Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Forward (+)

53412784 .. 53415674

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGCTCCACCACCCCTCCTTTATTTAAAGCTTTCAACTACTACTGCAGGTCACTCTTCTCCTCTTCTTATTCATCTTGTTCGCGTTTCAAGGCCTCCCGCTATCTCACCAGGATCAACCCTTTTCTCTGCTTGTCACACTCTCGCCTTTTCTCTTCCTTGCAATCTGGTTCATCTATGGAGGCGGTAAAAGTAGCTAGTCAAGGTTCTGGAACTCAGGATAGTGTTGCTGTTAGATCAGATAACAAGAGTTACAGTTACAATCAAGTAATTTCTTCTGCACGGAGTATATCTGGCTTGTTATGTTGTGGCGACTTAAAAACTTCCAAAGCAAGTAGCCATCAATCTCCTTTAGCAACAACTGATGGTGCTCGAGGACTTGGGCATCTTGGAGGGGCTAGAATAGGTATTGTGGCTAAGCCCTCCGCGGAATTCGTTGCTGGTATACTTGGGACTTGGCTTAGTGGAGGTGTTGCAGTTCCACTTGCTCTGAGCTACCCTGAGGCTGAGCTCTTGCATGTGATGAATGATTCAGACATCTCCATGATATTGAGTACTGAAGATCATCAACAACTTATGGAAAACCTTGCTGCTAAATGTGCTGCTCAGTTTTCTCTTATTCCACCAGTTCCCAGTAGTACTACTTCACATGCAAGTGCAGGTGGTCATTTACAAGCAGGAGAAGTAGATGCAGATAGAATTTTTCACAGGAATGGGAAGCAATCAAGTGAGGATCCAGCATTAATAATATACACTAGTGGTACAACGGGTAAACCTAAAGGAGTTGTTCACACTCACAAAAGCATCAGTGCGCAGGTCCAAACCTTGGCAGAAGCTTGGGAGTATTCATCTGCTGATCAGTTTTTGCATTGTCTACCACTACATCATATCCATTCAATTTTGTATACTTGTGTGCAAATACTGTTTTTGAATACAATTGGAGCTTCCATTTTGCTTTCTGTCTTCAATGTCTCCTTTCCTCTGAGAAACTTGATTGATCCTGAGAATAATCCTTGTTGGGCTTATGGCTTAGTTGATGATTTGATGGTTTGCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

353

Amino Acids

37.85

Weight (kDa)

6.69

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	126 - 306	3.5e-37	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
Acc16I	TGCGCA	1 cut(s)	813
Acc36I	ACCTGC	3 cut(s)	39, 650, 805
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccI	GTMKAC	3 cut(s)	445, 874, 905
AccII	CGCG	2 cut(s)	85, 428
AciI	CCGC	4 cut(s)	100, 185, 426, 428
AclWI	GGATC	4 cut(s)	122, 728, 741, 992
AcsI	RAATTY	2 cut(s)	431, 699
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	556, 640, 763
AfiI	CCNNNNNNNGG	1 cut(s)	826
AgsI	TTSAA	5 cut(s)	37, 91, 897, 931, 967
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	7 cut(s)	6, 32, 197, 495, 511, 836, 944
AluI	AGCT	7 cut(s)	6, 32, 197, 495, 511, 836, 944
Alw21I	GWGCWC	3 cut(s)	8, 373, 513
Alw26I	GTCTC	1 cut(s)	976
AlwI	GGATC	4 cut(s)	122, 728, 741, 992
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	590, 602
ApoI	RAATTY	2 cut(s)	431, 699
AseI	ATTAAT	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	817
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	817
AxyI	CCTNAGG	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	2 cut(s)	8, 513
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	3 cut(s)	8, 373, 513
BbvI	GCAGC	2 cut(s)	577, 589
BccI	CCATC	3 cut(s)	348, 359, 1039
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	976
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	3 cut(s)	198, 399, 756
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	3 cut(s)	39, 650, 805
BisI	GCNGC	2 cut(s)	591, 603
BlpI	GCTNAGC	2 cut(s)	417, 507
BlsI	GCNGC	2 cut(s)	592, 604
BmcAI	AGTACT	2 cut(s)	556, 640
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	3 cut(s)	394, 679, 813
BmuI	ACTGGG	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	955
Bpu1102I	GCTNAGC	2 cut(s)	417, 507
BsaJI	CCNNGG	2 cut(s)	426, 825
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	826
Bse1I	ACTGG	2 cut(s)	626, 633
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	426, 825
BseLI	CCNNNNNNNGG	1 cut(s)	826
BseMII	CTCAG	7 cut(s)	230, 482, 492, 498, 620, 974, 993
BseNI	ACTGG	2 cut(s)	626, 633
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	577, 589
BsgI	GTGCAG	2 cut(s)	264, 678
Bsh1236I	CGCG	2 cut(s)	85, 428
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	3 cut(s)	8, 373, 513
BsiHKCI	CYCGRG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	826
BsmAI	GTCTC	1 cut(s)	976
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	8, 373, 513
Bsp143I	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
Bsp1720I	GCTNAGC	2 cut(s)	417, 507
BspACI	CCGC	4 cut(s)	100, 185, 426, 428
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	7 cut(s)	229, 483, 493, 499, 619, 975, 994
BspFNI	CGCG	2 cut(s)	85, 428
BspLI	GGNNCC	1 cut(s)	735
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	3 cut(s)	39, 650, 805
BspPI	GGATC	4 cut(s)	122, 728, 741, 992
BsrI	ACTGG	2 cut(s)	626, 633
BssECI	CCNNGG	2 cut(s)	426, 825
BssMI	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
BssNAI	GTATAC	2 cut(s)	446, 906
BssT1I	CCWWGG	1 cut(s)	825
Bst1107I	GTATAC	2 cut(s)	446, 906
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	257, 924
Bst6I	CTCTTC	3 cut(s)	62, 70, 160
BstDSI	CCRYGG	1 cut(s)	426
BstFNI	CGCG	2 cut(s)	85, 428
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	6 cut(s)	117, 239, 565, 736, 859, 1000
BstMAI	GTCTC	1 cut(s)	976
BstMBI	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	521, 653
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	2 cut(s)	85, 428
BstV1I	GCAGC	2 cut(s)	577, 589
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BstZ17I	GTATAC	2 cut(s)	446, 906
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	814
BveI	ACCTGC	3 cut(s)	39, 650, 805
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	817
Cfr42I	CCGCGG	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	555, 639, 762
CviAII	CATG	3 cut(s)	518, 544, 650
CviQI	GTAC	3 cut(s)	555, 639, 762
DpnI	GATC	6 cut(s)	116, 238, 564, 735, 858, 999
DpnII	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
DraI	TTTAAA	1 cut(s)	28
Eam1104I	CTCTTC	3 cut(s)	62, 70, 160
EarI	CTCTTC	3 cut(s)	62, 70, 160
Ecl136II	GAGCTC	2 cut(s)	6, 511
Eco130I	CCWWGG	1 cut(s)	825
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	8, 513
Eco47I	GGWCC	1 cut(s)	817
Eco53kI	GAGCTC	2 cut(s)	6, 511
Eco57I	CTGAAG	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	372
EcoICRI	GAGCTC	2 cut(s)	6, 511
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	825
EcoT38I	GRGCYC	2 cut(s)	8, 513
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	3 cut(s)	521, 547, 653
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	517, 543, 649
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	3 cut(s)	445, 874, 905
Fnu4HI	GCNGC	2 cut(s)	591, 603
FriOI	GRGCYC	2 cut(s)	8, 513
Fsp4HI	GCNGC	2 cut(s)	591, 603
FspBI	CTAG	3 cut(s)	198, 399, 756
FspI	TGCGCA	1 cut(s)	813
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	2 cut(s)	591, 603
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	3 cut(s)	521, 547, 653
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HindIII	AAGCTT	2 cut(s)	30, 834
HinfI	GANTC	1 cut(s)	530
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	5 cut(s)	446, 773, 790, 875, 906
Hpy188I	TCNGA	4 cut(s)	241, 492, 535, 984
Hpy188III	TCNNGA	3 cut(s)	210, 218, 1001
Hpy8I	GTNNAC	5 cut(s)	446, 773, 790, 875, 906
HpyCH4III	ACNGT	2 cut(s)	257, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	521, 547, 653
HspAI	GCGC	1 cut(s)	812
Ksp22I	TGATCA	1 cut(s)	856
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
LmnI	GCTCC	2 cut(s)	11, 941
Lsp1109I	GCAGC	2 cut(s)	577, 589
LweI	GCATC	3 cut(s)	394, 679, 813
MaeI	CTAG	3 cut(s)	198, 399, 756
MaeIII	GTNAC	4 cut(s)	51, 135, 251, 257
MalI	GATC	6 cut(s)	116, 238, 564, 735, 858, 999
MboI	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
MboII	GAAGA	6 cut(s)	49, 57, 147, 267, 572, 955
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	3 cut(s)	8, 373, 513
MluCI	AATT	5 cut(s)	270, 431, 699, 897, 936
MseI	TTAA	3 cut(s)	27, 317, 743
MslI	CAYNNNNRTG	3 cut(s)	542, 654, 711
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	85, 428
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
NlaIII	CATG	3 cut(s)	521, 547, 653
NlaIV	GGNNCC	1 cut(s)	735
NmuCI	GTSAC	2 cut(s)	51, 135
NsbI	TGCGCA	1 cut(s)	813
NspI	RCATGY	2 cut(s)	521, 653
PaeR7I	CTCGAG	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	2 cut(s)	592, 604
PshBI	ATTAAT	1 cut(s)	743
Psp124BI	GAGCTC	2 cut(s)	8, 513
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	817
PspXI	VCTCGAGB	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	3 cut(s)	556, 640, 763
RsaNI	GTAC	3 cut(s)	555, 639, 762
RseI	CAYNNNNRTG	3 cut(s)	542, 654, 711
SacI	GAGCTC	2 cut(s)	8, 513
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	27, 317, 743
SatI	GCNGC	2 cut(s)	591, 603
Sau3AI	GATC	6 cut(s)	114, 236, 562, 733, 856, 997
Sau96I	GGNCC	1 cut(s)	817
ScaI	AGTACT	2 cut(s)	556, 640
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	3 cut(s)	8, 373, 513
SfaNI	GCATC	3 cut(s)	394, 679, 813
SfcI	CTRYAG	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	372
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	3 cut(s)	542, 654, 711
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	755
Sse9I	AATT	5 cut(s)	270, 431, 699, 897, 936
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	100, 185, 426, 428
SspMI	CTAG	3 cut(s)	198, 399, 756
SstI	GAGCTC	2 cut(s)	8, 513
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	257, 924
TaqI	TCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	270, 431, 699, 897, 936
TatI	WGTACW	2 cut(s)	554, 638
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	27, 317, 743
Tru9I	TTAA	3 cut(s)	27, 317, 743
TscAI	CASTG	1 cut(s)	814
TseFI	GTSAC	2 cut(s)	51, 135
TseI	GCWGC	2 cut(s)	590, 602
Tsp45I	GTSAC	2 cut(s)	51, 135
TspDTI	ATGAA	4 cut(s)	63, 162, 539, 837
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	814
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	817
VspI	ATTAAT	1 cut(s)	743
XapI	RAATTY	2 cut(s)	431, 699
XceI	RCATGY	2 cut(s)	521, 653
XhoI	CTCGAG	1 cut(s)	372
XmiI	GTMKAC	3 cut(s)	445, 874, 905
XspI	CTAG	3 cut(s)	198, 399, 756
ZrmI	AGTACT	2 cut(s)	556, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.