Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Forward (+)

53415904 .. 53418596

Gene Structure 2693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCGAAGTTTAGTGTGAGGGGTATTTGGCAAAGATGGCGTGAAGCATATCCGAAAAATGGAACTAAGGCAGATGAGGGCATAACTGTCTTTACTGGAGTACCGACCATGTATACTCGATTGATACAAGCTCATGAAGCCATGGATGCGGAGCTAAAAGCTGCGTCTGCCTATGCTGCACAACAGTTGCGTCTTATGATGTGTGGTTCCTCTGCACTCCCTGTTCCTGTAATGCAGCAATGGGAAACTATCACAGGGCATCGTCTTCTGGAACGATACGGCATGACAGAGTTTGTGATGGCAATATCAAATCCCGTCAGAGGTGAAAGGAAGGCAGGCACGGTTGGAAAACCATTTCCTGGTGTGGAGGTAAAGATCGTTACAGAAGATGATAGTAAAAGTGATATGATGGTGGTGGGTGAGCTTTGCATTAGAAGCCCTTCATTGTTCAAGGAATATTGGAAACTTCCTGAGGTAACTAGAGAATCATTTACAAATGATGGGTTCTTCAAGACAGGAGATGCTGGTACAGTGGATAAAGATGGCTACTACATCATATTGGGACGTACGAGTGCTGATATAATGAAGGTTGGTGGATACAAGTTATCAGCATTAGAAATTGAATCAATTCTTTTAGAGCACCCATCTGTAGAGGAGTGTTGTGTATTGGGCTTACCGGACAAAGATTATGGAGAAATTGTCTGTGCAATAGTAGTGCCAGATGTGGAAGCAAAGAGGAAACAAGAGGAAGAAAAGAAACCTGCCATAAGCTTGGAAGAGCTATGCTCTGGGGCTAAACACAAACTTGCACCATACAAGCTACCAACACGACTTTTTGTGTGGGATTCACTGCCTCGTAATGCTATGGGGAAGGTGAATAAGAAGGAGTTGAAGAAAGTTCTGGCTTCTGATCAACAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

307

Amino Acids

34.29

Weight (kDa)

6.91

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	25 - 154	1.1e-28	AMP-binding enzyme
AMP-binding_C	PF13193	206 - 291	3e-17	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	102, 529, 568
AfiI	CCNNNNNNNGG	3 cut(s)	59, 320, 359
AgsI	TTSAA	4 cut(s)	451, 511, 623, 892
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	7 cut(s)	131, 154, 161, 424, 771, 781, 820
AluI	AGCT	7 cut(s)	131, 154, 161, 424, 771, 781, 820
Alw21I	GWGCWC	1 cut(s)	642
ApeKI	GCWGC	3 cut(s)	161, 176, 235
Asp700I	GAANNNNTTC	2 cut(s)	439, 627
AsuHPI	GGTGA	3 cut(s)	335, 431, 886
AxyI	CCTNAGG	1 cut(s)	471
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	148, 163, 247
BccI	CCATC	6 cut(s)	30, 292, 403, 494, 536, 652
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	910
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	162, 177, 236
BlsI	GCNGC	3 cut(s)	163, 178, 237
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	136, 268, 511
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpmI	CTGGAG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 320, 359
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	3 cut(s)	59, 320, 359
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	3 cut(s)	148, 163, 247
BsgI	GTGCAG	2 cut(s)	162, 198
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	677
BsiWI	CGTACG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	3 cut(s)	59, 320, 359
BsmFI	GGGAC	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	375, 910
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	769
BspQI	GCTCTTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	375, 910
BssNAI	GTATAC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	88, 186, 343, 532
Bst6I	CTCTTC	1 cut(s)	771
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	66, 471
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	378, 913
BstMBI	GATC	2 cut(s)	375, 910
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 137, 146, 167, 176, 435
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	148, 163, 247
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstZ17I	GTATAC	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	2 cut(s)	537, 848
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	133
CseI	GACGC	2 cut(s)	153, 179
Csp6I	GTAC	3 cut(s)	101, 528, 567
CviAII	CATG	4 cut(s)	109, 134, 142, 283
CviQI	GTAC	3 cut(s)	101, 528, 567
DdeI	CTNAG	2 cut(s)	66, 471
DpnI	GATC	2 cut(s)	377, 912
DpnII	GATC	2 cut(s)	375, 910
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	4 cut(s)	112, 137, 145, 286
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	4 cut(s)	108, 133, 141, 282
FbaI	TGATCA	1 cut(s)	910
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	162, 177, 236
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	162, 177, 236
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	3 cut(s)	162, 177, 236
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	2 cut(s)	153, 179
Hin1II	CATG	4 cut(s)	112, 137, 145, 286
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	3 cut(s)	485, 623, 845
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	3 cut(s)	335, 431, 886
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	54, 320, 910
Hpy188III	TCNNGA	4 cut(s)	134, 269, 470, 511
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	5 cut(s)	325, 450, 580, 865, 877
HpyCH4III	ACNGT	4 cut(s)	88, 186, 343, 532
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	6 cut(s)	179, 215, 235, 429, 707, 809
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 137, 146, 167, 176, 435
HpyF3I	CTNAG	2 cut(s)	66, 471
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	4 cut(s)	112, 137, 145, 286
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	2 cut(s)	375, 910
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	3 cut(s)	148, 163, 247
LweI	GCATC	3 cut(s)	136, 268, 511
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	379, 475
MalI	GATC	2 cut(s)	377, 912
MboI	GATC	2 cut(s)	375, 910
MboII	GAAGA	6 cut(s)	257, 398, 499, 761, 788, 904
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	3 cut(s)	618, 627, 696
MmeI	TCCRAC	1 cut(s)	325
MroXI	GAANNNNTTC	2 cut(s)	439, 627
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	6 cut(s)	37, 137, 146, 167, 176, 435
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	375, 910
NlaIII	CATG	4 cut(s)	112, 137, 145, 286
NlaIV	GGNNCC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	771
PdmI	GAANNNNTTC	2 cut(s)	439, 627
PfeI	GAWTC	3 cut(s)	485, 623, 845
Pfl23II	CGTACG	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	163, 178, 237
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspLI	CGTACG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	208
RsaI	GTAC	3 cut(s)	102, 529, 568
RsaNI	GTAC	3 cut(s)	101, 528, 567
SapI	GCTCTTC	1 cut(s)	771
SatI	GCNGC	3 cut(s)	162, 177, 236
Sau3AI	GATC	2 cut(s)	375, 910
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	3 cut(s)	136, 268, 511
SfcI	CTRYAG	1 cut(s)	648
Sse9I	AATT	3 cut(s)	618, 627, 696
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	88, 186, 343, 532
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	618, 627, 696
TfiI	GAWTC	3 cut(s)	485, 623, 845
TscAI	CASTG	2 cut(s)	537, 855
TseI	GCWGC	3 cut(s)	161, 176, 235
TspDTI	ATGAA	3 cut(s)	150, 432, 599
TspRI	CASTG	2 cut(s)	537, 855
Van91I	CCANNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	439, 627
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.