Malonate--CoA
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16170 |
| fragaria_vesca | FvH4_6g31860 FvH4_6g31860 FvH4_6g31860 |
| malus_domestica | MD09G1208800.v1.1 MD17G1190300.v1.1 |
| prunus_persica | Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1 |
| pyrus_communis | pycom09g12490 pycom17g19780 |
| rosa_chinensis | RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181 |
| rosa_laevigata | RLG00000019793 |
| rosa_multiflora | Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00105570 |
| rosa_rugosa | Rorug02G0355400 |
| rosa_samantha | Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300 |
| rosa_wichuraiana | Rw2G033120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 653 |
| Acc16I | TGCGCA | 1 cut(s) | 816 |
| Acc36I | ACCTGC | 3 cut(s) | 39, 653, 808 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 829, 950, 1250 |
| AccI | GTMKAC | 2 cut(s) | 448, 1004 |
| AccII | CGCG | 2 cut(s) | 88, 431 |
| AciI | CCGC | 6 cut(s) | 103, 188, 429, 431, 680, 1040 |
| AclWI | GGATC | 3 cut(s) | 125, 731, 744 |
| AcsI | RAATTY | 2 cut(s) | 434, 702 |
| AcuI | CTGAAG | 2 cut(s) | 582, 1192 |
| AfaI | GTAC | 4 cut(s) | 559, 643, 766, 993 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 829, 950, 1211, 1250 |
| AgsI | TTSAA | 6 cut(s) | 37, 94, 1163, 1342, 1402, 1531 |
| AhlI | ACTAGT | 1 cut(s) | 758 |
| AjnI | CCWGG | 2 cut(s) | 113, 1249 |
| Alw21I | GWGCWC | 3 cut(s) | 8, 376, 516 |
| Alw44I | GTGCAC | 1 cut(s) | 372 |
| AlwI | GGATC | 3 cut(s) | 125, 731, 744 |
| AoxI | GGCC | 1 cut(s) | 96 |
| ApaLI | GTGCAC | 1 cut(s) | 372 |
| ApeKI | GCWGC | 5 cut(s) | 593, 605, 1052, 1067, 1126 |
| ApoI | RAATTY | 2 cut(s) | 434, 702 |
| AseI | ATTAAT | 1 cut(s) | 746 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1330 |
| AspLEI | GCGC | 1 cut(s) | 817 |
| AspS9I | GGNCC | 1 cut(s) | 820 |
| AsuHPI | GGTGA | 4 cut(s) | 103, 1226, 1322, 1525 |
| AvaII | GGWCC | 1 cut(s) | 820 |
| AxyI | CCTNAGG | 2 cut(s) | 504, 1362 |
| BaeGI | GKGCMC | 1 cut(s) | 376 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 975, 1008 |
| BamHI | GGATCC | 1 cut(s) | 736 |
| BanII | GRGCYC | 2 cut(s) | 8, 516 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 631, 663 |
| BauI | CACGAG | 1 cut(s) | 375 |
| BbsI | GAAGAC | 1 cut(s) | 1148 |
| Bbv12I | GWGCWC | 3 cut(s) | 8, 376, 516 |
| BbvI | GCAGC | 5 cut(s) | 580, 592, 1039, 1054, 1138 |
| BccI | CCATC | 6 cut(s) | 351, 362, 921, 1183, 1294, 1385 |
| BceAI | ACGGC | 1 cut(s) | 1186 |
| BciT130I | CCWGG | 2 cut(s) | 115, 1251 |
| BclI | TGATCA | 2 cut(s) | 859, 1549 |
| BcuI | ACTAGT | 1 cut(s) | 758 |
| BfaI | CTAG | 4 cut(s) | 201, 402, 759, 1371 |
| BfmI | CTRYAG | 1 cut(s) | 46 |
| BfuAI | ACCTGC | 3 cut(s) | 39, 653, 808 |
| BisI | GCNGC | 5 cut(s) | 594, 606, 1053, 1068, 1127 |
| BlpI | GCTNAGC | 3 cut(s) | 420, 510, 1416 |
| BlsI | GCNGC | 5 cut(s) | 595, 607, 1054, 1069, 1128 |
| BmcAI | AGTACT | 2 cut(s) | 559, 643 |
| Bme1390I | CCNGG | 2 cut(s) | 115, 1251 |
| Bme18I | GGWCC | 1 cut(s) | 820 |
| BmgT120I | GGNCC | 1 cut(s) | 820 |
| BmiI | GGNNCC | 2 cut(s) | 738, 1099 |
| BmrFI | CCNGG | 2 cut(s) | 115, 1251 |
| BmrI | ACTGGG | 1 cut(s) | 630 |
| BmsI | GCATC | 6 cut(s) | 397, 682, 816, 1027, 1159, 1402 |
| BmuI | ACTGGG | 1 cut(s) | 630 |
| BpiI | GAAGAC | 1 cut(s) | 1148 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1409, 1441 |
| BpmI | CTGGAG | 1 cut(s) | 1008 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 420, 510, 1416 |
| BsaJI | CCNNGG | 4 cut(s) | 429, 828, 879, 1032 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 31 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 829, 950, 1211, 1250 |
| Bse1I | ACTGG | 3 cut(s) | 629, 636, 991 |
| Bse21I | CCTNAGG | 2 cut(s) | 504, 1362 |
| Bse3DI | GCAATG | 1 cut(s) | 1136 |
| BseBI | CCWGG | 2 cut(s) | 115, 1251 |
| BseDI | CCNNGG | 4 cut(s) | 429, 828, 879, 1032 |
| BseGI | GGATG | 1 cut(s) | 1042 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 829, 950, 1211, 1250 |
| BseMI | GCAATG | 1 cut(s) | 1136 |
| BseMII | CTCAG | 7 cut(s) | 233, 485, 495, 501, 623, 1353, 1407 |
| BseNI | ACTGG | 3 cut(s) | 629, 636, 991 |
| BseRI | GAGGAG | 1 cut(s) | 52 |
| BseSI | GKGCMC | 1 cut(s) | 376 |
| BseXI | GCAGC | 5 cut(s) | 580, 592, 1039, 1054, 1138 |
| BsgI | GTGCAG | 3 cut(s) | 681, 1053, 1089 |
| Bsh1236I | CGCG | 2 cut(s) | 88, 431 |
| BshFI | GGCC | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 3 cut(s) | 8, 376, 516 |
| BslFI | GGGAC | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 829, 950, 1211, 1250 |
| BsmFI | GGGAC | 1 cut(s) | 469 |
| BsnI | GGCC | 1 cut(s) | 98 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 376, 516 |
| Bsp143I | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 420, 510, 1416 |
| Bsp19I | CCATGG | 1 cut(s) | 1032 |
| BspACI | CCGC | 6 cut(s) | 103, 188, 429, 431, 680, 1040 |
| BspANI | GGCC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 7 cut(s) | 232, 486, 496, 502, 622, 1354, 1408 |
| BspFNI | CGCG | 2 cut(s) | 88, 431 |
| BspHI | TCATGA | 1 cut(s) | 1024 |
| BspLI | GGNNCC | 2 cut(s) | 738, 1099 |
| BspMAI | CTGCAG | 1 cut(s) | 50 |
| BspMI | ACCTGC | 3 cut(s) | 39, 653, 808 |
| BspPI | GGATC | 3 cut(s) | 125, 731, 744 |
| BsrDI | GCAATG | 1 cut(s) | 1136 |
| BsrI | ACTGG | 3 cut(s) | 629, 636, 991 |
| BssECI | CCNNGG | 4 cut(s) | 429, 828, 879, 1032 |
| BssMI | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| BssNAI | GTATAC | 2 cut(s) | 449, 1005 |
| BssSI | CACGAG | 1 cut(s) | 375 |
| BssT1I | CCWWGG | 2 cut(s) | 828, 1032 |
| Bst1107I | GTATAC | 2 cut(s) | 449, 1005 |
| Bst2BI | CACGAG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 2 cut(s) | 115, 1251 |
| Bst4CI | ACNGT | 5 cut(s) | 260, 883, 979, 1077, 1234 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 70, 163 |
| BstC8I | GCNNGC | 1 cut(s) | 1228 |
| BstDSI | CCRYGG | 3 cut(s) | 429, 879, 1032 |
| BstF5I | GGATG | 1 cut(s) | 1042 |
| BstFNI | CGCG | 2 cut(s) | 88, 431 |
| BstHHI | GCGC | 1 cut(s) | 817 |
| BstKTI | GATC | 7 cut(s) | 120, 242, 568, 739, 862, 1269, 1552 |
| BstMBI | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 602, 928, 1028, 1037, 1058, 1067, 1326 |
| BstNI | CCWGG | 2 cut(s) | 115, 1251 |
| BstNSI | RCATGY | 2 cut(s) | 524, 656 |
| BstSCI | CCNGG | 2 cut(s) | 113, 1249 |
| BstSFI | CTRYAG | 1 cut(s) | 46 |
| BstSLI | GKGCMC | 1 cut(s) | 376 |
| BstUI | CGCG | 2 cut(s) | 88, 431 |
| BstV1I | GCAGC | 5 cut(s) | 580, 592, 1039, 1054, 1138 |
| BstV2I | GAAGAC | 1 cut(s) | 1148 |
| BstX2I | RGATCY | 1 cut(s) | 736 |
| BstYI | RGATCY | 1 cut(s) | 736 |
| BstZ17I | GTATAC | 2 cut(s) | 449, 1005 |
| Bsu36I | CCTNAGG | 2 cut(s) | 504, 1362 |
| BsuRI | GGCC | 1 cut(s) | 98 |
| BtgI | CCRYGG | 3 cut(s) | 429, 879, 1032 |
| BtsCI | GGATG | 1 cut(s) | 1042 |
| BtsI | GCAGTG | 1 cut(s) | 1487 |
| BtsIMutI | CAGTG | 2 cut(s) | 817, 1487 |
| BveI | ACCTGC | 3 cut(s) | 39, 653, 808 |
| Cac8I | GCNNGC | 1 cut(s) | 1228 |
| CciI | TCATGA | 1 cut(s) | 1024 |
| CfoI | GCGC | 1 cut(s) | 817 |
| Cfr13I | GGNCC | 1 cut(s) | 820 |
| Cfr42I | CCGCGG | 1 cut(s) | 432 |
| CseI | GACGC | 2 cut(s) | 1044, 1070 |
| Csp6I | GTAC | 4 cut(s) | 558, 642, 765, 992 |
| CviAII | CATG | 8 cut(s) | 285, 521, 547, 653, 1000, 1025, 1033, 1174 |
| CviQI | GTAC | 4 cut(s) | 558, 642, 765, 992 |
| DpnI | GATC | 7 cut(s) | 119, 241, 567, 738, 861, 1268, 1551 |
| DpnII | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| DraI | TTTAAA | 1 cut(s) | 28 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 70, 163 |
| EarI | CTCTTC | 3 cut(s) | 62, 70, 163 |
| Ecl136II | GAGCTC | 2 cut(s) | 6, 514 |
| Eco130I | CCWWGG | 2 cut(s) | 828, 1032 |
| Eco147I | AGGCCT | 1 cut(s) | 98 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 516 |
| Eco47I | GGWCC | 1 cut(s) | 820 |
| Eco53kI | GAGCTC | 2 cut(s) | 6, 514 |
| Eco57I | CTGAAG | 2 cut(s) | 582, 1192 |
| Eco81I | CCTNAGG | 2 cut(s) | 504, 1362 |
| EcoICRI | GAGCTC | 2 cut(s) | 6, 514 |
| EcoRI | GAATTC | 1 cut(s) | 434 |
| EcoRII | CCWGG | 2 cut(s) | 113, 1249 |
| EcoT14I | CCWWGG | 2 cut(s) | 828, 1032 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 516 |
| ErhI | CCWWGG | 2 cut(s) | 828, 1032 |
| FaeI | CATG | 8 cut(s) | 288, 524, 550, 656, 1003, 1028, 1036, 1177 |
| FaqI | GGGAC | 1 cut(s) | 469 |
| FatI | CATG | 8 cut(s) | 284, 520, 546, 652, 999, 1024, 1032, 1173 |
| FauI | CCCGC | 2 cut(s) | 110, 673 |
| FbaI | TGATCA | 2 cut(s) | 859, 1549 |
| FblI | GTMKAC | 2 cut(s) | 448, 1004 |
| Fnu4HI | GCNGC | 5 cut(s) | 594, 606, 1053, 1068, 1127 |
| FokI | GGATG | 1 cut(s) | 1049 |
| FriOI | GRGCYC | 2 cut(s) | 8, 516 |
| Fsp4HI | GCNGC | 5 cut(s) | 594, 606, 1053, 1068, 1127 |
| FspBI | CTAG | 4 cut(s) | 201, 402, 759, 1371 |
| FspI | TGCGCA | 1 cut(s) | 816 |
| GlaI | GCGC | 1 cut(s) | 816 |
| GluI | GCNGC | 5 cut(s) | 594, 606, 1053, 1068, 1127 |
| GsuI | CTGGAG | 1 cut(s) | 1008 |
| HaeIII | GGCC | 1 cut(s) | 98 |
| HgaI | GACGC | 2 cut(s) | 1044, 1070 |
| HhaI | GCGC | 1 cut(s) | 817 |
| Hin1II | CATG | 8 cut(s) | 288, 524, 550, 656, 1003, 1028, 1036, 1177 |
| Hin6I | GCGC | 1 cut(s) | 815 |
| HinP1I | GCGC | 1 cut(s) | 815 |
| HindIII | AAGCTT | 2 cut(s) | 30, 837 |
| HinfI | GANTC | 3 cut(s) | 533, 1376, 1484 |
| HphI | GGTGA | 4 cut(s) | 103, 1226, 1322, 1525 |
| Hpy166II | GTNNAC | 6 cut(s) | 374, 449, 776, 793, 1005, 1217 |
| Hpy188I | TCNGA | 5 cut(s) | 244, 495, 538, 1211, 1549 |
| Hpy188III | TCNNGA | 6 cut(s) | 213, 221, 1025, 1160, 1361, 1402 |
| Hpy8I | GTNNAC | 6 cut(s) | 374, 449, 776, 793, 1005, 1217 |
| HpyAV | CCTTC | 5 cut(s) | 1216, 1216, 1341, 1504, 1516 |
| HpyCH4III | ACNGT | 5 cut(s) | 260, 883, 979, 1077, 1234 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 602, 928, 1028, 1037, 1058, 1067, 1326 |
| Hsp92II | CATG | 8 cut(s) | 288, 524, 550, 656, 1003, 1028, 1036, 1177 |
| HspAI | GCGC | 1 cut(s) | 815 |
| Ksp22I | TGATCA | 2 cut(s) | 859, 1549 |
| KspI | CCGCGG | 1 cut(s) | 432 |
| Kzo9I | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| LmnI | GCTCC | 2 cut(s) | 11, 1042 |
| Lsp1109I | GCAGC | 5 cut(s) | 580, 592, 1039, 1054, 1138 |
| LweI | GCATC | 6 cut(s) | 397, 682, 816, 1027, 1159, 1402 |
| MaeI | CTAG | 4 cut(s) | 201, 402, 759, 1371 |
| MaeIII | GTNAC | 6 cut(s) | 51, 138, 254, 260, 1270, 1366 |
| MalI | GATC | 7 cut(s) | 119, 241, 567, 738, 861, 1268, 1551 |
| MboI | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| MflI | RGATCY | 1 cut(s) | 736 |
| MhlI | GDGCHC | 3 cut(s) | 8, 376, 516 |
| MluCI | AATT | 3 cut(s) | 273, 434, 702 |
| MmeI | TCCRAC | 1 cut(s) | 1216 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1330 |
| MseI | TTAA | 3 cut(s) | 27, 320, 746 |
| MslI | CAYNNNNRTG | 3 cut(s) | 545, 657, 714 |
| MspA1I | CMGCKG | 1 cut(s) | 431 |
| MspR9I | CCNGG | 2 cut(s) | 115, 1251 |
| MvaI | CCWGG | 2 cut(s) | 115, 1251 |
| MvnI | CGCG | 2 cut(s) | 88, 431 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 602, 928, 1028, 1037, 1058, 1067, 1326 |
| NcoI | CCATGG | 1 cut(s) | 1032 |
| NdeII | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| NlaIII | CATG | 8 cut(s) | 288, 524, 550, 656, 1003, 1028, 1036, 1177 |
| NlaIV | GGNNCC | 2 cut(s) | 738, 1099 |
| NmuCI | GTSAC | 2 cut(s) | 51, 138 |
| NsbI | TGCGCA | 1 cut(s) | 816 |
| NspI | RCATGY | 2 cut(s) | 524, 656 |
| PagI | TCATGA | 1 cut(s) | 1024 |
| PaqCI | CACCTGC | 1 cut(s) | 653 |
| PceI | AGGCCT | 1 cut(s) | 98 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1330 |
| PfeI | GAWTC | 3 cut(s) | 533, 1376, 1484 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 829, 950, 1250 |
| PkrI | GCNGC | 5 cut(s) | 595, 607, 1054, 1069, 1128 |
| PshBI | ATTAAT | 1 cut(s) | 746 |
| Psp124BI | GAGCTC | 2 cut(s) | 8, 516 |
| Psp6I | CCWGG | 2 cut(s) | 113, 1249 |
| PspGI | CCWGG | 2 cut(s) | 113, 1249 |
| PspN4I | GGNNCC | 2 cut(s) | 738, 1099 |
| PspPI | GGNCC | 1 cut(s) | 820 |
| PstI | CTGCAG | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 736 |
| RsaI | GTAC | 4 cut(s) | 559, 643, 766, 993 |
| RsaNI | GTAC | 4 cut(s) | 558, 642, 765, 992 |
| RseI | CAYNNNNRTG | 3 cut(s) | 545, 657, 714 |
| SacI | GAGCTC | 2 cut(s) | 8, 516 |
| SacII | CCGCGG | 1 cut(s) | 432 |
| SaqAI | TTAA | 3 cut(s) | 27, 320, 746 |
| SatI | GCNGC | 5 cut(s) | 594, 606, 1053, 1068, 1127 |
| Sau3AI | GATC | 7 cut(s) | 117, 239, 565, 736, 859, 1266, 1549 |
| Sau96I | GGNCC | 1 cut(s) | 820 |
| ScaI | AGTACT | 2 cut(s) | 559, 643 |
| ScrFI | CCNGG | 2 cut(s) | 115, 1251 |
| SduI | GDGCHC | 3 cut(s) | 8, 376, 516 |
| SfaNI | GCATC | 6 cut(s) | 397, 682, 816, 1027, 1159, 1402 |
| SfcI | CTRYAG | 1 cut(s) | 46 |
| Sfr303I | CCGCGG | 1 cut(s) | 432 |
| SgrBI | CCGCGG | 1 cut(s) | 432 |
| SinI | GGWCC | 1 cut(s) | 820 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 545, 657, 714 |
| SpeI | ACTAGT | 1 cut(s) | 758 |
| Sse9I | AATT | 3 cut(s) | 273, 434, 702 |
| SseBI | AGGCCT | 1 cut(s) | 98 |
| SsiI | CCGC | 6 cut(s) | 103, 188, 429, 431, 680, 1040 |
| SspI | AATATT | 1 cut(s) | 1349 |
| SspMI | CTAG | 4 cut(s) | 201, 402, 759, 1371 |
| SstI | GAGCTC | 2 cut(s) | 8, 516 |
| StuI | AGGCCT | 1 cut(s) | 98 |
| StyD4I | CCNGG | 2 cut(s) | 113, 1249 |
| StyI | CCWWGG | 2 cut(s) | 828, 1032 |
| TaaI | ACNGT | 5 cut(s) | 260, 883, 979, 1077, 1234 |
| TaqI | TCGA | 1 cut(s) | 1009 |
| TasI | AATT | 3 cut(s) | 273, 434, 702 |
| TatI | WGTACW | 2 cut(s) | 557, 641 |
| TfiI | GAWTC | 3 cut(s) | 533, 1376, 1484 |
| Tru1I | TTAA | 3 cut(s) | 27, 320, 746 |
| Tru9I | TTAA | 3 cut(s) | 27, 320, 746 |
| TscAI | CASTG | 2 cut(s) | 817, 1494 |
| TseFI | GTSAC | 2 cut(s) | 51, 138 |
| TseI | GCWGC | 5 cut(s) | 593, 605, 1052, 1067, 1126 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 138 |
| TspDTI | ATGAA | 6 cut(s) | 66, 165, 542, 840, 1041, 1323 |
| TspGWI | ACGGA | 1 cut(s) | 1234 |
| TspRI | CASTG | 2 cut(s) | 817, 1494 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 829, 950, 1250 |
| VneI | GTGCAC | 1 cut(s) | 372 |
| VpaK11BI | GGWCC | 1 cut(s) | 820 |
| VspI | ATTAAT | 1 cut(s) | 746 |
| XapI | RAATTY | 2 cut(s) | 434, 702 |
| XceI | RCATGY | 2 cut(s) | 524, 656 |
| XmiI | GTMKAC | 2 cut(s) | 448, 1004 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1330 |
| XspI | CTAG | 4 cut(s) | 201, 402, 759, 1371 |
| ZrmI | AGTACT | 2 cut(s) | 559, 643 |