Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Reverse (-)

11045966 .. 11046720

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCGCCATACCTTATCTTCATCCTACCCTTTTGTCCTTTGTTGGCCTTTAATCATTATCTATATTTACAGGACGTCTCAATGATACTGAGTACTGAAGATCATATGCAACTCATGGAAAATGTTGCTGCTAAATGTGCTGCCCAAACCTCTCTTATTCCACCAGTTCCCAGTAGTTCTTCACCAGAAAGTGCAGCTGGTAGTTTAGGAATAGATGCAGATGCAATTTTTCACCGGAATATAAAACAAACAAGTAAGAGATATTTCATATTTAAAAATTATGTGAATTTATTTTCTGTATTGGGATGCTGTCATTTTTATTGTCATGCTGTCATTTTTTGTTGTACAGGTGAGGATCCTGCATTAGTCATATACACTAGTGGCACAACGGGAAAACCAAAAGGAGTTGTTCACACACACAAAAGCATCAGTGCACAAAATAGTTGTCTGGTTAGGTGCAGGATATTGATTGGTGTCACTTATGGTTCTCAATTTTGCCCTGATGTTGACTCAATTTCAGGTCCAAACCTTAGCAGAAGCTTGGGGGTATACATCTGCCGATCAGTTTTTGAATTGTTTACCTCTACATCATATCCTTCAGCTTTTTTGTGTATTTGCTTGCAAAATCGTATAGTTTTCAAATGCAGTCTCAGTTTACTTTTAGCTGATGTCTTCAAGTTTCTGTTAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

232

Amino Acids

25.51

Weight (kDa)

7.91

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	114 - 148	3.7e-13	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	350, 363
AcsI	RAATTY	2 cut(s)	286, 690
AcuI	CTGAAG	2 cut(s)	117, 582
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	94, 346
AgsI	TTSAA	3 cut(s)	572, 640, 676
AhlI	ACTAGT	1 cut(s)	377
AluBI	AGCT	4 cut(s)	197, 540, 602, 665
AluI	AGCT	4 cut(s)	197, 540, 602, 665
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	82, 653
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	350, 363
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	128, 140, 194
ApoI	RAATTY	2 cut(s)	286, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	174, 224, 362
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	115, 127, 206
BcoDI	GTCTC	2 cut(s)	82, 653
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	4 cut(s)	5, 129, 141, 195
BlsI	GCNGC	4 cut(s)	6, 130, 142, 196
BmcAI	AGTACT	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	4 cut(s)	205, 211, 296, 435
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	164, 171
BseGI	GGATG	2 cut(s)	21, 311
BseMII	CTCAG	2 cut(s)	80, 664
BseNI	ACTGG	2 cut(s)	164, 171
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	115, 127, 206
BsgI	GTGCAG	2 cut(s)	213, 478
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	82, 653
BsmBI	CGTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	100, 355, 560
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	81, 663
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	350, 363
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	164, 171
BssMI	GATC	3 cut(s)	100, 355, 560
BssNAI	GTATAC	1 cut(s)	550
BssNI	GRCGYC	1 cut(s)	75
Bst1107I	GTATAC	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	3 cut(s)	89, 530, 650
BstF5I	GGATG	2 cut(s)	21, 311
BstKTI	GATC	3 cut(s)	103, 358, 563
BstMAI	GTCTC	2 cut(s)	82, 653
BstMBI	GATC	3 cut(s)	100, 355, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	115, 127, 206
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BstZ17I	GTATAC	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	21, 311
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	93, 345
CviAII	CATG	2 cut(s)	115, 326
CviJI	RGCY	5 cut(s)	47, 197, 540, 602, 665
CviKI_1	RGCY	5 cut(s)	47, 197, 540, 602, 665
CviQI	GTAC	2 cut(s)	93, 345
DdeI	CTNAG	3 cut(s)	89, 530, 650
DpnI	GATC	3 cut(s)	102, 357, 562
DpnII	GATC	3 cut(s)	100, 355, 560
DraI	TTTAAA	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	117, 582
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	118, 329
FatI	CATG	2 cut(s)	114, 325
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	5, 129, 141, 195
FokI	GGATG	2 cut(s)	8, 318
Fsp4HI	GCNGC	4 cut(s)	5, 129, 141, 195
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	4 cut(s)	5, 129, 141, 195
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	118, 329
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	3 cut(s)	174, 224, 362
Hpy166II	GTNNAC	6 cut(s)	412, 434, 508, 550, 579, 656
Hpy8I	GTNNAC	6 cut(s)	412, 434, 508, 550, 579, 656
HpyAV	CCTTC	1 cut(s)	606
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	9 cut(s)	109, 194, 218, 224, 362, 434, 459, 622, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	89, 530, 650
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	118, 329
Kzo9I	GATC	3 cut(s)	100, 355, 560
Lsp1109I	GCAGC	3 cut(s)	115, 127, 206
LweI	GCATC	4 cut(s)	205, 211, 296, 435
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	3 cut(s)	102, 357, 562
MboI	GATC	3 cut(s)	100, 355, 560
MboII	GAAGA	4 cut(s)	10, 110, 171, 664
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	7 cut(s)	225, 277, 286, 491, 513, 572, 690
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	3 cut(s)	160, 346, 592
MseI	TTAA	2 cut(s)	51, 273
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	3 cut(s)	100, 355, 560
NlaIII	CATG	2 cut(s)	118, 329
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	6, 130, 142, 196
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	94, 346
RsaNI	GTAC	2 cut(s)	93, 345
SaqAI	TTAA	2 cut(s)	51, 273
SatI	GCNGC	4 cut(s)	5, 129, 141, 195
Sau3AI	GATC	3 cut(s)	100, 355, 560
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	4 cut(s)	205, 211, 296, 435
SinI	GGWCC	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	7 cut(s)	225, 277, 286, 491, 513, 572, 690
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	78
TasI	AATT	7 cut(s)	225, 277, 286, 491, 513, 572, 690
TatI	WGTACW	2 cut(s)	92, 344
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	51, 273
Tru9I	TTAA	2 cut(s)	51, 273
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	3 cut(s)	128, 140, 194
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	10, 256
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	286, 690
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.