Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014771

Physical Location & Seq

Genomic Coordinates Reverse (-)

25264029 .. 25265171

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCAGAGTCTGTTGCTCCATTGAGATGGAGCCTAAGACCTTGAGTCAAGTACAACTCAACCATGCTAGGGAAAAGGCGGCAGATGTTGTTCAGAAAACGGAATCAAGTGAGGCCTCAGCTACATTCAGTGAGGGTTTGAGACCGATTTATTCGAAGAGACAGACGGAGAGAGAAAATACTAGTAAAGAGGGTGAAGAAGTACAGAATAAGCTGATTCTGGAGTTGGAGGAGTCTCAAGTACTGTCTGAAAGATCATGCCAATGCTTGTGTGGTGCTGCCAATATTGAAACCCCGGATCAAGAAAACCTCAAGGAACCCCTCTCGGCCCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

4.78

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32180
malus_domestica	MD09G1205700.v1.1 MD17G1186400.v1.1
prunus_persica	Prupe.3G061100_v2.0.a1 Prupe.3G061100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0140071
rosa_laevigata	RLG00000019846
rosa_multiflora	Rmu_sc0003365.1_g000002 Rmu_sc0013099.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105080
rosa_rugosa	Rorug02G0360900 Rorug02G0360900
rosa_samantha	Rh2AG411600 Rh2BG421900 Rh2CG397700 Rh2DG431300
rosa_wichuraiana	Rw2G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	54, 204, 243
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	290
AhdI	GACNNNNNGTC	1 cut(s)	45
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	2 cut(s)	122, 214
AluI	AGCT	2 cut(s)	122, 214
Alw26I	GTCTC	3 cut(s)	136, 154, 240
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	12
AoxI	GGCC	3 cut(s)	3, 114, 327
ApeKI	GCWGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	136, 154, 240
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	69, 183
BisI	GCNGC	2 cut(s)	81, 279
BlsI	GCNGC	2 cut(s)	82, 280
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	296
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	33, 318, 330
BmrFI	CCNGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	3 cut(s)	64, 222, 296
BpuMI	CCSGG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	3 cut(s)	5, 116, 329
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	3 cut(s)	136, 154, 240
BsnI	GGCC	3 cut(s)	5, 116, 329
Bso31I	GGTCTC	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	254, 298
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	5, 116, 329
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	33, 318, 330
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	254, 298
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	36, 118
BstKTI	GATC	2 cut(s)	257, 301
BstMAI	GTCTC	3 cut(s)	136, 154, 240
BstMBI	GATC	2 cut(s)	254, 298
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	5, 116, 329
BtsIMutI	CAGTG	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	53, 203, 242
CviAII	CATG	2 cut(s)	65, 258
CviJI	RGCY	6 cut(s)	5, 34, 116, 122, 214, 329
CviKI_1	RGCY	6 cut(s)	5, 34, 116, 122, 214, 329
CviQI	GTAC	3 cut(s)	53, 203, 242
DdeI	CTNAG	2 cut(s)	36, 118
DpnI	GATC	2 cut(s)	256, 300
DpnII	GATC	2 cut(s)	254, 298
DriI	GACNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	68, 261
FaiI	YATR	2 cut(s)	66, 259
FatI	CATG	2 cut(s)	64, 257
Fnu4HI	GCNGC	2 cut(s)	81, 279
Fsp4HI	GCNGC	2 cut(s)	81, 279
FspBI	CTAG	2 cut(s)	69, 183
GluI	GCNGC	2 cut(s)	81, 279
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	5, 116, 329
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	2 cut(s)	68, 261
HinfI	GANTC	5 cut(s)	9, 46, 104, 217, 233
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	96, 250
Hpy188III	TCNNGA	2 cut(s)	221, 302
HpyCH4III	ACNGT	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	36, 118
Hsp92II	CATG	2 cut(s)	68, 261
Kzo9I	GATC	2 cut(s)	254, 298
LmnI	GCTCC	2 cut(s)	23, 31
LpnPI	CCDG	3 cut(s)	19, 206, 309
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	69, 183
MalI	GATC	2 cut(s)	256, 300
MboI	GATC	2 cut(s)	254, 298
MboII	GAAGA	2 cut(s)	169, 209
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	18, 55, 242
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	106, 127, 127, 184, 223, 320, 332
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	26, 262
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	296
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	254, 298
NlaIII	CATG	2 cut(s)	68, 261
NlaIV	GGNNCC	3 cut(s)	33, 318, 330
NmeAIII	GCCGAG	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	104, 217
PkrI	GCNGC	2 cut(s)	82, 280
PleI	GAGTC	3 cut(s)	17, 54, 241
PpsI	GAGTC	3 cut(s)	17, 54, 241
PspN4I	GGNNCC	3 cut(s)	33, 318, 330
PspPI	GGNCC	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	54, 204, 243
RsaNI	GTAC	3 cut(s)	53, 203, 242
RseI	CAYNNNNRTG	2 cut(s)	26, 262
SatI	GCNGC	2 cut(s)	81, 279
Sau3AI	GATC	2 cut(s)	254, 298
Sau96I	GGNCC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	3 cut(s)	18, 55, 242
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	4 cut(s)	44, 124, 216, 312
SfuI	TTCGAA	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	26, 262
SmlI	CTYRAG	3 cut(s)	43, 237, 311
SmoI	CTYRAG	3 cut(s)	43, 237, 311
SpeI	ACTAGT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	69, 183
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	155
TaqII	GACCGA	1 cut(s)	160
TatI	WGTACW	3 cut(s)	52, 202, 241
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	104, 217
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	116, 182
TspRI	CASTG	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	2 cut(s)	69, 183
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.