Rmu_sc0001803.1_g000009

Malonate--CoA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001803.1
Physical Location & Seq
Reverse (-)
24741 .. 30262
5522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001803.1_g000009.1.cds

Sequence Viewer

Length: 1563 bp
atgagctccaccacccctcctttatttaaagctttcaactactactgcaggtcactcttctcctcttcttcttgttcatcttgttcgcgtttcaaggcctcccgctatctcaccaggatcaaccctttgctctgcttgtcacactctcgccttttctcttccttgcaatctggttcatctatggaggcggtaaaagtagctagtcaaggttctggaactcaggatagggttgctgttagatcagataacaagcgttacagttacaatcaactaatttcttctgcatggagtatatctggcttgttatgttgtggcgacttaaaaacttccaaagcaagtagccatcaatctcctttagcaacaactgatggtgcacgaggacttgggcatcttggaggggctagaataggtattgtggctaagccctccgcggaattcgttgctggtatacttgggacttggcttagtggaggtgttgcagttccacttgctctgagctaccctgaggctgagctcttgcatgtgatgaatgattcagacatctccatgatattgagtactgaagatcatcaacaacttatggaaaaccttgctgctaaatgtgctgctcagttttctcttattccaccagttcccagtagtactacttcacatgcaagtgcaggtggtcattcacaagcgggagaagtagatgcagatagaatttttcacaggaatgggaagcaatcaagtgaggatccagcattaataatatacactagtggtacaacgggtaaacctaaaggagttgttcacactcacaaaagcatcagtgcgcaggtccaaaccttggcagaagcttgggagtattcatctgctgatcagtttttgcattgttccacggttgagtttatgccgaagtttagtgtgaggggtatttggcaaagatggcgtgaagcatatccaaaaaatggaactaaggcagatgagggcataactgtctttactggagtaccgaccatgtatactcgattgatacaagctcatgaagccatggatgcggagctaaaagctgcgtctgcctatgctgcacaacagttgcgtcttatgatgtgtggttcctctgcactccctgttcctgtaatgcagcaatgggaaactatcacagggcatcgtcttcttgaacgatacggcatgacagagtttgtgatggcaatatcaaatcccttcagaggtgaacggaaggcaggcacggttggaaaaccatttcctggtgtggaggtaaagatcgttacagaagatgatagcaaaagtgatatgatggtggtgggtgagctttgcattagaagcccttcattgttcaaggaatattggaaacttcctgaggtaactagagaatcatttacaaatgatgggttcttcaagacaggagatgctgagctatgctctggggctaaacacaaacttgcaccatacaagctaccaacacgactttttgtgtgggattcactgcctcgtaatgctatggggaaggtgaataagaaggagttgaagaaagttctggcttctgatcaacagatttga

Protein Analysis

520

Amino Acids

56.71

Weight (kDa)

8.89

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 653
Acc16I TGCGCA 1 cut(s) 816
Acc36I ACCTGC 3 cut(s) 39, 653, 808
AccB7I CCANNNNNTGG 3 cut(s) 829, 950, 1250
AccI GTMKAC 2 cut(s) 448, 1004
AccII CGCG 2 cut(s) 88, 431
AciI CCGC 6 cut(s) 103, 188, 429, 431, 680, 1040
AclWI GGATC 3 cut(s) 125, 731, 744
AcsI RAATTY 2 cut(s) 434, 702
AcuI CTGAAG 2 cut(s) 582, 1192
AfaI GTAC 4 cut(s) 559, 643, 766, 993
AfiI CCNNNNNNNGG 4 cut(s) 829, 950, 1211, 1250
AgsI TTSAA 6 cut(s) 37, 94, 1163, 1342, 1402, 1531
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 2 cut(s) 113, 1249
Alw21I GWGCWC 3 cut(s) 8, 376, 516
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 3 cut(s) 125, 731, 744
AoxI GGCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 5 cut(s) 593, 605, 1052, 1067, 1126
ApoI RAATTY 2 cut(s) 434, 702
AseI ATTAAT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 1330
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 820
AsuHPI GGTGA 4 cut(s) 103, 1226, 1322, 1525
AvaII GGWCC 1 cut(s) 820
AxyI CCTNAGG 2 cut(s) 504, 1362
BaeGI GKGCMC 1 cut(s) 376
BaeI ACNNNNGTAYC 2 cut(s) 975, 1008
BamHI GGATCC 1 cut(s) 736
BanII GRGCYC 2 cut(s) 8, 516
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 1148
Bbv12I GWGCWC 3 cut(s) 8, 376, 516
BbvI GCAGC 5 cut(s) 580, 592, 1039, 1054, 1138
BccI CCATC 6 cut(s) 351, 362, 921, 1183, 1294, 1385
BceAI ACGGC 1 cut(s) 1186
BciT130I CCWGG 2 cut(s) 115, 1251
BclI TGATCA 2 cut(s) 859, 1549
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 4 cut(s) 201, 402, 759, 1371
BfmI CTRYAG 1 cut(s) 46
BfuAI ACCTGC 3 cut(s) 39, 653, 808
BisI GCNGC 5 cut(s) 594, 606, 1053, 1068, 1127
BlpI GCTNAGC 3 cut(s) 420, 510, 1416
BlsI GCNGC 5 cut(s) 595, 607, 1054, 1069, 1128
BmcAI AGTACT 2 cut(s) 559, 643
Bme1390I CCNGG 2 cut(s) 115, 1251
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 738, 1099
BmrFI CCNGG 2 cut(s) 115, 1251
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 6 cut(s) 397, 682, 816, 1027, 1159, 1402
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 1148
BplI GAGNNNNNCTC 2 cut(s) 1409, 1441
BpmI CTGGAG 1 cut(s) 1008
Bpu1102I GCTNAGC 3 cut(s) 420, 510, 1416
BsaJI CCNNGG 4 cut(s) 429, 828, 879, 1032
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 4 cut(s) 829, 950, 1211, 1250
Bse1I ACTGG 3 cut(s) 629, 636, 991
Bse21I CCTNAGG 2 cut(s) 504, 1362
Bse3DI GCAATG 1 cut(s) 1136
BseBI CCWGG 2 cut(s) 115, 1251
BseDI CCNNGG 4 cut(s) 429, 828, 879, 1032
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 4 cut(s) 829, 950, 1211, 1250
BseMI GCAATG 1 cut(s) 1136
BseMII CTCAG 7 cut(s) 233, 485, 495, 501, 623, 1353, 1407
BseNI ACTGG 3 cut(s) 629, 636, 991
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 5 cut(s) 580, 592, 1039, 1054, 1138
BsgI GTGCAG 3 cut(s) 681, 1053, 1089
Bsh1236I CGCG 2 cut(s) 88, 431
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 3 cut(s) 8, 376, 516
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 4 cut(s) 829, 950, 1211, 1250
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 3 cut(s) 8, 376, 516
Bsp143I GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
Bsp1720I GCTNAGC 3 cut(s) 420, 510, 1416
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 6 cut(s) 103, 188, 429, 431, 680, 1040
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 7 cut(s) 232, 486, 496, 502, 622, 1354, 1408
BspFNI CGCG 2 cut(s) 88, 431
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 2 cut(s) 738, 1099
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 3 cut(s) 39, 653, 808
BspPI GGATC 3 cut(s) 125, 731, 744
BsrDI GCAATG 1 cut(s) 1136
BsrI ACTGG 3 cut(s) 629, 636, 991
BssECI CCNNGG 4 cut(s) 429, 828, 879, 1032
BssMI GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
BssNAI GTATAC 2 cut(s) 449, 1005
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 828, 1032
Bst1107I GTATAC 2 cut(s) 449, 1005
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 115, 1251
Bst4CI ACNGT 5 cut(s) 260, 883, 979, 1077, 1234
Bst6I CTCTTC 3 cut(s) 62, 70, 163
BstC8I GCNNGC 1 cut(s) 1228
BstDSI CCRYGG 3 cut(s) 429, 879, 1032
BstF5I GGATG 1 cut(s) 1042
BstFNI CGCG 2 cut(s) 88, 431
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 7 cut(s) 120, 242, 568, 739, 862, 1269, 1552
BstMBI GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
BstMWI GCNNNNNNNGC 7 cut(s) 602, 928, 1028, 1037, 1058, 1067, 1326
BstNI CCWGG 2 cut(s) 115, 1251
BstNSI RCATGY 2 cut(s) 524, 656
BstSCI CCNGG 2 cut(s) 113, 1249
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 2 cut(s) 88, 431
BstV1I GCAGC 5 cut(s) 580, 592, 1039, 1054, 1138
BstV2I GAAGAC 1 cut(s) 1148
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BstZ17I GTATAC 2 cut(s) 449, 1005
Bsu36I CCTNAGG 2 cut(s) 504, 1362
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 3 cut(s) 429, 879, 1032
BtsCI GGATG 1 cut(s) 1042
BtsI GCAGTG 1 cut(s) 1487
BtsIMutI CAGTG 2 cut(s) 817, 1487
BveI ACCTGC 3 cut(s) 39, 653, 808
Cac8I GCNNGC 1 cut(s) 1228
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 817
Cfr13I GGNCC 1 cut(s) 820
Cfr42I CCGCGG 1 cut(s) 432
CseI GACGC 2 cut(s) 1044, 1070
Csp6I GTAC 4 cut(s) 558, 642, 765, 992
CviAII CATG 8 cut(s) 285, 521, 547, 653, 1000, 1025, 1033, 1174
CviQI GTAC 4 cut(s) 558, 642, 765, 992
DpnI GATC 7 cut(s) 119, 241, 567, 738, 861, 1268, 1551
DpnII GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 3 cut(s) 62, 70, 163
EarI CTCTTC 3 cut(s) 62, 70, 163
Ecl136II GAGCTC 2 cut(s) 6, 514
Eco130I CCWWGG 2 cut(s) 828, 1032
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 8, 516
Eco47I GGWCC 1 cut(s) 820
Eco53kI GAGCTC 2 cut(s) 6, 514
Eco57I CTGAAG 2 cut(s) 582, 1192
Eco81I CCTNAGG 2 cut(s) 504, 1362
EcoICRI GAGCTC 2 cut(s) 6, 514
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 113, 1249
EcoT14I CCWWGG 2 cut(s) 828, 1032
EcoT38I GRGCYC 2 cut(s) 8, 516
ErhI CCWWGG 2 cut(s) 828, 1032
FaeI CATG 8 cut(s) 288, 524, 550, 656, 1003, 1028, 1036, 1177
FaqI GGGAC 1 cut(s) 469
FatI CATG 8 cut(s) 284, 520, 546, 652, 999, 1024, 1032, 1173
FauI CCCGC 2 cut(s) 110, 673
FbaI TGATCA 2 cut(s) 859, 1549
FblI GTMKAC 2 cut(s) 448, 1004
Fnu4HI GCNGC 5 cut(s) 594, 606, 1053, 1068, 1127
FokI GGATG 1 cut(s) 1049
FriOI GRGCYC 2 cut(s) 8, 516
Fsp4HI GCNGC 5 cut(s) 594, 606, 1053, 1068, 1127
FspBI CTAG 4 cut(s) 201, 402, 759, 1371
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 1 cut(s) 816
GluI GCNGC 5 cut(s) 594, 606, 1053, 1068, 1127
GsuI CTGGAG 1 cut(s) 1008
HaeIII GGCC 1 cut(s) 98
HgaI GACGC 2 cut(s) 1044, 1070
HhaI GCGC 1 cut(s) 817
Hin1II CATG 8 cut(s) 288, 524, 550, 656, 1003, 1028, 1036, 1177
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HindIII AAGCTT 2 cut(s) 30, 837
HinfI GANTC 3 cut(s) 533, 1376, 1484
HphI GGTGA 4 cut(s) 103, 1226, 1322, 1525
Hpy166II GTNNAC 6 cut(s) 374, 449, 776, 793, 1005, 1217
Hpy188I TCNGA 5 cut(s) 244, 495, 538, 1211, 1549
Hpy188III TCNNGA 6 cut(s) 213, 221, 1025, 1160, 1361, 1402
Hpy8I GTNNAC 6 cut(s) 374, 449, 776, 793, 1005, 1217
HpyAV CCTTC 5 cut(s) 1216, 1216, 1341, 1504, 1516
HpyCH4III ACNGT 5 cut(s) 260, 883, 979, 1077, 1234
HpyF10VI GCNNNNNNNGC 7 cut(s) 602, 928, 1028, 1037, 1058, 1067, 1326
Hsp92II CATG 8 cut(s) 288, 524, 550, 656, 1003, 1028, 1036, 1177
HspAI GCGC 1 cut(s) 815
Ksp22I TGATCA 2 cut(s) 859, 1549
KspI CCGCGG 1 cut(s) 432
Kzo9I GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
LmnI GCTCC 2 cut(s) 11, 1042
Lsp1109I GCAGC 5 cut(s) 580, 592, 1039, 1054, 1138
LweI GCATC 6 cut(s) 397, 682, 816, 1027, 1159, 1402
MaeI CTAG 4 cut(s) 201, 402, 759, 1371
MaeIII GTNAC 6 cut(s) 51, 138, 254, 260, 1270, 1366
MalI GATC 7 cut(s) 119, 241, 567, 738, 861, 1268, 1551
MboI GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 3 cut(s) 8, 376, 516
MluCI AATT 3 cut(s) 273, 434, 702
MmeI TCCRAC 1 cut(s) 1216
MroXI GAANNNNTTC 1 cut(s) 1330
MseI TTAA 3 cut(s) 27, 320, 746
MslI CAYNNNNRTG 3 cut(s) 545, 657, 714
MspA1I CMGCKG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 115, 1251
MvaI CCWGG 2 cut(s) 115, 1251
MvnI CGCG 2 cut(s) 88, 431
MwoI GCNNNNNNNGC 7 cut(s) 602, 928, 1028, 1037, 1058, 1067, 1326
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
NlaIII CATG 8 cut(s) 288, 524, 550, 656, 1003, 1028, 1036, 1177
NlaIV GGNNCC 2 cut(s) 738, 1099
NmuCI GTSAC 2 cut(s) 51, 138
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 2 cut(s) 524, 656
PagI TCATGA 1 cut(s) 1024
PaqCI CACCTGC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 1330
PfeI GAWTC 3 cut(s) 533, 1376, 1484
PflMI CCANNNNNTGG 3 cut(s) 829, 950, 1250
PkrI GCNGC 5 cut(s) 595, 607, 1054, 1069, 1128
PshBI ATTAAT 1 cut(s) 746
Psp124BI GAGCTC 2 cut(s) 8, 516
Psp6I CCWGG 2 cut(s) 113, 1249
PspGI CCWGG 2 cut(s) 113, 1249
PspN4I GGNNCC 2 cut(s) 738, 1099
PspPI GGNCC 1 cut(s) 820
PstI CTGCAG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 4 cut(s) 559, 643, 766, 993
RsaNI GTAC 4 cut(s) 558, 642, 765, 992
RseI CAYNNNNRTG 3 cut(s) 545, 657, 714
SacI GAGCTC 2 cut(s) 8, 516
SacII CCGCGG 1 cut(s) 432
SaqAI TTAA 3 cut(s) 27, 320, 746
SatI GCNGC 5 cut(s) 594, 606, 1053, 1068, 1127
Sau3AI GATC 7 cut(s) 117, 239, 565, 736, 859, 1266, 1549
Sau96I GGNCC 1 cut(s) 820
ScaI AGTACT 2 cut(s) 559, 643
ScrFI CCNGG 2 cut(s) 115, 1251
SduI GDGCHC 3 cut(s) 8, 376, 516
SfaNI GCATC 6 cut(s) 397, 682, 816, 1027, 1159, 1402
SfcI CTRYAG 1 cut(s) 46
Sfr303I CCGCGG 1 cut(s) 432
SgrBI CCGCGG 1 cut(s) 432
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 3 cut(s) 545, 657, 714
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 3 cut(s) 273, 434, 702
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 6 cut(s) 103, 188, 429, 431, 680, 1040
SspI AATATT 1 cut(s) 1349
SspMI CTAG 4 cut(s) 201, 402, 759, 1371
SstI GAGCTC 2 cut(s) 8, 516
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 113, 1249
StyI CCWWGG 2 cut(s) 828, 1032
TaaI ACNGT 5 cut(s) 260, 883, 979, 1077, 1234
TaqI TCGA 1 cut(s) 1009
TasI AATT 3 cut(s) 273, 434, 702
TatI WGTACW 2 cut(s) 557, 641
TfiI GAWTC 3 cut(s) 533, 1376, 1484
Tru1I TTAA 3 cut(s) 27, 320, 746
Tru9I TTAA 3 cut(s) 27, 320, 746
TscAI CASTG 2 cut(s) 817, 1494
TseFI GTSAC 2 cut(s) 51, 138
TseI GCWGC 5 cut(s) 593, 605, 1052, 1067, 1126
Tsp45I GTSAC 2 cut(s) 51, 138
TspDTI ATGAA 6 cut(s) 66, 165, 542, 840, 1041, 1323
TspGWI ACGGA 1 cut(s) 1234
TspRI CASTG 2 cut(s) 817, 1494
Van91I CCANNNNNTGG 3 cut(s) 829, 950, 1250
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 820
VspI ATTAAT 1 cut(s) 746
XapI RAATTY 2 cut(s) 434, 702
XceI RCATGY 2 cut(s) 524, 656
XmiI GTMKAC 2 cut(s) 448, 1004
XmnI GAANNNNTTC 1 cut(s) 1330
XspI CTAG 4 cut(s) 201, 402, 759, 1371
ZrmI AGTACT 2 cut(s) 559, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.