Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037230.1

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3556

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1081 bp

ggatccagcattaataatatacactagtggtacaacgggtaaacctaaaggagttgttcacactcacaaaagcatcagtgcacaggtccaaaccttggcagaagcttgggagtattcatctgctgatcagtttttgcattgttccacggttgagtttatgccgaagtttagtgtgaggggtatttggcaaagatggcgtgaagcatatccaaaaaatggaactaaggcagatgagggcataactgtctttactggagtaccgaccatgtatactcgattgatacaagctcatgaagccatggatgcggagctaaaagctgcgtctgcctatgctgcacaacagttgcgtcttatgatgtgtggttcctctgcactccctgttcctgtaatgcagcaatgggaaactatcacagggcatcgtcttcttgaacgatacggcatgacagagtttgtgatggcaatatcaaatcccttcagaggtgaacggaaggcaggcacggttggaaaaccatttcctggtgtggaggtaaagatcgttacagaagatgatagcaaaagtgatatgatggtggtgggtgagctttgcattagaagcccttcattgttcaaggaatattggaaacttcctgaggtaactagagaatcatttacaaatgatgggttcttcaagacaggagatgctggtacagtggataaagatggctactacatcatattgggacgtacaagtgctgatataatgaaggttggtggatacaagttatcagcgttagaaattgaatcaattcttttagagcacccatctgtagaggagtgttgtgtattgggcttacctgacaaagattatggagaaattgtctgtgcaatagtagtgccagatgtggaagcaaagaggaaacaagaggaagaaaagagacctgccataagcttggaagagctatgctctggggctaaacacaaacttgcaccatacaagctaccaacacgactttttgtgtgggattcactgcctcgtaatgctatggggaaggtgaataagaaggagttgaagaaagttctggcttctgatcaacagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

359

Amino Acids

40.0

Weight (kDa)

6.46

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	926
AccB7I	CCANNNNNTGG	3 cut(s)	95, 216, 516
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	4 cut(s)	32, 259, 686, 725
AfiI	CCNNNNNNNGG	4 cut(s)	95, 216, 477, 516
AgsI	TTSAA	5 cut(s)	429, 608, 668, 780, 1049
AhlI	ACTAGT	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	8 cut(s)	105, 288, 311, 318, 581, 928, 938, 977
AluI	AGCT	8 cut(s)	105, 288, 311, 318, 581, 928, 938, 977
Alw21I	GWGCWC	2 cut(s)	83, 799
Alw26I	GTCTC	1 cut(s)	908
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	10
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	318, 333, 392
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	2 cut(s)	596, 784
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	492, 588, 1043
AvaII	GGWCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	83
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BamHI	GGATCC	1 cut(s)	2
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	83, 799
BbvI	GCAGC	3 cut(s)	305, 320, 404
BccI	CCATC	6 cut(s)	187, 449, 560, 651, 693, 809
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	747
BclI	TGATCA	2 cut(s)	125, 1067
BcoDI	GTCTC	1 cut(s)	908
BcuI	ACTAGT	1 cut(s)	24
BfaI	CTAG	2 cut(s)	25, 637
BfmI	CTRYAG	1 cut(s)	805
BfuAI	ACCTGC	1 cut(s)	926
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	3 cut(s)	319, 334, 393
BlsI	GCNGC	3 cut(s)	320, 335, 394
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	4, 365
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	4 cut(s)	82, 293, 425, 668
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	927, 959
BpmI	CTGGAG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	3 cut(s)	94, 145, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 216, 477, 516
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	3 cut(s)	94, 145, 298
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	4 cut(s)	95, 216, 477, 516
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	305, 320, 404
BsgI	GTGCAG	2 cut(s)	319, 355
BsiHKAI	GWGCWC	2 cut(s)	83, 799
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	4 cut(s)	95, 216, 477, 516
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	1 cut(s)	733
Bso31I	GGTCTC	1 cut(s)	908
Bsp1286I	GDGCHC	2 cut(s)	83, 799
Bsp143I	GATC	4 cut(s)	2, 125, 532, 1067
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	620
BspHI	TCATGA	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	4, 365
BspMI	ACCTGC	1 cut(s)	926
BspPI	GGATC	1 cut(s)	10
BspQI	GCTCTTC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	908
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	94, 145, 298
BssMI	GATC	4 cut(s)	2, 125, 532, 1067
BssNAI	GTATAC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	94, 298
Bst1107I	GTATAC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	5 cut(s)	149, 245, 343, 500, 689
Bst6I	CTCTTC	1 cut(s)	928
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	223, 628
BstDSI	CCRYGG	2 cut(s)	145, 298
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	4 cut(s)	5, 128, 535, 1070
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	4 cut(s)	2, 125, 532, 1067
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 294, 303, 324, 333, 592
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	805
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	305, 320, 404
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	2
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	2
BstZ17I	GTATAC	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	747
BtgI	CCRYGG	2 cut(s)	145, 298
BtsCI	GGATG	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	83, 694, 1005
BveI	ACCTGC	1 cut(s)	926
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	2 cut(s)	310, 336
Csp6I	GTAC	4 cut(s)	31, 258, 685, 724
CviAII	CATG	4 cut(s)	266, 291, 299, 440
CviQI	GTAC	4 cut(s)	31, 258, 685, 724
DdeI	CTNAG	2 cut(s)	223, 628
DpnI	GATC	4 cut(s)	4, 127, 534, 1069
DpnII	GATC	4 cut(s)	2, 125, 532, 1067
Eam1104I	CTCTTC	1 cut(s)	928
EarI	CTCTTC	1 cut(s)	928
Eco130I	CCWWGG	2 cut(s)	94, 298
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	94, 298
ErhI	CCWWGG	2 cut(s)	94, 298
FaeI	CATG	4 cut(s)	269, 294, 302, 443
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	4 cut(s)	265, 290, 298, 439
FbaI	TGATCA	2 cut(s)	125, 1067
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	319, 334, 393
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	319, 334, 393
FspBI	CTAG	2 cut(s)	25, 637
GluI	GCNGC	3 cut(s)	319, 334, 393
GsuI	CTGGAG	1 cut(s)	274
HgaI	GACGC	2 cut(s)	310, 336
Hin1II	CATG	4 cut(s)	269, 294, 302, 443
HindIII	AAGCTT	2 cut(s)	103, 926
HinfI	GANTC	3 cut(s)	642, 780, 1002
HphI	GGTGA	3 cut(s)	492, 588, 1043
Hpy166II	GTNNAC	5 cut(s)	42, 59, 81, 271, 483
Hpy188I	TCNGA	2 cut(s)	477, 1067
Hpy188III	TCNNGA	4 cut(s)	291, 426, 627, 668
Hpy8I	GTNNAC	5 cut(s)	42, 59, 81, 271, 483
HpyAV	CCTTC	6 cut(s)	482, 482, 607, 737, 1022, 1034
HpyCH4III	ACNGT	5 cut(s)	149, 245, 343, 500, 689
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	8 cut(s)	81, 137, 336, 372, 392, 586, 864, 966
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 294, 303, 324, 333, 592
HpyF3I	CTNAG	2 cut(s)	223, 628
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	4 cut(s)	269, 294, 302, 443
Ksp22I	TGATCA	2 cut(s)	125, 1067
Kzo9I	GATC	4 cut(s)	2, 125, 532, 1067
LguI	GCTCTTC	1 cut(s)	928
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	3 cut(s)	305, 320, 404
LweI	GCATC	4 cut(s)	82, 293, 425, 668
MaeI	CTAG	2 cut(s)	25, 637
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	2 cut(s)	536, 632
MalI	GATC	4 cut(s)	4, 127, 534, 1069
MboI	GATC	4 cut(s)	2, 125, 532, 1067
MboII	GAAGA	6 cut(s)	414, 555, 656, 918, 945, 1061
MflI	RGATCY	1 cut(s)	2
MhlI	GDGCHC	2 cut(s)	83, 799
MluCI	AATT	3 cut(s)	775, 784, 853
MmeI	TCCRAC	1 cut(s)	482
MroXI	GAANNNNTTC	2 cut(s)	596, 784
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	6 cut(s)	194, 294, 303, 324, 333, 592
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	4 cut(s)	2, 125, 532, 1067
NlaIII	CATG	4 cut(s)	269, 294, 302, 443
NlaIV	GGNNCC	2 cut(s)	4, 365
PagI	TCATGA	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	928
PdmI	GAANNNNTTC	2 cut(s)	596, 784
PfeI	GAWTC	3 cut(s)	642, 780, 1002
PflMI	CCANNNNNTGG	3 cut(s)	95, 216, 516
PkrI	GCNGC	3 cut(s)	320, 335, 394
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	2 cut(s)	4, 365
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	2
RsaI	GTAC	4 cut(s)	32, 259, 686, 725
RsaNI	GTAC	4 cut(s)	31, 258, 685, 724
SapI	GCTCTTC	1 cut(s)	928
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	319, 334, 393
Sau3AI	GATC	4 cut(s)	2, 125, 532, 1067
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	83, 799
SfaNI	GCATC	4 cut(s)	82, 293, 425, 668
SfcI	CTRYAG	1 cut(s)	805
SinI	GGWCC	1 cut(s)	86
SpeI	ACTAGT	1 cut(s)	24
Sse9I	AATT	3 cut(s)	775, 784, 853
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	2 cut(s)	25, 637
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	2 cut(s)	94, 298
TaaI	ACNGT	5 cut(s)	149, 245, 343, 500, 689
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	775, 784, 853
TfiI	GAWTC	3 cut(s)	642, 780, 1002
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	83, 694, 1012
TseI	GCWGC	3 cut(s)	318, 333, 392
TspDTI	ATGAA	4 cut(s)	106, 307, 589, 756
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	83, 694, 1012
Van91I	CCANNNNNTGG	3 cut(s)	95, 216, 516
VneI	GTGCAC	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	2 cut(s)	596, 784
XspI	CTAG	2 cut(s)	25, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.