Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014771

Physical Location & Seq

Genomic Coordinates Reverse (-)

57397774 .. 57398511

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGCCTAGGACCTTGAGTCAAGTACAGCTCAACCATGCTAGGGAAATGGCTGCAGATGTGGTTCAGAAAATGGAACCAAATGAAGCCTCAGCTACATTCAGTGAGGGATTGAGACCAATTAGTTCAAAGAGACAGATGGAGCAAGAAGATGCTGATGGAGACGGTGAAGAACCTAAGAATAAATTAATTCTGGAGTTGGAGGGGGCTCAAGTGTATGAAAGACCATGCCAATGCTTGTGTGCTGCCAATATTGAAACCCCGGATCAAGAAAAGCTTAAGGAACCCCTCTCGGCCCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

4.54

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32180
malus_domestica	MD09G1205700.v1.1 MD17G1186400.v1.1
prunus_persica	Prupe.3G061100_v2.0.a1 Prupe.3G061100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0140071
rosa_laevigata	RLG00000019846
rosa_multiflora	Rmu_sc0003365.1_g000002 Rmu_sc0013099.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105080
rosa_rugosa	Rorug02G0360900 Rorug02G0360900
rosa_samantha	Rh2AG411600 Rh2BG421900 Rh2CG397700 Rh2DG431300
rosa_wichuraiana	Rw2G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	129, 257
AhdI	GACNNNNNGTC	1 cut(s)	18
AluBI	AGCT	3 cut(s)	31, 95, 277
AluI	AGCT	3 cut(s)	31, 95, 277
Alw26I	GTCTC	3 cut(s)	109, 127, 156
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	53, 245
AseI	ATTAAT	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	12, 295
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	12
AvrII	CCTAGG	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	211
BbvCI	CCTCAGC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	40, 232
BccI	CCATC	2 cut(s)	133, 152
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	109, 127, 156
BfaI	CTAG	2 cut(s)	9, 42
BfmI	CTRYAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	54, 246
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	2 cut(s)	55, 247
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	12
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	12, 295
BmiI	GGNNCC	4 cut(s)	6, 78, 285, 297
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	2 cut(s)	37, 195
BpuMI	CCSGG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	8, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	8, 261
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	40, 232
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	3 cut(s)	109, 127, 156
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	4 cut(s)	6, 78, 285, 297
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	8, 261
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	91, 177
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	3 cut(s)	109, 127, 156
BstMBI	GATC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 232
BsuRI	GGCC	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	12, 295
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	38, 228
CviJI	RGCY	8 cut(s)	7, 31, 53, 89, 95, 209, 277, 296
CviKI_1	RGCY	8 cut(s)	7, 31, 53, 89, 95, 209, 277, 296
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	91, 177
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DriI	GACNNNNNGTC	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	41, 231
FaiI	YATR	3 cut(s)	39, 219, 229
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	37, 227
Fnu4HI	GCNGC	2 cut(s)	54, 246
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	54, 246
FspBI	CTAG	2 cut(s)	9, 42
GluI	GCNGC	2 cut(s)	54, 246
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	41, 231
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	69, 305
Hpy188III	TCNNGA	2 cut(s)	194, 269
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	91, 177
Hsp92II	CATG	2 cut(s)	41, 231
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	4, 142
LpnPI	CCDG	2 cut(s)	179, 276
Lsp1109I	GCAGC	2 cut(s)	40, 232
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	9, 42
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	161, 182
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	3 cut(s)	120, 185, 189
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	100, 100, 196, 299
MseI	TTAA	2 cut(s)	188, 279
MslI	CAYNNNNRTG	1 cut(s)	232
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	263
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	41, 231
NlaIV	GGNNCC	4 cut(s)	6, 78, 285, 297
NmeAIII	GCCGAG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	55, 247
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PpuMI	RGGWCCY	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	12
PspN4I	GGNNCC	4 cut(s)	6, 78, 285, 297
PspPI	GGNCC	2 cut(s)	12, 295
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	188, 279
SatI	GCNGC	2 cut(s)	54, 246
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	12, 295
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	5 cut(s)	17, 33, 97, 178, 279
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	3 cut(s)	16, 210, 278
SmoI	CTYRAG	3 cut(s)	16, 210, 278
Sse9I	AATT	3 cut(s)	120, 185, 189
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	2 cut(s)	9, 42
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	3 cut(s)	120, 185, 189
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	188, 279
Tru9I	TTAA	2 cut(s)	188, 279
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	53, 245
TspDTI	ATGAA	2 cut(s)	99, 234
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	8
XspI	CTAG	2 cut(s)	9, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.