Prupe.3G061100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014771
Physical Location & Seq
Forward (+)
4387305 .. 4388287
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G061100.1

Sequence Viewer

Length: 333 bp
ATGGCTAAAGGTTGTTGTTCTATTGAGTTGGAGCCTAGGACTTTGAGTGAAGGACAACTCAACCATGCTAGGGAACTGGCTGCTGATGTGGTTGAGAAAATGGAACCAGAAGAAGCCTCGGCTATATTCATTCAGGGACTGAGACCGGTTGGCTCAATGAAAGAGATGGTGCATATGGTTGCTGAAGAGGGTAAGCAACTGCAGAGTAAGGTTGTGGAGTGGAAGGAGGCTCAAATTCTTGAAACGCCCCCTTGCCAGTGCTTGTGCTCTACTGTCAAAATTGAATCCCCCGATCAAGGAACGCTTACCGAACCGTTGTCAGCCCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

4.71

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 70, 296
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 242, 284
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 234
AsiGI ACCGGT 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 35
AvrII CCTAGG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 2 cut(s) 36, 69
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 81
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 33, 105
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 35, 117
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 296
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 81, 256
BseDI CCNNGG 2 cut(s) 35, 117
BseLI CCNNNNNNNGG 2 cut(s) 70, 296
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 81, 256
BseXI GCAGC 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 70, 296
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 33, 105
BspMAI CTGCAG 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 2 cut(s) 81, 256
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 35, 117
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 274, 315
Bst6I CTCTTC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 140
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 145
CviAII CATG 1 cut(s) 65
CviJI RGCY 8 cut(s) 5, 34, 80, 116, 122, 153, 230, 323
CviKI_1 RGCY 8 cut(s) 5, 34, 80, 116, 122, 153, 230, 323
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 66, 125, 174, 176
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 36, 69
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 68
HinfI GANTC 1 cut(s) 284
HpaII CCGG 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 44, 217
HpyCH4III ACNGT 2 cut(s) 274, 315
HpyCH4V TGCA 2 cut(s) 172, 202
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 62, 119, 120, 159, 269
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 2 cut(s) 36, 69
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 122, 197
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 2 cut(s) 234, 279
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 3 cut(s) 127, 181, 220
MspI CCGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 174
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 33, 105
NmeAIII GCCGAG 1 cut(s) 98
PfeI GAWTC 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 33, 105
PstI CTGCAG 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 139
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 292
SduI GDGCHC 1 cut(s) 269
SetI ASST 2 cut(s) 13, 213
SfcI CTRYAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 234, 279
SspMI CTAG 2 cut(s) 36, 69
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 274, 315
TasI AATT 2 cut(s) 234, 279
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 1 cut(s) 263
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 118, 173
TspRI CASTG 1 cut(s) 263
XapI RAATTY 1 cut(s) 234
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.