATGAA | 8 cut(s) | 135, 150, 348, 530, 869, 1086, 1535, 1839 |
| TspRI | CASTG | 3 cut(s) | 802, 1336, 1473 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 995 |
| Vha464I | CTTAAG | 1 cut(s) | 1252 |
| VneI | GTGCAC | 2 cut(s) | 776, 798 |
| VpaK11BI | GGWCC | 3 cut(s) | 102, 444, 805 |
| VspI | ATTAAT | 1 cut(s) | 731 |
| XapI | RAATTY | 3 cut(s) | 422, 687, 944 |
| XceI | RCATGY | 2 cut(s) | 327, 512 |
| XmiI | GTMKAC | 4 cut(s) | 436, 833, 862, 1049 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1375, 1563 |
| XspI | CTAG | 6 cut(s) | 282, 294, 390, 624, 744, 1506 |
| ZrmI | AGTACT | 1 cut(s) | 547 |
| Zsp2I | ATGCAT | 1 cut(s) | 1173 |